BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0192.0060.p (221 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001202409.1| 16S rRNA methyltransferase GidB [Bradyrhizob... 349 1e-94 ref|ZP_08627878.1| rRNA small subunit methyltransferase GidB [Br... 343 2e-92 ref|NP_767272.1| 16S rRNA methyltransferase GidB [Bradyrhizobium... 342 3e-92 ref|YP_001236369.1| 16S rRNA methyltransferase GidB [Bradyrhizob... 329 2e-88 ref|YP_530183.1| 16S rRNA methyltransferase GidB [Rhodopseudomon... 323 1e-86 >ref|YP_001202409.1| 16S rRNA methyltransferase GidB [Bradyrhizobium sp. ORS 278] sp|A4YJT3.1|RSMG_BRASO RecName: Full=Ribosomal RNA small subunit methyltransferase G; AltName: Full=16S rRNA 7-methylguanosine methyltransferase; Short=16S rRNA m7G methyltransferase emb|CAL74159.1| Glucose inhibited division protein B; Methyltransferase gidB [Bradyrhizobium sp. ORS 278] Length = 222 Score = 349 bits (896), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 176/221 (79%), Positives = 189/221 (85%) Query: 1 MASNSQPAELSVSAKDKAAALALTPVSRETEARLDRYIALLLAWQAKTNLVAPSTLPALW 60 M S A + A DKAAALALTPVSRETE RLDRYIALLL WQAKTNLVAPSTLP LW Sbjct: 1 MKPTSSAAARNELASDKAAALALTPVSRETERRLDRYIALLLEWQAKTNLVAPSTLPHLW 60 Query: 61 TRHVSDSLQLLSLAPTAKSWVDLGSGGGFPGVVLACALAETPGASIHLVERIAKKAAFLR 120 TRH+SDSLQLL LAP A WVDLGSGGGFPGVVLACALAE PGA +HLVERIAKKAAFLR Sbjct: 61 TRHISDSLQLLDLAPEASFWVDLGSGGGFPGVVLACALAERPGAKVHLVERIAKKAAFLR 120 Query: 121 EAIRVTASPGTVHLADIGDTVDRIPGPIDCVTARALAPLHQLIGFAEPWVKNGAKALFLK 180 EAIRVT SPGTVHL++IGD V++ G +DCVTARALAPLHQL+GFAEP VK GAKALFLK Sbjct: 121 EAIRVTGSPGTVHLSEIGDIVEKWSGRVDCVTARALAPLHQLVGFAEPLVKKGAKALFLK 180 Query: 181 GQDVEAELTEATKYWIIELKLHASLTGGQGWIVELGSIERR 221 GQDV+AELTE+TKYW IE KLH+S TGGQGWIV + IERR Sbjct: 181 GQDVDAELTESTKYWKIEPKLHSSRTGGQGWIVAIDCIERR 221 >ref|ZP_08627878.1| rRNA small subunit methyltransferase GidB [Bradyrhizobiaceae bacterium SG-6C] gb|EGP09407.1| rRNA small subunit methyltransferase GidB [Bradyrhizobiaceae bacterium SG-6C] Length = 218 Score = 343 bits (879), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 168/217 (77%), Positives = 188/217 (86%) Query: 5 SQPAELSVSAKDKAAALALTPVSRETEARLDRYIALLLAWQAKTNLVAPSTLPALWTRHV 64 ++PA +S+SA DKAAAL LTPVSRETEARLDRY+ LL+AWQAKTNL+APSTLP LWTRH+ Sbjct: 2 AKPAPVSISAFDKAAALKLTPVSRETEARLDRYVDLLVAWQAKTNLIAPSTLPQLWTRHI 61 Query: 65 SDSLQLLSLAPTAKSWVDLGSGGGFPGVVLACALAETPGASIHLVERIAKKAAFLREAIR 124 SDSLQLL LAP A+ W+D GSGGGFPGVVLACA+AE PGAS+ LVERIAKKAAFLREA+R Sbjct: 62 SDSLQLLDLAPNARRWLDFGSGGGFPGVVLACAMAEHPGASVQLVERIAKKAAFLREALR 121 Query: 125 VTASPGTVHLADIGDTVDRIPGPIDCVTARALAPLHQLIGFAEPWVKNGAKALFLKGQDV 184 VT +PG+V LADIGD VD + P+DCVTARA+APLH L+GFA P V+ GAKALFLKGQDV Sbjct: 122 VTGAPGSVVLADIGDYVDSLKTPVDCVTARAVAPLHMLLGFAAPLVQRGAKALFLKGQDV 181 Query: 185 EAELTEATKYWIIELKLHASLTGGQGWIVELGSIERR 221 EAELTEATKYW IE LH S TGG GWIVEL IERR Sbjct: 182 EAELTEATKYWSIEPLLHPSRTGGHGWIVELNKIERR 218 >ref|NP_767272.1| 16S rRNA methyltransferase GidB [Bradyrhizobium japonicum USDA 110] sp|Q89WP6.1|RSMG_BRAJA RecName: Full=Ribosomal RNA small subunit methyltransferase G; AltName: Full=16S rRNA 7-methylguanosine methyltransferase; Short=16S rRNA m7G methyltransferase dbj|BAC45897.1| gidB [Bradyrhizobium japonicum USDA 110] Length = 260 Score = 342 bits (876), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 169/211 (80%), Positives = 183/211 (86%), Gaps = 1/211 (0%) Query: 11 SVSAKDKAAALALTPVSRETEARLDRYIALLLAWQAKTNLVAPSTLPALWTRHVSDSLQL 70 SV A DK AAL L PVSRETEARLDRYIALL WQAKTNLVAPSTLP LWTRH++DSLQL Sbjct: 50 SVIAADKIAALKLAPVSRETEARLDRYIALLREWQAKTNLVAPSTLPHLWTRHIADSLQL 109 Query: 71 LSLAPTAKSWVDLGSGGGFPGVVLACALAETPGASIHLVERIAKKAAFLREAIRVTASPG 130 + LAPTA+ W DLGSGGGFPGVVLAC +AETPGAS+HLVERIAKKAAFLREAIR+T SPG Sbjct: 110 VDLAPTARRWADLGSGGGFPGVVLACTMAETPGASVHLVERIAKKAAFLREAIRITTSPG 169 Query: 131 TVHLADIGDTVDRIPGPIDCVTARALAPLHQLIGFAEPWVKNGAKALFLKGQDVEAELTE 190 VHLA+IGD VDRI GP+DCVTARALAPLHQLIGFAEP ++ GAKALF KGQDVEAELTE Sbjct: 170 VVHLAEIGDNVDRITGPVDCVTARALAPLHQLIGFAEPLMRQGAKALFPKGQDVEAELTE 229 Query: 191 ATKYWIIELKLHASLTGGQGWIVELGSIERR 221 A KYW I+ +LH S T G GWIVEL + ERR Sbjct: 230 AAKYWNIQPQLHQSRT-GDGWIVELNAAERR 259 >ref|YP_001236369.1| 16S rRNA methyltransferase GidB [Bradyrhizobium sp. BTAi1] sp|A5E8G9.1|RSMG_BRASB RecName: Full=Ribosomal RNA small subunit methyltransferase G; AltName: Full=16S rRNA 7-methylguanosine methyltransferase; Short=16S rRNA m7G methyltransferase gb|ABQ32463.1| Glucose inhibited division protein B [Bradyrhizobium sp. BTAi1] Length = 222 Score = 329 bits (844), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 162/197 (82%), Positives = 175/197 (88%) Query: 24 TPVSRETEARLDRYIALLLAWQAKTNLVAPSTLPALWTRHVSDSLQLLSLAPTAKSWVDL 83 TPVSRETE RLDRY+ALLL WQAKTNLVAPSTLP LWTRH+SDSLQLL LAP AK WVDL Sbjct: 24 TPVSRETEQRLDRYVALLLEWQAKTNLVAPSTLPHLWTRHISDSLQLLDLAPDAKIWVDL 83 Query: 84 GSGGGFPGVVLACALAETPGASIHLVERIAKKAAFLREAIRVTASPGTVHLADIGDTVDR 143 GSGGGFPGVVLACALAE PGA +HLVERIAKKAAFLREAIRVT +PG VHL++IGD V++ Sbjct: 84 GSGGGFPGVVLACALAERPGAEVHLVERIAKKAAFLREAIRVTGAPGIVHLSEIGDIVEK 143 Query: 144 IPGPIDCVTARALAPLHQLIGFAEPWVKNGAKALFLKGQDVEAELTEATKYWIIELKLHA 203 G +DCVTARALAPLHQLIGFAEP VK GAKALFLKGQDVEAELTE+TKYW IE KL++ Sbjct: 144 WSGGVDCVTARALAPLHQLIGFAEPLVKRGAKALFLKGQDVEAELTESTKYWKIEPKLYS 203 Query: 204 SLTGGQGWIVELGSIER 220 S TGGQGWIV + IER Sbjct: 204 SRTGGQGWIVAIDCIER 220 >ref|YP_530183.1| 16S rRNA methyltransferase GidB [Rhodopseudomonas palustris BisB18] sp|Q21CM2.1|RSMG_RHOPB RecName: Full=Ribosomal RNA small subunit methyltransferase G; AltName: Full=16S rRNA 7-methylguanosine methyltransferase; Short=16S rRNA m7G methyltransferase gb|ABD85864.1| methyltransferase GidB [Rhodopseudomonas palustris BisB18] Length = 234 Score = 323 bits (827), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 164/223 (73%), Positives = 184/223 (82%), Gaps = 7/223 (3%) Query: 1 MASNSQ----PAELSVSAKDKAAALALTPVSRETEARLDRYIALLLAWQAKTNLVAPSTL 56 MA SQ P EL A DKAAAL LTPVSRETEARLD Y+ALLL WQAKTNL++P+TL Sbjct: 1 MAQRSQKSPPPPEL---AADKAAALRLTPVSRETEARLDAYVALLLQWQAKTNLISPATL 57 Query: 57 PALWTRHVSDSLQLLSLAPTAKSWVDLGSGGGFPGVVLACALAETPGASIHLVERIAKKA 116 P LWTRHV+DSLQLL LAP AK+W+D GSGGGFPGVVLACALAE+ G S+ LVER KKA Sbjct: 58 PQLWTRHVADSLQLLRLAPDAKTWLDFGSGGGFPGVVLACALAESAGGSVQLVERNVKKA 117 Query: 117 AFLREAIRVTASPGTVHLADIGDTVDRIPGPIDCVTARALAPLHQLIGFAEPWVKNGAKA 176 AFLREA+RVT G V LADIGD+VDR G +DCVTARA+APLHQLIGFA+P ++ GAKA Sbjct: 118 AFLREALRVTGGAGQVILADIGDSVDRFAGQVDCVTARAVAPLHQLIGFAKPLIRQGAKA 177 Query: 177 LFLKGQDVEAELTEATKYWIIELKLHASLTGGQGWIVELGSIE 219 LFLKGQDV+AELTEATK W +LH SLTGGQGWIVELG++E Sbjct: 178 LFLKGQDVDAELTEATKSWKFSPRLHPSLTGGQGWIVELGAVE 220