BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0192.0057.p (231 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767269.1| DNA polymerase III subunit delta [Bradyrhizobiu... 395 e-108 ref|YP_001236372.1| DNA polymerase III subunit delta [Bradyrhizo... 366 2e-99 ref|YP_001202406.1| DNA polymerase III subunit delta [Bradyrhizo... 366 2e-99 ref|YP_316713.1| DNA polymerase III subunit delta [Nitrobacter w... 338 3e-91 ref|YP_575461.1| DNA polymerase III subunit delta [Nitrobacter h... 332 3e-89 >ref|NP_767269.1| DNA polymerase III subunit delta [Bradyrhizobium japonicum USDA 110] dbj|BAC45894.1| blr0629 [Bradyrhizobium japonicum USDA 110] Length = 342 Score = 395 bits (1014), Expect = e-108, Method: Compositional matrix adjust. Identities = 193/231 (83%), Positives = 210/231 (90%) Query: 1 VIEAGELRPESPLRKICERAKNAVAIGCYPDTERDLTKLIEDELRVSNLRLAQDARAVLM 60 VIEAGELRPESPLRK CERAK AVAIGCYPDTERDL KL++DELR++NLR+AQDARA LM Sbjct: 112 VIEAGELRPESPLRKACERAKTAVAIGCYPDTERDLAKLMDDELRIANLRIAQDARAALM 171 Query: 61 SLLGGDRMASRNELRKLALFAHGKGEITLEDVMTVVSDASELKLDPIVDGAFAGNAALVE 120 S LGGDR ASRNELRKL L+AHGKGEITLEDVM VV+DASELKLDPIVDGAFAG +VE Sbjct: 172 SFLGGDRQASRNELRKLTLYAHGKGEITLEDVMAVVADASELKLDPIVDGAFAGRPDIVE 231 Query: 121 SEFTKAMVAGTYPGVIISAAQRQAAWLHKSALAIADGTPASAVLDGGFPRLHFSRKPAVE 180 +EF KAM+AGTYPGVIISAAQRQAAWLHKSALAIADG PASAVLDGGFPRLHFSRKPAVE Sbjct: 232 TEFAKAMIAGTYPGVIISAAQRQAAWLHKSALAIADGQPASAVLDGGFPRLHFSRKPAVE 291 Query: 181 IALRNFTPPRLVNVIDQLATAALDMRKQASLAAVIAQRALLSIAANAKRRG 231 ALRNF+ RL +I+QLATAALD RKQ++LAA IAQR L++IAANAKRRG Sbjct: 292 TALRNFSVARLAAIIEQLATAALDTRKQSTLAAAIAQRTLMAIAANAKRRG 342 >ref|YP_001236372.1| DNA polymerase III subunit delta [Bradyrhizobium sp. BTAi1] gb|ABQ32466.1| DNA polymerase III, delta subunit [Bradyrhizobium sp. BTAi1] Length = 342 Score = 366 bits (939), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 175/231 (75%), Positives = 203/231 (87%) Query: 1 VIEAGELRPESPLRKICERAKNAVAIGCYPDTERDLTKLIEDELRVSNLRLAQDARAVLM 60 VIEAG++RP+SPLRKICE+A A AIGCYPDTERDL +LI++ELRV+ LR+A DARA LM Sbjct: 112 VIEAGDIRPDSPLRKICEKATTAAAIGCYPDTERDLARLIDEELRVAALRIAPDARASLM 171 Query: 61 SLLGGDRMASRNELRKLALFAHGKGEITLEDVMTVVSDASELKLDPIVDGAFAGNAALVE 120 +LLGGDR ASRNELRKL LFAHG+GE+TL+ VM VV+DASE+KLDPIVDGAF G +VE Sbjct: 172 ALLGGDRQASRNELRKLTLFAHGEGEVTLDHVMAVVADASEMKLDPIVDGAFGGKPDVVE 231 Query: 121 SEFTKAMVAGTYPGVIISAAQRQAAWLHKSALAIADGTPASAVLDGGFPRLHFSRKPAVE 180 +EF KAM+AGTYPGVIISAAQR AAWLHKSALA+A GTP S++L+GGFPRLHFSRKP+ E Sbjct: 232 TEFGKAMIAGTYPGVIISAAQRHAAWLHKSALAVASGTPVSSILEGGFPRLHFSRKPSAE 291 Query: 181 IALRNFTPPRLVNVIDQLATAALDMRKQASLAAVIAQRALLSIAANAKRRG 231 ALRNF+P RL+ +IDQLATAALDMRKQ LAA IAQR LLSIA NA+R+G Sbjct: 292 TALRNFSPARLLPIIDQLATAALDMRKQPGLAAAIAQRTLLSIAVNARRKG 342 >ref|YP_001202406.1| DNA polymerase III subunit delta [Bradyrhizobium sp. ORS 278] emb|CAL74156.1| conserved hypothetical protein; putative DNA polymerase III, delta subunit [Bradyrhizobium sp. ORS 278] Length = 342 Score = 366 bits (939), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 173/231 (74%), Positives = 203/231 (87%) Query: 1 VIEAGELRPESPLRKICERAKNAVAIGCYPDTERDLTKLIEDELRVSNLRLAQDARAVLM 60 VIEAG++RP+SPLRKICE+A AVAIGCYPDTERDL +LI+DELR +NLR+A DAR+ LM Sbjct: 112 VIEAGDIRPDSPLRKICEKAATAVAIGCYPDTERDLARLIDDELRTANLRMAPDARSYLM 171 Query: 61 SLLGGDRMASRNELRKLALFAHGKGEITLEDVMTVVSDASELKLDPIVDGAFAGNAALVE 120 +LLGGDR ASRNE+RKL LFAHG+GE+TL+ VM VV+DASE+KLDPIVDGAF G +VE Sbjct: 172 ALLGGDRQASRNEIRKLTLFAHGEGEVTLDHVMAVVADASEMKLDPIVDGAFGGKPDVVE 231 Query: 121 SEFTKAMVAGTYPGVIISAAQRQAAWLHKSALAIADGTPASAVLDGGFPRLHFSRKPAVE 180 +EF KAM+AGTYPGVIISAAQR AAWLHKSALA+A G P S++L+GGFPRLHFSRKP+ E Sbjct: 232 TEFGKAMIAGTYPGVIISAAQRHAAWLHKSALAVASGAPVSSILEGGFPRLHFSRKPSAE 291 Query: 181 IALRNFTPPRLVNVIDQLATAALDMRKQASLAAVIAQRALLSIAANAKRRG 231 +ALRNF+P RL+ +IDQLATAALDMRKQ LAA IAQR LLSIA A+R+G Sbjct: 292 VALRNFSPARLLPIIDQLATAALDMRKQPGLAAAIAQRTLLSIAVAARRKG 342 >ref|YP_316713.1| DNA polymerase III subunit delta [Nitrobacter winogradskyi Nb-255] gb|ABA03361.1| DNA polymerase III, delta subunit [Nitrobacter winogradskyi Nb-255] Length = 342 Score = 338 bits (867), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 167/231 (72%), Positives = 196/231 (84%) Query: 1 VIEAGELRPESPLRKICERAKNAVAIGCYPDTERDLTKLIEDELRVSNLRLAQDARAVLM 60 VIEAGELRPESPLRK CERAKNAVAI CYPDTERDL +LI++ELR S+L++A DARA LM Sbjct: 112 VIEAGELRPESPLRKACERAKNAVAIACYPDTERDLARLIDEELRASDLKIAPDARAALM 171 Query: 61 SLLGGDRMASRNELRKLALFAHGKGEITLEDVMTVVSDASELKLDPIVDGAFAGNAALVE 120 SLLGGDR ASRNELRK+AL+AHG+GEITL DVM VVSDAS+ KLDP++D AFAG A VE Sbjct: 172 SLLGGDRQASRNELRKIALYAHGQGEITLLDVMAVVSDASDFKLDPVIDAAFAGRPAAVE 231 Query: 121 SEFTKAMVAGTYPGVIISAAQRQAAWLHKSALAIADGTPASAVLDGGFPRLHFSRKPAVE 180 +EF KAMVAGTYPG++ISAAQR A LHK+AL + +G AS+ + GFPRLHFSRK +VE Sbjct: 232 AEFAKAMVAGTYPGLVISAAQRFVAALHKAALLMEEGASASSATERGFPRLHFSRKASVE 291 Query: 181 IALRNFTPPRLVNVIDQLATAALDMRKQASLAAVIAQRALLSIAANAKRRG 231 AL +F+ PRLV V+DQLA AAL+ RKQA+LA+ I QRAL+SIA NA+RRG Sbjct: 292 TALSHFSAPRLVQVMDQLARAALETRKQAALASAITQRALMSIAVNARRRG 342 >ref|YP_575461.1| DNA polymerase III subunit delta [Nitrobacter hamburgensis X14] gb|ABE61001.1| DNA polymerase III, delta subunit [Nitrobacter hamburgensis X14] Length = 342 Score = 332 bits (851), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 171/231 (74%), Positives = 196/231 (84%) Query: 1 VIEAGELRPESPLRKICERAKNAVAIGCYPDTERDLTKLIEDELRVSNLRLAQDARAVLM 60 VIEAGELRPE+PLRK CERAKNAVAI CYPDTERDL +LI+DELR+SNL++A DARA LM Sbjct: 112 VIEAGELRPEAPLRKACERAKNAVAIACYPDTERDLARLIDDELRLSNLKIAPDARATLM 171 Query: 61 SLLGGDRMASRNELRKLALFAHGKGEITLEDVMTVVSDASELKLDPIVDGAFAGNAALVE 120 SLLGGDR ASRNELRK+AL+AHG+ EI L+DVM VVSDAS+ KLDPIVD AFAG A+VE Sbjct: 172 SLLGGDRQASRNELRKIALYAHGQREIALDDVMAVVSDASDFKLDPIVDAAFAGQPAVVE 231 Query: 121 SEFTKAMVAGTYPGVIISAAQRQAAWLHKSALAIADGTPASAVLDGGFPRLHFSRKPAVE 180 +EF KAMVAGTYPG++I AAQRQ A LHK+ALA+ G AS+ + GFPRLHFSRK AVE Sbjct: 232 TEFAKAMVAGTYPGLVILAAQRQVAALHKAALAMEGGASASSAAESGFPRLHFSRKTAVE 291 Query: 181 IALRNFTPPRLVNVIDQLATAALDMRKQASLAAVIAQRALLSIAANAKRRG 231 ALRNF+ RL+ V+DQLA AAL+ RKQ LA VIAQRAL+SIA NA+RRG Sbjct: 292 TALRNFSAARLLQVMDQLAVAALEARKQTVLAPVIAQRALMSIAVNARRRG 342