BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0192.0056.p         (93 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_767269.1| DNA polymerase III subunit delta [Bradyrhizobiu...   156   1e-36
ref|ZP_08627881.1| DNA polymerase III delta subunit [Bradyrhizob...   154   6e-36
ref|YP_575461.1| DNA polymerase III subunit delta [Nitrobacter h...   151   2e-35
ref|ZP_01045089.1| hypothetical protein NB311A_08088 [Nitrobacte...   151   4e-35
ref|YP_530180.1| DNA polymerase III subunit delta [Rhodopseudomo...   150   7e-35

>ref|NP_767269.1| DNA polymerase III subunit delta [Bradyrhizobium japonicum USDA
          110]
 dbj|BAC45894.1| blr0629 [Bradyrhizobium japonicum USDA 110]
          Length = 342

 Score =  156 bits (394), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 78/92 (84%), Positives = 85/92 (92%)

Query: 1  LVALRGKEIDSFLARPDAGRPIILLYGPDLGLVRERADALMASAVDDPNDPFSLVRLDGD 60
          +VALRGKEID+FLARPDAGRPI+LLYGPD GLVRERADAL+ASAVDDPNDPFSLVRLDGD
Sbjct: 1  MVALRGKEIDAFLARPDAGRPIVLLYGPDAGLVRERADALIASAVDDPNDPFSLVRLDGD 60

Query: 61 ELAAEPSRLVDEAMTVPLFGGRARATSQAASR 92
          EL+AEPSRLVDEAMTVPLFGG+     +A SR
Sbjct: 61 ELSAEPSRLVDEAMTVPLFGGQRAIRVRAGSR 92


>ref|ZP_08627881.1| DNA polymerase III delta subunit [Bradyrhizobiaceae bacterium
          SG-6C]
 gb|EGP09410.1| DNA polymerase III delta subunit [Bradyrhizobiaceae bacterium
          SG-6C]
          Length = 342

 Score =  154 bits (388), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 75/82 (91%), Positives = 78/82 (95%)

Query: 1  LVALRGKEIDSFLARPDAGRPIILLYGPDLGLVRERADALMASAVDDPNDPFSLVRLDGD 60
          +VALRGKEID+FLARPD  RPIILLYGPD GLVRERADALMAS VDDPNDPFSLVR+DGD
Sbjct: 1  MVALRGKEIDAFLARPDPSRPIILLYGPDTGLVRERADALMASGVDDPNDPFSLVRMDGD 60

Query: 61 ELAAEPSRLVDEAMTVPLFGGR 82
          ELAAEPSRLVDEAMTVPLFGGR
Sbjct: 61 ELAAEPSRLVDEAMTVPLFGGR 82


>ref|YP_575461.1| DNA polymerase III subunit delta [Nitrobacter hamburgensis X14]
 gb|ABE61001.1| DNA polymerase III, delta subunit [Nitrobacter hamburgensis X14]
          Length = 342

 Score =  151 bits (382), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 76/92 (82%), Positives = 83/92 (90%)

Query: 1  LVALRGKEIDSFLARPDAGRPIILLYGPDLGLVRERADALMASAVDDPNDPFSLVRLDGD 60
          +VALRGK++DSFLARPD GRPIILLYGPD GLVRERADALMASAVDDP+DPFSLVRLDGD
Sbjct: 1  MVALRGKDVDSFLARPDPGRPIILLYGPDAGLVRERADALMASAVDDPSDPFSLVRLDGD 60

Query: 61 ELAAEPSRLVDEAMTVPLFGGRARATSQAASR 92
          +LA EPSRLVDEAMTVPLFGGR     +A +R
Sbjct: 61 DLATEPSRLVDEAMTVPLFGGRRAIRVKAGTR 92


>ref|ZP_01045089.1| hypothetical protein NB311A_08088 [Nitrobacter sp. Nb-311A]
 gb|EAQ37094.1| hypothetical protein NB311A_08088 [Nitrobacter sp. Nb-311A]
          Length = 342

 Score =  151 bits (381), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 75/92 (81%), Positives = 83/92 (90%)

Query: 1  LVALRGKEIDSFLARPDAGRPIILLYGPDLGLVRERADALMASAVDDPNDPFSLVRLDGD 60
          +VALRGK+IDSFLARPD  RPIILLYGPD GL+RERA+ALM+SAVDDPNDPFSLVRLDGD
Sbjct: 1  MVALRGKDIDSFLARPDPARPIILLYGPDAGLIRERANALMSSAVDDPNDPFSLVRLDGD 60

Query: 61 ELAAEPSRLVDEAMTVPLFGGRARATSQAASR 92
          +L+AEPSRLVDEAMTVPLFGGR     +A SR
Sbjct: 61 DLSAEPSRLVDEAMTVPLFGGRRAIRIKAGSR 92


>ref|YP_530180.1| DNA polymerase III subunit delta [Rhodopseudomonas palustris
          BisB18]
 gb|ABD85861.1| DNA polymerase III, delta subunit [Rhodopseudomonas palustris
          BisB18]
          Length = 342

 Score =  150 bits (378), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 73/92 (79%), Positives = 84/92 (91%)

Query: 1  LVALRGKEIDSFLARPDAGRPIILLYGPDLGLVRERADALMASAVDDPNDPFSLVRLDGD 60
          +VALRG+E+DSFLARPD+GRPIILLYGPD GLVRERA+AL+ASAVDDP+DPFS VRLDGD
Sbjct: 1  MVALRGREVDSFLARPDSGRPIILLYGPDAGLVRERAEALIASAVDDPSDPFSTVRLDGD 60

Query: 61 ELAAEPSRLVDEAMTVPLFGGRARATSQAASR 92
          ELAAEPSRLVDEAMT+P+FGGR     +A S+
Sbjct: 61 ELAAEPSRLVDEAMTIPMFGGRRAIRVRAGSK 92