BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0192.0052.p (563 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767264.1| hypothetical protein blr0624 [Bradyrhizobium ja... 764 0.0 ref|YP_001236376.1| diguanylate cyclase [Bradyrhizobium sp. BTAi... 716 0.0 ref|YP_001202402.1| hypothetical protein BRADO0187 [Bradyrhizobi... 704 0.0 ref|NP_945639.1| diguanylate cyclase [Rhodopseudomonas palustris... 632 e-179 ref|YP_530177.1| diguanylate cyclase [Rhodopseudomonas palustris... 628 e-178 >ref|NP_767264.1| hypothetical protein blr0624 [Bradyrhizobium japonicum USDA 110] dbj|BAC45889.1| blr0624 [Bradyrhizobium japonicum USDA 110] Length = 571 Score = 764 bits (1972), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/550 (67%), Positives = 463/550 (84%), Gaps = 1/550 (0%) Query: 1 MSGVTFNRNRVRLKKVLGIRARLALLALMLVAPLMLDRVRTLEDSRSKQIAQAAAGYASL 60 M+ V+FNR R +LK+VLGIRARLALLA++LVAPLML+R+R+LE++R+ QIAQAAA + ++ Sbjct: 7 MANVSFNRKRAKLKQVLGIRARLALLAVILVAPLMLERIRSLENTRTSQIAQAAAEFNTV 66 Query: 61 TAHAAETQREVVSSVETMLKSAAYIRAS-GGIAQSCEVLRASLPTVLPWIRSIMFVSRDG 119 H+A+ QREV+SSVET+LKS A+IRAS GGI++SC+VLRASLP+ LPWIR+++ +DG Sbjct: 67 ARHSADAQREVISSVETILKSEAFIRASAGGISKSCDVLRASLPSNLPWIRTLLIAGQDG 126 Query: 120 LVQCSTLNAQVGLNVGDRDYFKKAQDNRGFVFSDYLRGRTNGRPMMMAAYPVAAINPEQD 179 +QC+T N VGL++ DR YF++AQ+ FV SD++ R P +MA YPV+A + D Sbjct: 127 RIQCATNNMYVGLDLSDRPYFQQAQETGRFVLSDFILSRPVPSPTVMAVYPVSAFSGVAD 186 Query: 180 AVVVAGINIDWLSQIMANLGGQPGMSAVLVDSTGVVIAAPADHASLIGRSLDTIPLMAAI 239 AVV+A +N+DW+S++M+NLGG+ G++AVLVDS G V+AAPAD S +GR LD +PLM+AI Sbjct: 187 AVVLATVNLDWMSKVMSNLGGRAGITAVLVDSAGTVLAAPADQHSAVGRPLDNMPLMSAI 246 Query: 240 AEKALSYDEPSGSVSFTASDGAQRTLSFARIAGTQSRLIVSMDEAKVTAAINREIRTAYL 299 A+KAL D+ GS+SF A+DG++R +S+ RIAGT +RLI S+DE KV+AA++R+IRTAYL Sbjct: 247 ADKALRSDQDEGSLSFLAADGSRRAVSYIRIAGTNARLIASIDEDKVSAAVSRDIRTAYL 306 Query: 300 QLGFVCLFVLLGALVGAERLVIHPIELMTGMARRFGEGDWSARVAKHKLPAEFVPLARAF 359 QL FV LFVLLGAL+ AE+LVI PIE++ MA+R GEGD SAR A+++LPAEFVPLARAF Sbjct: 307 QLAFVVLFVLLGALIAAEKLVIKPIEMLADMAKRLGEGDLSARAARNRLPAEFVPLARAF 366 Query: 360 NAMAAQLSQRERELVASNDRLTVMASIDALSGLANRRGFQSRLDFEWMRAQQYECELSLM 419 NAMAAQLSQREREL+ASNDRLTVMASID LSGLANRRGFQSRLDFEWMRAQQY +L+L+ Sbjct: 367 NAMAAQLSQRERELIASNDRLTVMASIDMLSGLANRRGFQSRLDFEWMRAQQYGSDLALL 426 Query: 420 MIDVDHFKLYNDTYGHPEGDACLTRIGEVLSGIAADTMGFAGRYGGEEFCLLLPNTDAAH 479 MIDVDHFKL+NDTYGH EGD+CLTR+GE LSGIAADTMGFA RYGGEEFCLLLPNTD Sbjct: 427 MIDVDHFKLFNDTYGHLEGDSCLTRLGESLSGIAADTMGFAARYGGEEFCLLLPNTDVDR 486 Query: 480 ALAIGETVRTAVLGLAVPHASSSHCVVTVSVGVATTKPNETQRPGDLIEAADAALYAAKR 539 A+ IGE VR AVL L +PH +S+H +VTVS+GVA KPNE RPGDLIEAADAALYAAK Sbjct: 487 AVEIGELVRAAVLRLCLPHITSAHMIVTVSIGVAAAKPNEAFRPGDLIEAADAALYAAKH 546 Query: 540 RGRNAVIEHG 549 RGRN V+EHG Sbjct: 547 RGRNNVVEHG 556 >ref|YP_001236376.1| diguanylate cyclase [Bradyrhizobium sp. BTAi1] gb|ABQ32470.1| diguanylate cyclase [Bradyrhizobium sp. BTAi1] Length = 565 Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/558 (62%), Positives = 444/558 (79%), Gaps = 1/558 (0%) Query: 1 MSGVTFNRNRVRLKKVLGIRARLALLALMLVAPLMLDRVRTLEDSRSKQIAQAAAGYASL 60 M + FNRNRV+L ++LGIRARLALLA++LVAPLML+R R+LE +R++QIA A+ + ++ Sbjct: 1 MPSIRFNRNRVKLNRLLGIRARLALLAVILVAPLMLERARSLETARTRQIALASEEFFNI 60 Query: 61 TAHAAETQREVVSSVETMLKSAAYIRASG-GIAQSCEVLRASLPTVLPWIRSIMFVSRDG 119 +A+ QREV+ SVET+LKS AY+RAS G+++SC++LRASLPT LPWIR++M RDG Sbjct: 61 ARQSADMQREVIMSVETVLKSTAYVRASASGVSRSCDMLRASLPTTLPWIRTLMIAGRDG 120 Query: 120 LVQCSTLNAQVGLNVGDRDYFKKAQDNRGFVFSDYLRGRTNGRPMMMAAYPVAAINPEQD 179 +QCST N VGL+ +R YF+ AQ+ R FVFSDYL + P++MAAYPVAAI E D Sbjct: 121 RIQCSTNNQYVGLDFSERPYFRGAQETRDFVFSDYLLSKPTHMPIVMAAYPVAAITGEPD 180 Query: 180 AVVVAGINIDWLSQIMANLGGQPGMSAVLVDSTGVVIAAPADHASLIGRSLDTIPLMAAI 239 AV++A +N++W+S+IM+NLG +PG++AVL+DS G V+AAP D LIGR LD++PL++A+ Sbjct: 181 AVMLASVNLEWMSKIMSNLGSRPGITAVLIDSEGTVLAAPTDRTELIGRPLDSVPLLSAV 240 Query: 240 AEKALSYDEPSGSVSFTASDGAQRTLSFARIAGTQSRLIVSMDEAKVTAAINREIRTAYL 299 AE A+S D+PS +VSFTA+DG++R ++F RIA T SRLIVS+DE +VTAAI+R+IR AYL Sbjct: 241 AETAMSSDKPSDTVSFTAADGSKRAINFTRIADTGSRLIVSIDETRVTAAIDRDIRNAYL 300 Query: 300 QLGFVCLFVLLGALVGAERLVIHPIELMTGMARRFGEGDWSARVAKHKLPAEFVPLARAF 359 Q G VCL VLLGAL+ AE+L++ P+ ++ A+RFG G WSARVA LP+EFVPLA++F Sbjct: 301 QAGLVCLIVLLGALIAAEKLIVKPVNMLAATAKRFGLGQWSARVATKNLPSEFVPLAKSF 360 Query: 360 NAMAAQLSQRERELVASNDRLTVMASIDALSGLANRRGFQSRLDFEWMRAQQYECELSLM 419 NAMAA+L QREREL+A+NDRLTVMASID LSGLANRRGFQ+ +D EW RA Q ELSL+ Sbjct: 361 NAMAAKLGQRERELIAANDRLTVMASIDMLSGLANRRGFQNHIDVEWARALQTGAELSLL 420 Query: 420 MIDVDHFKLYNDTYGHPEGDACLTRIGEVLSGIAADTMGFAGRYGGEEFCLLLPNTDAAH 479 MIDVDHFKLYNDTYGHPEGDACL+R+GE L+ IA T FAGRYGGEEFCLL+P DA Sbjct: 421 MIDVDHFKLYNDTYGHPEGDACLSRLGETLAQIAQATDAFAGRYGGEEFCLLIPGIDARQ 480 Query: 480 ALAIGETVRTAVLGLAVPHASSSHCVVTVSVGVATTKPNETQRPGDLIEAADAALYAAKR 539 A IGE +R AVL L +PHA+S++ VTVSVGVA+ +PN+ DLIEAADAALYAAK Sbjct: 481 AFEIGEQIRYAVLELNLPHATSAYRCVTVSVGVASARPNDALATTDLIEAADAALYAAKH 540 Query: 540 RGRNAVIEHGFLQTLDEA 557 GRN VI HG + + EA Sbjct: 541 HGRNTVIAHGLVDSAREA 558 >ref|YP_001202402.1| hypothetical protein BRADO0187 [Bradyrhizobium sp. ORS 278] emb|CAL74152.1| conserved hypothetical protein; putative signal peptide, putative diguanylate cyclase (GGDEF) domain [Bradyrhizobium sp. ORS 278] Length = 565 Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/556 (63%), Positives = 444/556 (79%), Gaps = 1/556 (0%) Query: 1 MSGVTFNRNRVRLKKVLGIRARLALLALMLVAPLMLDRVRTLEDSRSKQIAQAAAGYASL 60 M + FNRNRV+L +++GIRARLALLAL+LVAPLML+R R+LE +R++QIA A+ + +L Sbjct: 1 MPSIRFNRNRVKLNRLMGIRARLALLALILVAPLMLERARSLESARTRQIALASEEFFAL 60 Query: 61 TAHAAETQREVVSSVETMLKSAAYIRASG-GIAQSCEVLRASLPTVLPWIRSIMFVSRDG 119 +A+ QREV+ SVET+LKS AY+RAS GI++SC+++RASLPT LPWIR++M RDG Sbjct: 61 ARQSADMQREVIMSVETVLKSTAYVRASAAGISRSCDMMRASLPTTLPWIRTLMIAGRDG 120 Query: 120 LVQCSTLNAQVGLNVGDRDYFKKAQDNRGFVFSDYLRGRTNGRPMMMAAYPVAAINPEQD 179 +QCST N VGL+ DR YF+ AQ+ R FVFSDYL + P++MAAYPV AI E D Sbjct: 121 RIQCSTNNQYVGLDFSDRPYFRGAQEARDFVFSDYLLSKPTQMPIVMAAYPVGAITGEPD 180 Query: 180 AVVVAGINIDWLSQIMANLGGQPGMSAVLVDSTGVVIAAPADHASLIGRSLDTIPLMAAI 239 AV++A +N++W+S+IM+NLGG+PG++AVL+DS G V+AAPAD LIGR LD++PL++A+ Sbjct: 181 AVMLASVNLEWMSKIMSNLGGRPGITAVLIDSEGTVLAAPADRTELIGRPLDSVPLLSAV 240 Query: 240 AEKALSYDEPSGSVSFTASDGAQRTLSFARIAGTQSRLIVSMDEAKVTAAINREIRTAYL 299 AE A+S + S ++SFTA+DG++R ++F RI T SRLIVS+DE +VTAAI+REIR AYL Sbjct: 241 AETAMSSSKQSDTMSFTAADGSKRAITFTRITDTGSRLIVSIDETRVTAAIDREIRNAYL 300 Query: 300 QLGFVCLFVLLGALVGAERLVIHPIELMTGMARRFGEGDWSARVAKHKLPAEFVPLARAF 359 Q G VCL VLLGAL+ AE+L++ P+ ++ A+RFG G WSARVA LP+EFVPLA++F Sbjct: 301 QAGLVCLMVLLGALIAAEKLIVKPVNMLAATAKRFGLGHWSARVATKHLPSEFVPLAKSF 360 Query: 360 NAMAAQLSQRERELVASNDRLTVMASIDALSGLANRRGFQSRLDFEWMRAQQYECELSLM 419 NAMAA+L QRERELVA+NDRLTVMASID LSGLANRRGFQ+R+D EW RAQQ +LSL+ Sbjct: 361 NAMAAKLGQRERELVAANDRLTVMASIDMLSGLANRRGFQNRIDVEWDRAQQTGSDLSLL 420 Query: 420 MIDVDHFKLYNDTYGHPEGDACLTRIGEVLSGIAADTMGFAGRYGGEEFCLLLPNTDAAH 479 MIDVDHFKLYNDTYGHPEGDACL+R+GE L+ IA T FAGRYGGEEFCLLLP A Sbjct: 421 MIDVDHFKLYNDTYGHPEGDACLSRLGETLAQIAGATTAFAGRYGGEEFCLLLPGMSARQ 480 Query: 480 ALAIGETVRTAVLGLAVPHASSSHCVVTVSVGVATTKPNETQRPGDLIEAADAALYAAKR 539 AL IGE VR AVL L +PHA+S H VTVSVGVA+T+PN P DLIEAADAALYAAK Sbjct: 481 ALEIGELVRAAVLELELPHATSVHQCVTVSVGVASTRPNAALTPADLIEAADAALYAAKH 540 Query: 540 RGRNAVIEHGFLQTLD 555 RGRN V+ HGF L+ Sbjct: 541 RGRNTVVAHGFGDVLE 556 >ref|NP_945639.1| diguanylate cyclase [Rhodopseudomonas palustris CGA009] ref|YP_001989325.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1] emb|CAE25730.1| putative diguanylate cyclase (GGDEF) with HAMP domain [Rhodopseudomonas palustris CGA009] gb|ACE98849.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1] Length = 557 Score = 632 bits (1630), Expect = e-179, Method: Compositional matrix adjust. Identities = 327/556 (58%), Positives = 415/556 (74%), Gaps = 7/556 (1%) Query: 1 MSGVTFNRNRVRLKKVLGIRARLALLALMLVAPLMLDRVRTLEDSRSKQIAQAAAGYASL 60 MS + R + +L+ +LGIRARL +LAL+LV PLMLDRVR LE +R+ Q+A A ++L Sbjct: 1 MSRIAIVRKKAKLRALLGIRARLVVLALILVCPLMLDRVRLLEATRTAQLAAMANELSTL 60 Query: 61 TAHAAETQREVVSSVETMLKSAAYIRASGGI-AQSCEVLRASLPTVLPWIRSIMFVSRDG 119 A+ +REV+SSVE +LKSAAY+ A+ +SC +LRASL LP IR +M DG Sbjct: 61 AQRTADAEREVISSVEAVLKSAAYVHAAAAQAGRSCSILRASLRVDLPSIRMLMVAGPDG 120 Query: 120 LVQCSTLNAQVGLNVGDRDYFKKAQDNRGFVFSDYLRGRTNGRPMMMAAYPVAAINPEQD 179 +V CST + VG N+ DR YF+KA + FV SD+L GR + ++AAYPV+AI+ ++ Sbjct: 121 VVHCSTSSMFVGSNISDRPYFRKALETHDFVVSDFLVGRQTQKGTILAAYPVSAIDTGEE 180 Query: 180 AVVVAGINIDWLSQIMANLGGQPGMSAVLVDSTGVVIAAPADHASLIGRSLDTIPLMAAI 239 AV+VAG+N+DWLS +M++L G+ G++A L+D G V+AAP D SLIG+ LD + L+ A+ Sbjct: 181 AVIVAGMNLDWLSDMMSSLAGRAGVNAALIDGEGTVLAAPPDERSLIGKKLDRLALLPAM 240 Query: 240 AEKALSYDEPSGSVSFTASDGAQRTLSFARIAGTQSRLIVSMDEAKVTAAINREIRTAYL 299 AE P G S T D A R ++ +RI GT +RL+V++DE KV+A IN +IRTAYL Sbjct: 241 AET------PQGRSSITMRDDAGRLMTVSRIPGTSARLVVTVDENKVSAGINHDIRTAYL 294 Query: 300 QLGFVCLFVLLGALVGAERLVIHPIELMTGMARRFGEGDWSARVAKHKLPAEFVPLARAF 359 QL VCLFVLLGAL+ AERL++ PI ++TG+A++F EG+WSARVA+ +LP+EFVPLARAF Sbjct: 295 QLALVCLFVLLGALIAAERLIVQPISVLTGVAKKFAEGNWSARVARKRLPSEFVPLARAF 354 Query: 360 NAMAAQLSQRERELVASNDRLTVMASIDALSGLANRRGFQSRLDFEWMRAQQYECELSLM 419 NAMAAQL QRERELVASN RLTVMAS+D LSGLANRRG QSRLDFEWM+ QQ L+LM Sbjct: 355 NAMAAQLGQRERELVASNSRLTVMASMDLLSGLANRRGLQSRLDFEWMKGQQTGHRLALM 414 Query: 420 MIDVDHFKLYNDTYGHPEGDACLTRIGEVLSGIAADTMGFAGRYGGEEFCLLLPNTDAAH 479 MIDVDHFKL+ND+YGHPEGDACL+RIGE L+ +A T GFA RYGGEEFCLLLP T Sbjct: 415 MIDVDHFKLFNDSYGHPEGDACLSRIGETLAAVADQTGGFAARYGGEEFCLLLPETGIGR 474 Query: 480 ALAIGETVRTAVLGLAVPHASSSHCVVTVSVGVATTKPNETQRPGDLIEAADAALYAAKR 539 AL +GE VRT V LA+PH +S+ VTVS+GVA T P+E P +LIEAADAALYAAK Sbjct: 475 ALQVGELVRTTVEQLALPHKTSAFEHVTVSIGVACTLPSEHASPAELIEAADAALYAAKH 534 Query: 540 RGRNAVIEHGFLQTLD 555 RGRN V+EHGF++ D Sbjct: 535 RGRNNVVEHGFIRASD 550 >ref|YP_530177.1| diguanylate cyclase [Rhodopseudomonas palustris BisB18] gb|ABD85858.1| diguanylate cyclase [Rhodopseudomonas palustris BisB18] Length = 560 Score = 628 bits (1620), Expect = e-178, Method: Compositional matrix adjust. Identities = 325/571 (56%), Positives = 419/571 (73%), Gaps = 21/571 (3%) Query: 1 MSGVTFNRNRVRLKKVLGIRARLALLALMLVAPLMLDRVRTLEDSRSKQIAQAAAGYASL 60 MS + F R + + K + GIRARL LLAL+LV PLM++R+R+LED+R KQ++ A++ ++L Sbjct: 3 MSHIGFYRKKAKFKGIFGIRARLVLLALILVGPLMVERIRSLEDTRVKQVSMASSELSAL 62 Query: 61 TAHAAETQREVVSSVETMLKSAAYIRASGG-IAQSCEVLRASLPTVLPWIRSIMFVSRDG 119 A +QRE++SSVE +LKS+AYI AS I + C LRASL LP IR +M DG Sbjct: 63 AERTAASQREIISSVEAVLKSSAYIHASASRIGRGCATLRASLRVDLPSIRMLMVAGPDG 122 Query: 120 LVQCSTLNAQVGLNVGDRDYFKKAQDNRGFVFSDYLRGRTNGRPMMMAAYPVAAINPEQD 179 +V+CST VGLN+ DR YFKKA ++ FV SD+L GR G+ ++AAYPV+AI+ ++ Sbjct: 123 VVRCSTSTMFVGLNISDRSYFKKAMESHDFVVSDFLVGRQTGKGTILAAYPVSAIDSGEE 182 Query: 180 AVVVAGINIDWLSQIMANLGGQPGMSAVLVDSTGVVIAAPADHASLIGRSL--DTIPLMA 237 AV+VAG+N+DW+S +M NLGG+PG++A LVD G+V+A P D SL+G+ P+ Sbjct: 183 AVLVAGLNLDWMSGVMGNLGGRPGVTAALVDGDGIVLATPPDQMSLVGQPFVGPAQPVSP 242 Query: 238 AI-----AEKALSYDEPSGSVSFTASDGAQRTLSFARIAGTQSRLIVSMDEAKVTAAINR 292 + E+A S + P G R + FA I GT +RL+V++DEAKV+A INR Sbjct: 243 GLNDLGAEERAFSGEAP----------GNNRAVYFAPIRGTTARLVVAVDEAKVSAGINR 292 Query: 293 EIRTAYLQLGFVCLFVLLGALVGAERLVIHPIELMTGMARRFGEGDWSARVAKHKLPAEF 352 +IRTAYLQL VC VLLGAL+ AERL++ P+ +MT +A++FG+GDWSARV + +LPAEF Sbjct: 293 DIRTAYLQLFLVCFIVLLGALIAAERLIVKPVNMMTEVAKKFGQGDWSARVCRKRLPAEF 352 Query: 353 VPLARAFNAMAAQLSQRERELVASNDRLTVMASIDALSGLANRRGFQSRLDFEWMRAQQY 412 VPLARAFNAMAA L +RER LVA N+RLTVMASID LSGLANRRGFQSRLDFEWM+A+Q Sbjct: 353 VPLARAFNAMAAHLVERERGLVAINNRLTVMASIDVLSGLANRRGFQSRLDFEWMKAEQN 412 Query: 413 ECELSLMMIDVDHFKLYNDTYGHPEGDACLTRIGEVLSGIAADTMGFAGRYGGEEFCLLL 472 ++ L+MIDVDHFK +NDTYGHPEGDAC++RIGE L+ IA D GFA RYGGEEFCLLL Sbjct: 413 GTDVGLLMIDVDHFKPFNDTYGHPEGDACISRIGETLAAIANDIGGFAARYGGEEFCLLL 472 Query: 473 PNTDAAHALAIGETVRTAVLGLAVPHASSSHCVVTVSVGVATTKPNETQRPGDLIEAADA 532 TD A +GE VR+A+ LA+PH +S VTVSVGVA T P+ P DLIEAADA Sbjct: 473 AETDRAS--EVGEMVRSAIAHLAIPHRTSVFQQVTVSVGVACTVPHPANSPRDLIEAADA 530 Query: 533 ALYAAKRRGRNAVIEHGFLQTLDEAGMALAS 563 ALYAAK RGRNAV+EHGF++ D +G+++AS Sbjct: 531 ALYAAKHRGRNAVVEHGFIRGSD-SGLSMAS 560