BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0192.0048.p         (228 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_767260.1| two-component response regulator [Bradyrhizobiu...   463   e-128
ref|ZP_08627887.1| DNA-binding response regulator [Bradyrhizobia...   455   e-126
ref|YP_484003.1| two component transcriptional regulator [Rhodop...   451   e-125
ref|YP_567579.1| winged helix family two component transcription...   447   e-124
ref|YP_316707.1| transcriptional regulatory protein [Nitrobacter...   444   e-123

>ref|NP_767260.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 dbj|BAC45885.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 228

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 226/228 (99%), Positives = 227/228 (99%)

Query: 1   MANARKILIVDDDTDLRDTLVEQLSLHEEFEASAVDTGAKGATAAKANSPDLVLMDVGLP 60
           MANARKILIVDDDTDLRDTLVEQLSLHEEFEASAVDTGAKGA+AAKANSPDLVLMDVGLP
Sbjct: 1   MANARKILIVDDDTDLRDTLVEQLSLHEEFEASAVDTGAKGASAAKANSPDLVLMDVGLP 60

Query: 61  DTDGREVVRSLRKGGFKAPIIMLTGHDTDSDTILGLESGANDYVAKPFRFAVLLARIRAQ 120
           DTDGREVVRSLRKGGFKAPIIMLTGHDTDSDTILGLESGANDYVAKPFRFAVLLARIRAQ
Sbjct: 61  DTDGREVVRSLRKGGFKAPIIMLTGHDTDSDTILGLESGANDYVAKPFRFAVLLARIRAQ 120

Query: 121 LRQHEASEDAVFSVGPYSFRPGSKMLTGANARKVRLTEKETAILRFLYRAGQMPVSRETL 180
           LRQHEASEDAVFSVGPYSFRPGSKMLT ANARKVRLTEKETAILRFLYRAGQMPVSRETL
Sbjct: 121 LRQHEASEDAVFSVGPYSFRPGSKMLTAANARKVRLTEKETAILRFLYRAGQMPVSRETL 180

Query: 181 LQEVWGYNSGVTTHTLETHIYRLRQKIEKDAANPEILVTEAGGYKLVP 228
           LQEVWGYNSGVTTHTLETHIYRLRQKIEKDAANPEILVTEAGGYKLVP
Sbjct: 181 LQEVWGYNSGVTTHTLETHIYRLRQKIEKDAANPEILVTEAGGYKLVP 228


>ref|ZP_08627887.1| DNA-binding response regulator [Bradyrhizobiaceae bacterium SG-6C]
 gb|EGP09416.1| DNA-binding response regulator [Bradyrhizobiaceae bacterium SG-6C]
          Length = 228

 Score =  455 bits (1170), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 220/228 (96%), Positives = 226/228 (99%)

Query: 1   MANARKILIVDDDTDLRDTLVEQLSLHEEFEASAVDTGAKGATAAKANSPDLVLMDVGLP 60
           MANARKILIVDDDTDLRD LVEQLSLHEEFEASAVDTGAKGA AAK+NSPDLVLMDVGLP
Sbjct: 1   MANARKILIVDDDTDLRDALVEQLSLHEEFEASAVDTGAKGALAAKSNSPDLVLMDVGLP 60

Query: 61  DTDGREVVRSLRKGGFKAPIIMLTGHDTDSDTILGLESGANDYVAKPFRFAVLLARIRAQ 120
           DTDGREVVRSLRKGGFK+PIIMLTGHDTDSDTILGLESGANDYVAKPFRFAVLLARIRAQ
Sbjct: 61  DTDGREVVRSLRKGGFKSPIIMLTGHDTDSDTILGLESGANDYVAKPFRFAVLLARIRAQ 120

Query: 121 LRQHEASEDAVFSVGPYSFRPGSKMLTGANARKVRLTEKETAILRFLYRAGQMPVSRETL 180
           LRQHEASEDAVF+VGPYSFRPGSKMLTGANA+KVRLTEKETAILRFLYRAGQMPVSRETL
Sbjct: 121 LRQHEASEDAVFTVGPYSFRPGSKMLTGANAKKVRLTEKETAILRFLYRAGQMPVSRETL 180

Query: 181 LQEVWGYNSGVTTHTLETHIYRLRQKIEKDAANPEILVTEAGGYKLVP 228
           LQEVWGYNSGVTTHTLETHIYRLRQK+EKDAANPEILVTE+GGYKLVP
Sbjct: 181 LQEVWGYNSGVTTHTLETHIYRLRQKVEKDAANPEILVTESGGYKLVP 228


>ref|YP_484003.1| two component transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gb|ABD05092.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris HaA2]
          Length = 228

 Score =  451 bits (1161), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 220/228 (96%), Positives = 223/228 (97%)

Query: 1   MANARKILIVDDDTDLRDTLVEQLSLHEEFEASAVDTGAKGATAAKANSPDLVLMDVGLP 60
           M NARKILIVDDDTDLRD LVEQLSLHEEFEASAVDTGAKG  +AKANSPDLVLMDVGLP
Sbjct: 1   MPNARKILIVDDDTDLRDALVEQLSLHEEFEASAVDTGAKGVQSAKANSPDLVLMDVGLP 60

Query: 61  DTDGREVVRSLRKGGFKAPIIMLTGHDTDSDTILGLESGANDYVAKPFRFAVLLARIRAQ 120
           DTDGREVVRSLRKGGFKAPIIMLTGHDTDSDTILGLESGANDYVAKPFRFAVLLARIRAQ
Sbjct: 61  DTDGREVVRSLRKGGFKAPIIMLTGHDTDSDTILGLESGANDYVAKPFRFAVLLARIRAQ 120

Query: 121 LRQHEASEDAVFSVGPYSFRPGSKMLTGANARKVRLTEKETAILRFLYRAGQMPVSRETL 180
           LRQHEASEDAVF+VGPYSFRPGSKMLTGANA+KVRLTEKETAILRFLYRAGQ PVSRETL
Sbjct: 121 LRQHEASEDAVFTVGPYSFRPGSKMLTGANAKKVRLTEKETAILRFLYRAGQAPVSRETL 180

Query: 181 LQEVWGYNSGVTTHTLETHIYRLRQKIEKDAANPEILVTEAGGYKLVP 228
           LQEVWGYNSGVTTHTLETHIYRLRQKIEKDAANPEILVTEAGGYKLVP
Sbjct: 181 LQEVWGYNSGVTTHTLETHIYRLRQKIEKDAANPEILVTEAGGYKLVP 228


>ref|YP_567579.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris BisB5]
 gb|ABE37678.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB5]
          Length = 228

 Score =  447 bits (1151), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 218/228 (95%), Positives = 222/228 (97%)

Query: 1   MANARKILIVDDDTDLRDTLVEQLSLHEEFEASAVDTGAKGATAAKANSPDLVLMDVGLP 60
           M NARKILIVDDDTDLR+ LVEQLSLHEEFEASAVDTGAKG  +AKANSPDLVLMDVGLP
Sbjct: 1   MPNARKILIVDDDTDLREALVEQLSLHEEFEASAVDTGAKGVQSAKANSPDLVLMDVGLP 60

Query: 61  DTDGREVVRSLRKGGFKAPIIMLTGHDTDSDTILGLESGANDYVAKPFRFAVLLARIRAQ 120
           DTDGREVVRSLRKGGFKAPIIMLTGHDTDSDTILGLESGANDYVAKPFRFAVLLARIRAQ
Sbjct: 61  DTDGREVVRSLRKGGFKAPIIMLTGHDTDSDTILGLESGANDYVAKPFRFAVLLARIRAQ 120

Query: 121 LRQHEASEDAVFSVGPYSFRPGSKMLTGANARKVRLTEKETAILRFLYRAGQMPVSRETL 180
           LRQHEASEDAVF+VGPYSFRPGSKMLTGANA+KVRLTEKETAILRFLYRA Q PVSRETL
Sbjct: 121 LRQHEASEDAVFTVGPYSFRPGSKMLTGANAKKVRLTEKETAILRFLYRASQSPVSRETL 180

Query: 181 LQEVWGYNSGVTTHTLETHIYRLRQKIEKDAANPEILVTEAGGYKLVP 228
           LQEVWGYNSGVTTHTLETHIYRLRQKIEKDAANPEILVTEAGGYKLVP
Sbjct: 181 LQEVWGYNSGVTTHTLETHIYRLRQKIEKDAANPEILVTEAGGYKLVP 228


>ref|YP_316707.1| transcriptional regulatory protein [Nitrobacter winogradskyi
           Nb-255]
 gb|ABA03355.1| two component transcriptional regulator, winged helix family
           [Nitrobacter winogradskyi Nb-255]
          Length = 228

 Score =  444 bits (1141), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 215/228 (94%), Positives = 222/228 (97%)

Query: 1   MANARKILIVDDDTDLRDTLVEQLSLHEEFEASAVDTGAKGATAAKANSPDLVLMDVGLP 60
           MANARKILIVDDD DLRDTLVEQLSLHEEFEASAVDTGAKGA+AA++ SPDLVLMDVGLP
Sbjct: 1   MANARKILIVDDDNDLRDTLVEQLSLHEEFEASAVDTGAKGASAARSCSPDLVLMDVGLP 60

Query: 61  DTDGREVVRSLRKGGFKAPIIMLTGHDTDSDTILGLESGANDYVAKPFRFAVLLARIRAQ 120
           DTDGREVVRSLRKGGFKAPIIMLTGHDTDSDTILGLESGANDY+AKPFRFAVLLARIRAQ
Sbjct: 61  DTDGREVVRSLRKGGFKAPIIMLTGHDTDSDTILGLESGANDYIAKPFRFAVLLARIRAQ 120

Query: 121 LRQHEASEDAVFSVGPYSFRPGSKMLTGANARKVRLTEKETAILRFLYRAGQMPVSRETL 180
           LRQHEASEDAVFSVGPYSFRPG+KMLT  N +KVRLTEKETAILRFLYRAGQM VSR+TL
Sbjct: 121 LRQHEASEDAVFSVGPYSFRPGAKMLTTGNGKKVRLTEKETAILRFLYRAGQMSVSRDTL 180

Query: 181 LQEVWGYNSGVTTHTLETHIYRLRQKIEKDAANPEILVTEAGGYKLVP 228
           LQEVWGYNSGVTTHTLETHIYRLRQKIEKDAANPEILVTEAGGYKLVP
Sbjct: 181 LQEVWGYNSGVTTHTLETHIYRLRQKIEKDAANPEILVTEAGGYKLVP 228