BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0192.0046.p (271 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001202396.1| putative exodeoxyribonuclease III (xthA) [Br... 514 e-144 ref|NP_767258.1| exodeoxyribonuclease III [Bradyrhizobium japoni... 510 e-143 ref|YP_001236382.1| putative exodeoxyribonuclease III (xthA) [Br... 505 e-141 ref|ZP_08627889.1| exodeoxyribonuclease III [Bradyrhizobiaceae b... 484 e-135 ref|ZP_07026376.1| exodeoxyribonuclease III Xth [Afipia sp. 1NLS... 481 e-134 >ref|YP_001202396.1| putative exodeoxyribonuclease III (xthA) [Bradyrhizobium sp. ORS 278] emb|CAL74146.1| putative exodeoxyribonuclease III (xthA) [Bradyrhizobium sp. ORS 278] Length = 271 Score = 514 bits (1324), Expect = e-144, Method: Compositional matrix adjust. Identities = 240/271 (88%), Positives = 259/271 (95%) Query: 1 MRFSVTTWNINSVRLRIDTVAKFLKGARPDVLCLQETKCIDDAFPLKRFKRLGYEHVALN 60 MR +TTWNINSVRLRID VAKF+K RPDVLCLQETKCIDDAFPLKRFKRLGYEHVALN Sbjct: 1 MRLVLTTWNINSVRLRIDLVAKFIKQVRPDVLCLQETKCIDDAFPLKRFKRLGYEHVALN 60 Query: 61 GQKGYHGVAIVSRLPFETTDIRTFCDKIDSRHISVSFGEKAQLSKPLVLHNFYVPAGGDI 120 GQKGYHGVA++S+ PFE+T +RTFCDK+DSRHI+V+FGEKAQL++PLVLHNFYVPAGGDI Sbjct: 61 GQKGYHGVAVISKWPFESTHVRTFCDKVDSRHITVAFGEKAQLAQPLVLHNFYVPAGGDI 120 Query: 121 PDPALNPKFEHKLQFLDEMKACEPLHPRGDDRHILVGDLNVAPHENDVWSHKQLLKVVSH 180 PDPALNPKFEHKLQFLDEMKACEPLHPRGDDRHILVGDLNVAPHE+DVWSHKQLLKVVSH Sbjct: 121 PDPALNPKFEHKLQFLDEMKACEPLHPRGDDRHILVGDLNVAPHEHDVWSHKQLLKVVSH 180 Query: 181 TPVETEKLLAAQAHGEWFDIARERIPMSEKVYTWWSYRAADWTVGDRGRRLDHIWVSRAL 240 TP+ETEKLLAAQ+HGEW D+ARERIPMSEKVYTWWSYRAADWTVGDRGRRLDHIWVSRAL Sbjct: 181 TPIETEKLLAAQSHGEWVDVARERIPMSEKVYTWWSYRAADWTVGDRGRRLDHIWVSRAL 240 Query: 241 KDQVSDFKITRDARSWERPSDHVPVTAVMEV 271 KD+VSDF I RDARSWERPSDHVPVT ++V Sbjct: 241 KDRVSDFDILRDARSWERPSDHVPVTVTLDV 271 >ref|NP_767258.1| exodeoxyribonuclease III [Bradyrhizobium japonicum USDA 110] dbj|BAC45883.1| exodeoxyribonuclease III [Bradyrhizobium japonicum USDA 110] Length = 271 Score = 510 bits (1314), Expect = e-143, Method: Compositional matrix adjust. Identities = 242/271 (89%), Positives = 254/271 (93%) Query: 1 MRFSVTTWNINSVRLRIDTVAKFLKGARPDVLCLQETKCIDDAFPLKRFKRLGYEHVALN 60 MR S+TTWNINSVRLRID VAKFLK ARPDVLCLQETKCIDDAFPLKRFKRLGYEHVALN Sbjct: 1 MRLSLTTWNINSVRLRIDLVAKFLKSARPDVLCLQETKCIDDAFPLKRFKRLGYEHVALN 60 Query: 61 GQKGYHGVAIVSRLPFETTDIRTFCDKIDSRHISVSFGEKAQLSKPLVLHNFYVPAGGDI 120 GQKGYHGVAIVSR+PFE+ DIRTFCDK+DSRHISVSFG +A ++KPLVLHNFYVPAGGDI Sbjct: 61 GQKGYHGVAIVSRIPFESKDIRTFCDKVDSRHISVSFGTQANIAKPLVLHNFYVPAGGDI 120 Query: 121 PDPALNPKFEHKLQFLDEMKACEPLHPRGDDRHILVGDLNVAPHENDVWSHKQLLKVVSH 180 PDPALN KF+HKL+FLDEM ACEPLHPRGDDRHILVGDLNVAPHENDVWSHKQLLKVVSH Sbjct: 121 PDPALNEKFDHKLRFLDEMTACEPLHPRGDDRHILVGDLNVAPHENDVWSHKQLLKVVSH 180 Query: 181 TPVETEKLLAAQAHGEWFDIARERIPMSEKVYTWWSYRAADWTVGDRGRRLDHIWVSRAL 240 TPVETEKL AA A GEW D+ARERIPMSEKVYTWWSYR+ADWTVGDRGRRLDHIWVSRAL Sbjct: 181 TPVETEKLKAALAAGEWVDVARERIPMSEKVYTWWSYRSADWTVGDRGRRLDHIWVSRAL 240 Query: 241 KDQVSDFKITRDARSWERPSDHVPVTAVMEV 271 KD V DFKI RDARSWERPSDHVPVT +EV Sbjct: 241 KDAVQDFKILRDARSWERPSDHVPVTVTLEV 271 >ref|YP_001236382.1| putative exodeoxyribonuclease III (xthA) [Bradyrhizobium sp. BTAi1] gb|ABQ32476.1| putative exodeoxyribonuclease III (xthA) [Bradyrhizobium sp. BTAi1] Length = 271 Score = 505 bits (1301), Expect = e-141, Method: Compositional matrix adjust. Identities = 234/271 (86%), Positives = 255/271 (94%) Query: 1 MRFSVTTWNINSVRLRIDTVAKFLKGARPDVLCLQETKCIDDAFPLKRFKRLGYEHVALN 60 MR +TTWNINSVRLRID VAK +K RPDVLCLQETKCIDDAFPLKRFKRLGYEH+ALN Sbjct: 1 MRLVLTTWNINSVRLRIDLVAKLIKQVRPDVLCLQETKCIDDAFPLKRFKRLGYEHIALN 60 Query: 61 GQKGYHGVAIVSRLPFETTDIRTFCDKIDSRHISVSFGEKAQLSKPLVLHNFYVPAGGDI 120 GQKGYHGVA++S+ PF++T +RTFCDK+DSRHISV+FGEKAQL++PLVLHNFYVPAGGDI Sbjct: 61 GQKGYHGVAVISKWPFDSTGVRTFCDKVDSRHISVAFGEKAQLARPLVLHNFYVPAGGDI 120 Query: 121 PDPALNPKFEHKLQFLDEMKACEPLHPRGDDRHILVGDLNVAPHENDVWSHKQLLKVVSH 180 PDPALNPKFEHKLQFLDEMKACEPLHPRGDDRHILVGDLNVAPHE+DVWSHKQLLKVVSH Sbjct: 121 PDPALNPKFEHKLQFLDEMKACEPLHPRGDDRHILVGDLNVAPHEHDVWSHKQLLKVVSH 180 Query: 181 TPVETEKLLAAQAHGEWFDIARERIPMSEKVYTWWSYRAADWTVGDRGRRLDHIWVSRAL 240 TP+E EKLLAAQ+HG W D+ARERIPMSEKVYTWWSYRAADWTVG+RGRRLDHIWVSRAL Sbjct: 181 TPIECEKLLAAQSHGAWVDVARERIPMSEKVYTWWSYRAADWTVGNRGRRLDHIWVSRAL 240 Query: 241 KDQVSDFKITRDARSWERPSDHVPVTAVMEV 271 KD V+DF I RDARSWERPSDHVPVT ++V Sbjct: 241 KDNVTDFSILRDARSWERPSDHVPVTVTLDV 271 >ref|ZP_08627889.1| exodeoxyribonuclease III [Bradyrhizobiaceae bacterium SG-6C] gb|EGP09418.1| exodeoxyribonuclease III [Bradyrhizobiaceae bacterium SG-6C] Length = 271 Score = 484 bits (1246), Expect = e-135, Method: Compositional matrix adjust. Identities = 221/271 (81%), Positives = 248/271 (91%) Query: 1 MRFSVTTWNINSVRLRIDTVAKFLKGARPDVLCLQETKCIDDAFPLKRFKRLGYEHVALN 60 MR ++TTWNINSVRLRID VAKF+K RPDVLCLQETKCIDDAFPLKRFKRLGYEHVALN Sbjct: 1 MRLTLTTWNINSVRLRIDLVAKFIKAVRPDVLCLQETKCIDDAFPLKRFKRLGYEHVALN 60 Query: 61 GQKGYHGVAIVSRLPFETTDIRTFCDKIDSRHISVSFGEKAQLSKPLVLHNFYVPAGGDI 120 GQKGYHGVAIVS++PF++ D+RTFC K+DSRHISVSFGE+AQ++KPL LHNFYVPAGGDI Sbjct: 61 GQKGYHGVAIVSKIPFDSRDVRTFCGKVDSRHISVSFGEQAQIAKPLTLHNFYVPAGGDI 120 Query: 121 PDPALNPKFEHKLQFLDEMKACEPLHPRGDDRHILVGDLNVAPHENDVWSHKQLLKVVSH 180 PDP LNPKFEHKL FLDEM+ C PLHPR DDRHILVGDLNVAPHE+DVWSHKQLLK+VSH Sbjct: 121 PDPVLNPKFEHKLSFLDEMRDCAPLHPRADDRHILVGDLNVAPHEHDVWSHKQLLKIVSH 180 Query: 181 TPVETEKLLAAQAHGEWFDIARERIPMSEKVYTWWSYRAADWTVGDRGRRLDHIWVSRAL 240 TP+E EKLLA Q+ G+W DIAR+RIP+SEKVYTWWSYR+ADW ++GRRLDHIWVS+AL Sbjct: 181 TPIECEKLLAVQSQGDWIDIARQRIPLSEKVYTWWSYRSADWVAANKGRRLDHIWVSKAL 240 Query: 241 KDQVSDFKITRDARSWERPSDHVPVTAVMEV 271 D V DF+ITRDAR WERPSDHVPVTAV++V Sbjct: 241 GDSVRDFRITRDARGWERPSDHVPVTAVLDV 271 >ref|ZP_07026376.1| exodeoxyribonuclease III Xth [Afipia sp. 1NLS2] gb|EFI53518.1| exodeoxyribonuclease III Xth [Afipia sp. 1NLS2] Length = 271 Score = 481 bits (1239), Expect = e-134, Method: Compositional matrix adjust. Identities = 227/271 (83%), Positives = 246/271 (90%) Query: 1 MRFSVTTWNINSVRLRIDTVAKFLKGARPDVLCLQETKCIDDAFPLKRFKRLGYEHVALN 60 M F++TTWNINSVRLRID VAKFLK RPDVLCLQETKCIDDAFPLKRF+RLGYEH+ALN Sbjct: 1 MPFTLTTWNINSVRLRIDLVAKFLKSRRPDVLCLQETKCIDDAFPLKRFQRLGYEHIALN 60 Query: 61 GQKGYHGVAIVSRLPFETTDIRTFCDKIDSRHISVSFGEKAQLSKPLVLHNFYVPAGGDI 120 GQKGYHGVAIVS+ PF + D+RTFC KIDSRHISV+FGE A LS PLVLHNFYVPAGGDI Sbjct: 61 GQKGYHGVAIVSKRPFVSKDVRTFCGKIDSRHISVAFGESAGLSAPLVLHNFYVPAGGDI 120 Query: 121 PDPALNPKFEHKLQFLDEMKACEPLHPRGDDRHILVGDLNVAPHENDVWSHKQLLKVVSH 180 PDPA NPKFEHKL FLDEM+ C PLHP+GD RHILVGDLNVAPHE+DVWSHKQLL VVSH Sbjct: 121 PDPAANPKFEHKLSFLDEMRDCAPLHPQGDARHILVGDLNVAPHEHDVWSHKQLLNVVSH 180 Query: 181 TPVETEKLLAAQAHGEWFDIARERIPMSEKVYTWWSYRAADWTVGDRGRRLDHIWVSRAL 240 TPVE EKLLA Q+ G W DIAR+RIPM EKVYTWWSYRAADWTVG+RGRRLDHIWVS AL Sbjct: 181 TPVECEKLLAVQSQGNWVDIARQRIPMDEKVYTWWSYRAADWTVGNRGRRLDHIWVSPAL 240 Query: 241 KDQVSDFKITRDARSWERPSDHVPVTAVMEV 271 D+VSDF+ITRDARSWERPSDHVPVTAV+++ Sbjct: 241 GDKVSDFRITRDARSWERPSDHVPVTAVLDI 271