BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0192.0028.p (398 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_06888660.1| conserved hypothetical protein [Methylosinus ... 164 3e-38 ref|ZP_07658364.1| polysaccharide biosynthesis protein [Roseibiu... 152 7e-35 ref|ZP_04680872.1| Hypothetical protein OINT_1001805 [Ochrobactr... 134 2e-29 ref|YP_004279810.1| hypothetical protein AGROH133_08718 [Agrobac... 134 2e-29 ref|YP_002283278.1| polysaccharide biosynthesis protein [Rhizobi... 134 3e-29 >ref|ZP_06888660.1| conserved hypothetical protein [Methylosinus trichosporium OB3b] gb|EFH02812.1| conserved hypothetical protein [Methylosinus trichosporium OB3b] Length = 600 Score = 164 bits (414), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 109/286 (38%), Positives = 162/286 (56%), Gaps = 23/286 (8%) Query: 104 VIFLNSGGVPHVGWARGTVEAARELAAAGVASLRIDLPGLGLSDDAGSNRLFLYDSSTRF 163 ++FLN G PH GW R TV AR+LA GVASLRID G+G D AG D++T+F Sbjct: 316 LLFLNCGANPHAGWRRMTVVQARDLARRGVASLRIDTSGIG--DSAGRT-----DAATKF 368 Query: 164 -------DVSAAIDWMQRAGFAKVELVGTCSGAFQAFHTARADRRVRALTMINPLCFAWN 216 + +AIDW+ G ++ LVG CSGA+QAFHTA D RV L ++NP+ F W+ Sbjct: 369 YAPHQIEEARSAIDWLVAQGAREITLVGVCSGAYQAFHTALEDGRVDDLVIVNPMTFVWD 428 Query: 217 SSYALELTAWKAYETSKANRGSQQQIGPADGPAMTTRSAWKLSVSDSARRLVRRGLEAVK 276 +Y++E K + S++N ++ ADG + + +++V A + R L+ +K Sbjct: 429 DAYSVEEFV-KLF--SRSNLTYFSRLAEADG--LMKLLSGRVAVGRLAGVVAERILDRIK 483 Query: 277 STLSAMHPSALLG--RNRVERWMRELCSRGVRVLMVTSDGDLSLQEIARHFGQDGKRLTS 334 + L++ P G R + R L +R VR+ +VT + DLS E+A+HFG+ G RL + Sbjct: 484 AQLASAIPW-FEGPIRREIHRLFSRLKARNVRISLVTCENDLSEDELAKHFGRGGARLRA 542 Query: 335 IPGVTRLTLPNADHSLTPRHARRAVVARLIDHRGGGRRGGSSRPDA 380 P V+R +P+ADH+LT + + A L+ R RG +RP A Sbjct: 543 YPNVSRSRIPDADHNLTTDASVEWLTAHLL-ARATESRGAPTRPAA 587 >ref|ZP_07658364.1| polysaccharide biosynthesis protein [Roseibium sp. TrichSKD4] gb|EFO33031.1| polysaccharide biosynthesis protein [Roseibium sp. TrichSKD4] Length = 574 Score = 152 bits (385), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 117/360 (32%), Positives = 170/360 (47%), Gaps = 21/360 (5%) Query: 15 GATIAE--FKDYHLLMCDPTANRIPADVVGCWADWLSDRAVAGVAQGVDSLTGRELLEGS 72 G ++E F Y L+ DPTA+ IP V+ DW + + A + T + GS Sbjct: 219 GCPVSEIAFDGYTQLLEDPTASIIPDQVLSQIVDWCIEHSSAATSIFPLQTTWSTHVSGS 278 Query: 73 HYTEEPVVIRQAPLICGVLTRPRDGHAAADPVIFLNSGGVPHVGWARGTVEAARELAAAG 132 Y EE V+I + + GVL P A +IFLNSG H GWAR VEA+R A+ G Sbjct: 279 GYIEEGVIIEGSAPLYGVLCSPEASEPDAPALIFLNSGYDHHGGWARAWVEASRRCASKG 338 Query: 133 VASLRIDLPGLGLSDDAGSN-RLFLYDSSTRFDVSAAIDWMQRAGFAKVELVGTCSGAFQ 191 LR D +G S A S LY D SA ID+++ + LVG CSGA+ Sbjct: 339 ALCLRADFANIGDSPPANSEPEQVLYTEGPIKDTSALIDFIRTKTSGPITLVGRCSGAYT 398 Query: 192 AFHTARADRRVRALTMINPLCFAWNSSYALELTAWKAYETSKANRGSQQQIGPADGPAMT 251 AF A D R+ L + N + W+ +L + R + +G Sbjct: 399 AFQAAFRDDRITQLFLCNQVRLIWDPEESL----------TDPTRMGPRSMGDYKKRFGD 448 Query: 252 TRSAWKLSVSDSARRLVRRGLEA-----VKSTLSAMHPS-ALLGRNRVE--RWMRELCSR 303 ++ +L D + V RGL + V ++ + P+ + GR R E + L +R Sbjct: 449 PKTLKRLLTGDISIPGVMRGLSSHAVTRVSHMIAPVWPNISKHGRFRQECHEIFKALRAR 508 Query: 304 GVRVLMVTSDGDLSLQEIARHFGQDGKRLTSIPGVTRLTLPNADHSLTPRHARRAVVARL 363 V + + S+GD SL+++A +FG+D K L + P VT +PNADH+LTP AR + L Sbjct: 509 DVSMYFLCSEGDQSLEQLALYFGKDRKGLRAYPNVTLTKVPNADHNLTPPAARESFFGYL 568 >ref|ZP_04680872.1| Hypothetical protein OINT_1001805 [Ochrobactrum intermedium LMG 3301] gb|EEQ96378.1| Hypothetical protein OINT_1001805 [Ochrobactrum intermedium LMG 3301] Length = 611 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 102/351 (29%), Positives = 159/351 (45%), Gaps = 18/351 (5%) Query: 17 TIAEFKDYHLLMCDPTANRIPADVVGCWADWLSDRAVAGVAQGV-DSLTGRELLEGSHYT 75 T+ F DY L+ +P +R+P +V G DW++ A + AQ D L G + Sbjct: 263 TVEAFADYDKLISNPVISRLPLEVAGRLVDWVAGLAGSTPAQNTPDESALGGTLRGDGFI 322 Query: 76 EEPVVIRQAPLICGVLTRPRDGHAAADPVIFLNSGGVPHVGWARGTVEAARELAAAGVAS 135 E PV + GVL P G V+FL+S VGW R TV+ AR+LA GVAS Sbjct: 323 ETPVSFGSENRLSGVLCAP-SGKQQGRTVMFLSSSYDRRVGWGRTTVDMARKLAREGVAS 381 Query: 136 LRIDLPGLGLSD-DAGSNRLFLYDSSTRFDVSAAIDWMQRAGFAKVELVGTCSGAFQAFH 194 LR D+ G S + G LY DV+ A+D+++ G+ + + G CSGAF F+ Sbjct: 382 LRFDIANAGDSPPNPGMPEQVLYTHGPEADVAEALDYLEVLGWGRPVVAGRCSGAFLGFN 441 Query: 195 TARADRRVRALTMINPLCFAWNSSYALELTAWKAYETSKANRGSQQQIGPADGPAMTTRS 254 TA D R+ ++NP+ F W +++ +A R + + A+ + Sbjct: 442 TALKDERISGAVLVNPVTFYWAPGRSID----------EALREGNRTLEDYGSRALRAET 491 Query: 255 AWKLSVSDSARRLVRRGL-EAVKSTLSAMHPSALLGRN----RVERWMRELCSRGVRVLM 309 +L + R + R L V + + L R V EL R V + + Sbjct: 492 FQRLLRGELDIRAILRNLTRGVAGRIRGLARKLLRSRTAEGRAVYSAFDELKQRDVPLAL 551 Query: 310 VTSDGDLSLQEIARHFGQDGKRLTSIPGVTRLTLPNADHSLTPRHARRAVV 360 V ++ D + +F Q G + V+ +P+ADH+LTP H+R+ + Sbjct: 552 VYAEKDPGREHFNFYFDQAGSGVQGFDNVSVAIIPDADHNLTPEHSRKIYI 602 >ref|YP_004279810.1| hypothetical protein AGROH133_08718 [Agrobacterium sp. H13-3] gb|ADY65490.1| hypothetical protein AGROH133_08718 [Agrobacterium sp. H13-3] Length = 605 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 105/356 (29%), Positives = 165/356 (46%), Gaps = 32/356 (8%) Query: 19 AEFKDYHLLMCDPTANRIPADVVGCWADWLSDRAVAGVAQG-VDSLTGRELLEGSHYTEE 77 AEF+ Y L+ PT ++IP DVV DW+ + A A G + G + E+ Sbjct: 252 AEFEGYDDLVSSPTLSKIPGDVVKRLRDWVLSQTHATDAAGPQEDFIVNAPQCGRGFLEQ 311 Query: 78 PVVIRQAPLICGVLTRPRDGHAAADPVIFLNSGGVPHVGWARGTVEAARELAAAGVASLR 137 PV +A + GV P D A V+ L + H GW R +V+ AR LA G+ASLR Sbjct: 312 PVQFGEAGRLFGVFCEP-DDRPAVSSVLLLGAAYDRHAGWGRLSVQTARLLAREGIASLR 370 Query: 138 IDLPGLGLSDDA-GSNRLFLYDSSTRFDVSAAIDWMQRAGFAKVELVGTCSGAFQAFHTA 196 D + S + LYD++ DV+AA+D++ R G V G CSGA+ AF+ A Sbjct: 371 FDAANIADSPPVKNAPDQVLYDAAQNDDVAAALDFLSRRGKGPVVAAGRCSGAYLAFNGA 430 Query: 197 RADRRVRALTMINPLCFAWNSSYALELTAWK------AYETSKANRGSQQQIGPAD---- 246 AD R+ + +NP+ F W +++ K Y + +++ D Sbjct: 431 LADDRISGVVAVNPVVFHWRKGRSVDEALHKPPRSFGEYSQRFRQGATFKRLVSGDVDVV 490 Query: 247 --GPAMTTRSAWKLSVSDSARRLVRRGLEAVKSTLSAMHPSALLGRNRVERWMRELCSRG 304 G + + KLS+ + RL RRG E ++ A +L +R Sbjct: 491 SAGRNIAKATLKKLSIKTA--RLSRRGSEEGRAVYGAFD---------------KLKTRD 533 Query: 305 VRVLMVTSDGDLSLQEIARHFGQDGKRLTSIPGVTRLTLPNADHSLTPRHARRAVV 360 V + ++ SD D L+ +F DG+ L++ V+ +P+ADH+L+ AR+A + Sbjct: 534 VSISLLYSDNDDGLEHFRYYFNADGRGLSAYRNVSLTIIPDADHNLSTPEARKAYI 589 >ref|YP_002283278.1| polysaccharide biosynthesis protein [Rhizobium leguminosarum bv. trifolii WSM2304] gb|ACI57052.1| polysaccharide biosynthesis protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 1103 Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 103/351 (29%), Positives = 163/351 (46%), Gaps = 15/351 (4%) Query: 21 FKDYHLLMCDPTANRIPADVVGCWADWLSDRAVAGVAQGVDSLTGRELLEGSHYTEEPVV 80 F+ Y L +P + PA+VV WL A ++ L G + E PV Sbjct: 756 FEGYDELATNPLFAKTPAEVVELLKTWLERVTTETSAAHSPAVIDNLPLAGEGFVETPVR 815 Query: 81 IRQAPLICGVLTRPRDGHAAADPVIFLNSGGVPHVGWARGTVEAARELAAAGVASLRIDL 140 + GV++RP G + V+FL++ H GW R TV+ ARELA GV SLR D Sbjct: 816 FGSHDHLVGVVSRPL-GEIKGNAVLFLSTAYDRHAGWGRTTVDMARELARQGVVSLRFDS 874 Query: 141 PGLGLSD---DAGSNRLFLYDSSTRFDVSAAIDWMQRAGFAKVELVGTCSGAFQAFHTAR 197 +G S DA LY S+ D AA+D ++ V + G CSG + AF Sbjct: 875 ANVGDSPPRPDAPEQ--VLYSSTQTEDAVAALDLLESVVAGPVMVAGRCSGGYVAFRAGV 932 Query: 198 ADRRVRALTMINPLCFAWNSSYALELTAWKAYETSKANRGSQQQIGPADGPAMTTRSAWK 257 AD R++A+ INP + W+ + + S + G Q++ D + + + Sbjct: 933 ADERLKAVVSINPFVYYWDPEVPVRREHVVSVPRSLDDYG--QRLARVD--TLKRLLSGQ 988 Query: 258 LSVSDSARRLVRRGLEAVKSTLSAMHPSALLGRNRVERWMR----ELCSRGVRVLMVTSD 313 + V + + +V G + ++ + L R + R +R + R V + ++ S+ Sbjct: 989 VDVVSALQNIVIAGGRRLSPFIAPLL-ELLTDRRHIAREVRHSFAQFGKRKVPLTLIYSE 1047 Query: 314 GDLSLQEIARHFGQDGKRLTSIPGVTRLTLPNADHSLTPRHARRAVVARLI 364 GD+ L + HFG G +L+ P V L LP+ADH+LTP +R+ V+ +I Sbjct: 1048 GDVGLDHVYFHFGPRGAKLSRYPNVRLLMLPDADHNLTPPQSRKFVLDEII 1098