BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0191.0004.p (348 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_774869.1| hypothetical protein bll8229 [Bradyrhizobium ja... 722 0.0 ref|YP_004552009.1| D-alanine--D-alanine ligase [Sinorhizobium m... 504 e-141 ref|YP_004144867.1| D-alanine--D-alanine ligase [Mesorhizobium c... 489 e-136 ref|NP_444059.1| D-alanine--D-alanine ligase [Sinorhizobium fred... 472 e-131 emb|CBH37126.1| conserved hypothetical protein [uncultured archa... 320 2e-85 >ref|NP_774869.1| hypothetical protein bll8229 [Bradyrhizobium japonicum USDA 110] dbj|BAC53494.1| bll8229 [Bradyrhizobium japonicum USDA 110] Length = 348 Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/348 (100%), Positives = 348/348 (100%) Query: 1 MRVAVVWNDDHRGVINHFGQPCPEKYGRKTVESVVAALQEGNHDTLLCEGDKGLLATLER 60 MRVAVVWNDDHRGVINHFGQPCPEKYGRKTVESVVAALQEGNHDTLLCEGDKGLLATLER Sbjct: 1 MRVAVVWNDDHRGVINHFGQPCPEKYGRKTVESVVAALQEGNHDTLLCEGDKGLLATLER 60 Query: 61 FMPPDSQARPSGIVFNMAYGIQGECRYTHVPAMLEMAGVPYTGSSPLGHALALDKAITKQ 120 FMPPDSQARPSGIVFNMAYGIQGECRYTHVPAMLEMAGVPYTGSSPLGHALALDKAITKQ Sbjct: 61 FMPPDSQARPSGIVFNMAYGIQGECRYTHVPAMLEMAGVPYTGSSPLGHALALDKAITKQ 120 Query: 121 LIRDCGVPTPNFRVMRRGTESTGDLCFPLVVKPRHESTSFGLQLVYEPAQLRQAVEVIVT 180 LIRDCGVPTPNFRVMRRGTESTGDLCFPLVVKPRHESTSFGLQLVYEPAQLRQAVEVIVT Sbjct: 121 LIRDCGVPTPNFRVMRRGTESTGDLCFPLVVKPRHESTSFGLQLVYEPAQLRQAVEVIVT 180 Query: 181 QYAQDALVEEYIEGREICVALLGNGELEALPLVEQDFGERETRLITWEDKMHMAVVEPQK 240 QYAQDALVEEYIEGREICVALLGNGELEALPLVEQDFGERETRLITWEDKMHMAVVEPQK Sbjct: 181 QYAQDALVEEYIEGREICVALLGNGELEALPLVEQDFGERETRLITWEDKMHMAVVEPQK 240 Query: 241 ICPAQVGSNLATILRDISVATFRACRCRDYARVDIRIDRSGHPFVLEINSMAALGIGASY 300 ICPAQVGSNLATILRDISVATFRACRCRDYARVDIRIDRSGHPFVLEINSMAALGIGASY Sbjct: 241 ICPAQVGSNLATILRDISVATFRACRCRDYARVDIRIDRSGHPFVLEINSMAALGIGASY 300 Query: 301 VLAAKAAGYTFSSLVNGILDVAHARYFGTGISQAEQPSNRERIYYAAG 348 VLAAKAAGYTFSSLVNGILDVAHARYFGTGISQAEQPSNRERIYYAAG Sbjct: 301 VLAAKAAGYTFSSLVNGILDVAHARYFGTGISQAEQPSNRERIYYAAG 348 >ref|YP_004552009.1| D-alanine--D-alanine ligase [Sinorhizobium meliloti AK83] gb|AEG57886.1| D-alanine--D-alanine ligase [Sinorhizobium meliloti AK83] Length = 332 Score = 504 bits (1298), Expect = e-141, Method: Compositional matrix adjust. Identities = 247/332 (74%), Positives = 275/332 (82%), Gaps = 2/332 (0%) Query: 1 MRVAVVWNDDHRGVINHFGQPCPEKYG-RKTVESVVAALQEGNHDTLLCEGDKGLLATLE 59 MRVAVVWN+D+ GVIN FGQPCPE+Y T E VVAALQEG H+TLLCEGDKGLL TLE Sbjct: 1 MRVAVVWNNDYTGVINKFGQPCPEEYRIGGTFEGVVAALQEGGHETLLCEGDKGLLTTLE 60 Query: 60 RFMPPDSQARPSGIVFNMAYGIQGECRYTHVPAMLEMAGVPYTGSSPLGHALALDKAITK 119 RFMP + Q RPSGIVFN+A GIQGECR THVPAMLEMAGVPYT S PLGHAL LDK ITK Sbjct: 61 RFMPTNPQGRPSGIVFNLAEGIQGECRCTHVPAMLEMAGVPYTASGPLGHALTLDKVITK 120 Query: 120 QLIRDCGVPTPNFRVMRRGTESTGDLCFPLVVKPRHESTSFGLQLVYEPAQLRQAVEVIV 179 +L+RDCGVPTPNFRVMRRGTES GDL FPLVVKPR E S GLQLV+EPAQLRQAVE IV Sbjct: 121 RLLRDCGVPTPNFRVMRRGTESIGDLRFPLVVKPRLEDCSLGLQLVHEPAQLRQAVEAIV 180 Query: 180 TQYAQDALVEEYIEGREICVALLGNGELEALPLVEQDFGERETRLITWEDKMHMAVVEPQ 239 TQY QDALVEEYI+GREI VALLGN EL+ PLVE DFG+RETRL+T E K ++A P Sbjct: 181 TQYKQDALVEEYIDGREIAVALLGNEELDVFPLVEHDFGDRETRLMTREAK-YVANAMPP 239 Query: 240 KICPAQVGSNLATILRDISVATFRACRCRDYARVDIRIDRSGHPFVLEINSMAALGIGAS 299 +ICPAQ+GS + +LRDISVA FRAC+CRDYARVD+R+DR G PFVLEIN + L + +S Sbjct: 240 QICPAQIGSGIEAVLRDISVAAFRACQCRDYARVDLRVDRFGQPFVLEINPLPGLSMSSS 299 Query: 300 YVLAAKAAGYTFSSLVNGILDVAHARYFGTGI 331 YVLA AGY+ +SLVN ILDVAH RYFG G+ Sbjct: 300 YVLAGMTAGYSLTSLVNRILDVAHKRYFGVGV 331 >ref|YP_004144867.1| D-alanine--D-alanine ligase [Mesorhizobium ciceri biovar biserrulae WSM1271] ref|YP_004614798.1| D-alanine--D-alanine ligase [Mesorhizobium opportunistum WSM2075] gb|ADV14817.1| D-alanine--D-alanine ligase [Mesorhizobium ciceri biovar biserrulae WSM1271] gb|AEH90704.1| D-alanine--D-alanine ligase [Mesorhizobium opportunistum WSM2075] Length = 340 Score = 489 bits (1258), Expect = e-136, Method: Compositional matrix adjust. Identities = 250/342 (73%), Positives = 276/342 (80%), Gaps = 7/342 (2%) Query: 1 MRVAVVWNDDHRGVINHFGQPCPEKYGRKTVESVVAALQEGNHDTLLCEGDKGLLATLER 60 MRVAVV N DH GVIN FGQP PE R+ VESVVAALQEG H+TL+C+GDKGLLATLER Sbjct: 1 MRVAVVSNHDHTGVINRFGQPIPEFGDREEVESVVAALQEGGHETLICDGDKGLLATLER 60 Query: 61 FMPPDSQARPSGIVFNMAYGIQGECRYTHVPAMLEMAGVPYTGSSPLGHALALDKAITKQ 120 FMPPD Q+RPSGIVFN+A+G QGE VPAMLEMAGVP TG PLG+ LA DK I K+ Sbjct: 61 FMPPDRQSRPSGIVFNLAWGSQGERPEAGVPAMLEMAGVPCTGPGPLGYGLAFDKVIIKR 120 Query: 121 LIRDCGVPTPNFRVMRRGTESTGDLCFPLVVKPRHESTSFGLQLVYEPAQLRQAVEVIVT 180 LIRD GVPTPNFRVMR GTE+TGDL FPLVVKPR+E SFGLQL +EPAQLRQAVEVIVT Sbjct: 121 LIRDRGVPTPNFRVMRLGTETTGDLRFPLVVKPRYECASFGLQLAHEPAQLRQAVEVIVT 180 Query: 181 QYAQDALVEEYIEGREICVALLGNGELEALPLVEQDFGERETRLITWEDKMHMAVVEPQK 240 YAQDALVEEYI+GREI VALLGN ELE LPLVE DF +RE R +T E K ++ Sbjct: 181 LYAQDALVEEYIDGREITVALLGNRELEVLPLVEYDFRDREKRCLTREAKQ-------RR 233 Query: 241 ICPAQVGSNLATILRDISVATFRACRCRDYARVDIRIDRSGHPFVLEINSMAALGIGASY 300 ICP Q+GS LAT+L+DISVATF C+CRDYARVD+RIDRSG FVLEIN+M +L + ASY Sbjct: 234 ICPGQIGSRLATVLQDISVATFLECQCRDYARVDLRIDRSGQAFVLEINNMPSLRMRASY 293 Query: 301 VLAAKAAGYTFSSLVNGILDVAHARYFGTGISQAEQPSNRER 342 VLAA+ AGYTFSSLVN ILDVAH RYFG GI AE SNR R Sbjct: 294 VLAARTAGYTFSSLVNRILDVAHMRYFGIGIPNAEHASNRGR 335 >ref|NP_444059.1| D-alanine--D-alanine ligase [Sinorhizobium fredii NGR234] sp|P55650.1|Y4SG_RHISN RecName: Full=Uncharacterized protein y4sG gb|AAB91846.1| conserved putative 40.0 kDa D-alanine--D-alanine ligase [Sinorhizobium fredii NGR234] Length = 336 Score = 472 bits (1215), Expect = e-131, Method: Compositional matrix adjust. Identities = 237/335 (70%), Positives = 274/335 (81%), Gaps = 5/335 (1%) Query: 1 MRVAVVWNDDHRGVINHFGQPCPEKYGR----KTVESVVAALQEGNHDTLLCEGDKGLLA 56 MR+AVV N GVIN FGQP P+ + +SVVAALQE H+TLLCEGDKGLL Sbjct: 1 MRIAVVCNSAFTGVINRFGQPYPQPPQPWPQGRIADSVVAALQECGHETLLCEGDKGLLT 60 Query: 57 TLERFMPPDSQARPSGIVFNMAYGIQGECRYTHVPAMLEMAGVPYTGSSPLGHALALDKA 116 TLERFMPPD AR SG+VFN+A GIQGE R+THVPAMLEMAGVPYTGSSPLGH L DK Sbjct: 61 TLERFMPPDPLARTSGMVFNLAEGIQGEYRFTHVPAMLEMAGVPYTGSSPLGHGLTDDKV 120 Query: 117 ITKQLIRDCGVPTPNFRVMRRGTESTGDLCFPLVVKPRHESTSFGLQLVYEPAQLRQAVE 176 I+K L+RD GVPTPNF +MRRGTEST DL FP+VVKPRHE SFGLQLV+EPAQL+QAV+ Sbjct: 121 ISKTLMRDSGVPTPNFSIMRRGTESTDDLRFPVVVKPRHEDNSFGLQLVHEPAQLQQAVK 180 Query: 177 VIVTQYAQDALVEEYIEGREICVALLGNGELEALPLVEQDFGERETRLITWEDKMHMAVV 236 +IVT+YAQDALVEEYI+GREI VALLGN E+E LP+VE + GE E L+TWE K ++A V Sbjct: 181 MIVTKYAQDALVEEYIDGREIHVALLGNQEVEVLPMVEFELGEHEAPLLTWEAK-YLAAV 239 Query: 237 EPQKICPAQVGSNLATILRDISVATFRACRCRDYARVDIRIDRSGHPFVLEINSMAALGI 296 +P K CPA++ S LAT+LRDISVATFRAC+CRDYARVD+R+DRSG PFVLEINSM L Sbjct: 240 QPPKTCPAKIESKLATLLRDISVATFRACQCRDYARVDLRLDRSGQPFVLEINSMPGLST 299 Query: 297 GASYVLAAKAAGYTFSSLVNGILDVAHARYFGTGI 331 ++YVLAA AG+++SSL+NGILDVAH RYFG GI Sbjct: 300 HSAYVLAAMTAGHSYSSLINGILDVAHRRYFGNGI 334 >emb|CBH37126.1| conserved hypothetical protein [uncultured archaeon] Length = 720 Score = 320 bits (821), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 159/332 (47%), Positives = 219/332 (65%), Gaps = 5/332 (1%) Query: 1 MRVAVVWNDDHRGVINHFGQPCPEKYGRKTVESVVAALQEGNHDTLLCEGDKGLLATLER 60 M+VA+++N D GVIN FG E Y KTV+ V +L++ H+ + EG+ ++ L+ Sbjct: 1 MKVAIIYNKDSVGVINQFGMQNKEVYNPKTVKLVAESLEKEGHNVRIAEGNMYIIEKLQE 60 Query: 61 FMPPDSQARPSGIVFNMAYGIQGECRYTHVPAMLEMAGVPYTGSSPLGHALALDKAITKQ 120 FMP + G+VFNMAYGIQGE RYTH+PAMLEM G+PY GS P GH+LALDK ITK Sbjct: 61 FMPRVIEGERMGMVFNMAYGIQGESRYTHLPAMLEMLGIPYVGSGPEGHSLALDKVITKI 120 Query: 121 LIRDCGVPTPNFRVMRRGTESTGDLCFPLVVKPRHESTSFGLQLVYEPAQLRQAVEVIVT 180 L++ + TPNF V G E D+ +P++VKP+ E+ S+G+++V LR AV+ +VT Sbjct: 121 LMQKQSISTPNFWVYSSGDEDMSDVQYPVIVKPKMEAVSYGIKIVDNEDDLRAAVKFVVT 180 Query: 181 QYAQDALVEEYIEGREICVALLGNGELEALPLVEQDFGERETRLITWEDKMHMAVVEPQ- 239 ++ Q ALVE++I GRE CV LLGNG+ EA P++E D + T +DK +P+ Sbjct: 181 EFIQQALVEQFIRGREFCVGLLGNGDPEAFPVLEIDLENDPDAIQTVDDKKQ----KPRG 236 Query: 240 KICPAQVGSNLATILRDISVATFRACRCRDYARVDIRIDRSGHPFVLEINSMAALGIGAS 299 KICPA++ LA + +S FRA RD+ARVDIR+D + + ++LEINSMA+LG+ S Sbjct: 237 KICPAKISQKLAAEMVRLSKDAFRALELRDFARVDIRMDEAENIYLLEINSMASLGLTGS 296 Query: 300 YVLAAKAAGYTFSSLVNGILDVAHARYFGTGI 331 YV AA AGY ++ LVN IL+VA RYF I Sbjct: 297 YVYAANVAGYDYARLVNKILEVAAVRYFSEKI 328