BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0190.0038.p         (193 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_774921.1| conjugal transfer protein TrbF [Bradyrhizobium ...   385   e-105
ref|ZP_08868549.1| Conjugal transfer protein trbF [Azospirillum ...   350   8e-95
ref|YP_002277178.1| conjugal transfer protein TrbF [Gluconacetob...   345   2e-93
ref|ZP_06890277.1| Conjugal transfer protein [Methylosinus trich...   338   2e-91
ref|ZP_07026204.1| Conjugal transfer protein [Afipia sp. 1NLS2] ...   326   1e-87

>ref|NP_774921.1| conjugal transfer protein TrbF [Bradyrhizobium japonicum USDA 110]
 dbj|BAC53546.1| trbF [Bradyrhizobium japonicum USDA 110]
          Length = 229

 Score =  385 bits (989), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/193 (96%), Positives = 190/193 (98%)

Query: 1   VQARNWRLMAFGSLILSCGLAGGLVWQSTHGTVVPWVVQVDKLGEAQAVAPAVADYRPND 60
           VQARNWRLMAFGSL+LSCGLAGGLVWQSTHGTVVPWVVQVDKLGEAQ +APA ADYRPND
Sbjct: 37  VQARNWRLMAFGSLMLSCGLAGGLVWQSTHGTVVPWVVQVDKLGEAQVMAPATADYRPND 96

Query: 61  PQIAWYLAHFIQIVRSLPADPIIVRHNWLQAYDFTTTAGSVALNDYARANDPFANLGKQQ 120
           PQIAWYLAHFIQIVRSLPADPIIVRHNWLQAYDFTTTAG+ ALNDYARANDPFANLGKQQ
Sbjct: 97  PQIAWYLAHFIQIVRSLPADPIIVRHNWLQAYDFTTTAGAAALNDYARANDPFANLGKQQ 156

Query: 121 VAIDVSSVIRASPDSFRVAWVEHRFQDGALAGTTRWTAILTIAIQPPTDADRLRKNPLGI 180
           VAIDVSSVIRASPDSFRVAWVEHRFQDGALAGTTRWTAILTIAIQPPTDADRLRKNPLGI
Sbjct: 157 VAIDVSSVIRASPDSFRVAWVEHRFQDGALAGTTRWTAILTIAIQPPTDADRLRKNPLGI 216

Query: 181 YVNAINWSKELGQ 193
           YVNAINWSKELGQ
Sbjct: 217 YVNAINWSKELGQ 229


>ref|ZP_08868549.1| Conjugal transfer protein trbF [Azospirillum amazonense Y2]
 gb|EGY01849.1| Conjugal transfer protein trbF [Azospirillum amazonense Y2]
          Length = 229

 Score =  350 bits (897), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 168/193 (87%), Positives = 180/193 (93%)

Query: 1   VQARNWRLMAFGSLILSCGLAGGLVWQSTHGTVVPWVVQVDKLGEAQAVAPAVADYRPND 60
           VQA+NWRLMAFGSL LS GLAGGLVWQSTHG++VPWVVQVDKLG+AQAVAPA ADY P+D
Sbjct: 37  VQAKNWRLMAFGSLALSMGLAGGLVWQSTHGSIVPWVVQVDKLGQAQAVAPATADYAPSD 96

Query: 61  PQIAWYLAHFIQIVRSLPADPIIVRHNWLQAYDFTTTAGSVALNDYARANDPFANLGKQQ 120
           P+IAWYLAHFIQIVRSLPADPIIVR NWLQAYDFTTT+GS ALNDYARANDPFA LGKQQ
Sbjct: 97  PEIAWYLAHFIQIVRSLPADPIIVRQNWLQAYDFTTTSGSQALNDYARANDPFAKLGKQQ 156

Query: 121 VAIDVSSVIRASPDSFRVAWVEHRFQDGALAGTTRWTAILTIAIQPPTDADRLRKNPLGI 180
           +AIDVSSVIRASP SFRV WVEHR++DGALA T+RWTAILT+AIQPPT AD LRKNPLGI
Sbjct: 157 IAIDVSSVIRASPSSFRVEWVEHRYEDGALAETSRWTAILTVAIQPPTTADALRKNPLGI 216

Query: 181 YVNAINWSKELGQ 193
           YV AINWSKELGQ
Sbjct: 217 YVTAINWSKELGQ 229


>ref|YP_002277178.1| conjugal transfer protein TrbF [Gluconacetobacter diazotrophicus
           PAl 5]
 gb|ACI52563.1| Conjugal transfer protein [Gluconacetobacter diazotrophicus PAl 5]
          Length = 229

 Score =  345 bits (885), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 167/193 (86%), Positives = 179/193 (92%)

Query: 1   VQARNWRLMAFGSLILSCGLAGGLVWQSTHGTVVPWVVQVDKLGEAQAVAPAVADYRPND 60
           VQA+NWRLMAFGSL LS GLAGGLVWQST+G++VPWVVQVDKLG+AQAVAPA ADY P+D
Sbjct: 37  VQAKNWRLMAFGSLALSLGLAGGLVWQSTNGSIVPWVVQVDKLGQAQAVAPATADYAPSD 96

Query: 61  PQIAWYLAHFIQIVRSLPADPIIVRHNWLQAYDFTTTAGSVALNDYARANDPFANLGKQQ 120
           P+IAWYLAHFIQIVRSLPADPIIVR NWLQAYDFTTT+GS ALNDYARANDPFA LG QQ
Sbjct: 97  PEIAWYLAHFIQIVRSLPADPIIVRQNWLQAYDFTTTSGSQALNDYARANDPFAKLGHQQ 156

Query: 121 VAIDVSSVIRASPDSFRVAWVEHRFQDGALAGTTRWTAILTIAIQPPTDADRLRKNPLGI 180
           +AIDVSSVIRASP SFRV WVEHR+QDGALA T+RWTAILT+AIQPPT AD LRKNPLGI
Sbjct: 157 IAIDVSSVIRASPSSFRVEWVEHRYQDGALADTSRWTAILTVAIQPPTTADALRKNPLGI 216

Query: 181 YVNAINWSKELGQ 193
           YV AINWSKELGQ
Sbjct: 217 YVTAINWSKELGQ 229


>ref|ZP_06890277.1| Conjugal transfer protein [Methylosinus trichosporium OB3b]
 gb|EFH01228.1| Conjugal transfer protein [Methylosinus trichosporium OB3b]
          Length = 227

 Score =  338 bits (868), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 159/193 (82%), Positives = 178/193 (92%)

Query: 1   VQARNWRLMAFGSLILSCGLAGGLVWQSTHGTVVPWVVQVDKLGEAQAVAPAVADYRPND 60
           VQA+NWRLMAFGSL+LS GLA GLVWQSTHGTVVPWVV++D+LGEA+A+APA ADY P+D
Sbjct: 35  VQAKNWRLMAFGSLLLSSGLAAGLVWQSTHGTVVPWVVEIDRLGEARAIAPATADYTPSD 94

Query: 61  PQIAWYLAHFIQIVRSLPADPIIVRHNWLQAYDFTTTAGSVALNDYARANDPFANLGKQQ 120
           PQIAWYLA FI+ VR+ PADP++VR +WLQAYDFTTTAG+ ALNDYARANDPFA LGKQQ
Sbjct: 95  PQIAWYLARFIKDVRAAPADPVVVRQSWLQAYDFTTTAGAAALNDYARANDPFAKLGKQQ 154

Query: 121 VAIDVSSVIRASPDSFRVAWVEHRFQDGALAGTTRWTAILTIAIQPPTDADRLRKNPLGI 180
           +A+DVSSVIRAS DSFRVAW+E R+QDG LA TTRWTAILTI IQPPTDADRLRKNPLG+
Sbjct: 155 IAVDVSSVIRASTDSFRVAWIERRYQDGTLADTTRWTAILTIIIQPPTDADRLRKNPLGV 214

Query: 181 YVNAINWSKELGQ 193
           YVNAINWSKELGQ
Sbjct: 215 YVNAINWSKELGQ 227


>ref|ZP_07026204.1| Conjugal transfer protein [Afipia sp. 1NLS2]
 gb|EFI53346.1| Conjugal transfer protein [Afipia sp. 1NLS2]
          Length = 229

 Score =  326 bits (835), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 166/193 (86%), Positives = 177/193 (91%)

Query: 1   VQARNWRLMAFGSLILSCGLAGGLVWQSTHGTVVPWVVQVDKLGEAQAVAPAVADYRPND 60
           VQA+NWRLMAFGSL LS GLAGGLVWQSTHG++VPWVVQVDKLG+AQAVAPA ADY P+D
Sbjct: 37  VQAKNWRLMAFGSLALSMGLAGGLVWQSTHGSIVPWVVQVDKLGQAQAVAPAAADYTPSD 96

Query: 61  PQIAWYLAHFIQIVRSLPADPIIVRHNWLQAYDFTTTAGSVALNDYARANDPFANLGKQQ 120
           PQIAWYLAHF+Q+VR+LPADPIIVR NWLQAYDFTTT+GS ALNDYARANDPFA LGKQQ
Sbjct: 97  PQIAWYLAHFVQMVRALPADPIIVRQNWLQAYDFTTTSGSQALNDYARANDPFAKLGKQQ 156

Query: 121 VAIDVSSVIRASPDSFRVAWVEHRFQDGALAGTTRWTAILTIAIQPPTDADRLRKNPLGI 180
           +AIDVSSVIRASP SFRV WVEHR+QDGALA  TRWTAILTIAIQ P  AD LRKNPLGI
Sbjct: 157 IAIDVSSVIRASPSSFRVEWVEHRYQDGALADNTRWTAILTIAIQTPASADVLRKNPLGI 216

Query: 181 YVNAINWSKELGQ 193
           YV AINWSKELGQ
Sbjct: 217 YVTAINWSKELGQ 229