BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0190.0033.p         (146 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_774913.1| transcriptional regulator [Bradyrhizobium japon...   227   5e-58
ref|ZP_07026200.1| transcriptional regulator, LysR family [Afipi...   204   3e-51
ref|ZP_06888541.1| transcriptional regulator, LysR family [Methy...   143   7e-33
ref|ZP_06890281.1| transcriptional regulator, LysR family [Methy...   140   9e-32
ref|YP_001237635.1| LysR family transcriptional regulator [Brady...   133   8e-30

>ref|NP_774913.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 dbj|BAC53538.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 373

 Score =  227 bits (578), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 110/146 (75%), Positives = 119/146 (81%)

Query: 1   LSLWSERVVVALPKGHPLARRDVVHWGELREEALLLSQHGPAPELLKLLVSKLGGSDPCW 60
           L LWSERVV ALP  HPL  RDV+HWGELR E+LL+SQ GP PE LKLL SKLG SDPC 
Sbjct: 228 LLLWSERVVAALPANHPLTGRDVIHWGELRHESLLMSQRGPGPEFLKLLDSKLGSSDPCP 287

Query: 61  LLHHDVALDRLLTLVGAGWGVLLTLEGATGAAYQGVTFREVHDAEGPTRLSFRAYWRQDN 120
           L+ HDV LDRLL+LVG  WG+LL LE ATGA Y GVTFREVHDAEGPTRLS RAYWRQDN
Sbjct: 288 LVRHDVVLDRLLSLVGVDWGILLVLESATGAVYPGVTFREVHDAEGPTRLSLRAYWRQDN 347

Query: 121 CNPSLRPFLALLRERYPDLSADPETT 146
            NPSLRP L LLRERYPD+SA P+ +
Sbjct: 348 ANPSLRPLLDLLRERYPDISAAPDAS 373


>ref|ZP_07026200.1| transcriptional regulator, LysR family [Afipia sp. 1NLS2]
 gb|EFI53342.1| transcriptional regulator, LysR family [Afipia sp. 1NLS2]
          Length = 305

 Score =  204 bits (520), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 95/144 (65%), Positives = 118/144 (81%)

Query: 1   LSLWSERVVVALPKGHPLARRDVVHWGELREEALLLSQHGPAPELLKLLVSKLGGSDPCW 60
           L +WSERVVVALP+ HPL+RR+ +HW +L+ E LL+   GP PE +KLL +KLG  D   
Sbjct: 160 LPVWSERVVVALPEDHPLSRRETIHWADLKAEVLLVPLRGPGPEFIKLLANKLGCQDAGR 219

Query: 61  LLHHDVALDRLLTLVGAGWGVLLTLEGATGAAYQGVTFREVHDAEGPTRLSFRAYWRQDN 120
           L HH+VALDRLLT+VGAGWG+L+ LEGATGA Y GVTFREVH+++GPTRL+F AYWR+ N
Sbjct: 220 LNHHEVALDRLLTMVGAGWGILVALEGATGATYPGVTFREVHESDGPTRLNFWAYWRKTN 279

Query: 121 CNPSLRPFLALLRERYPDLSADPE 144
            NPSLRPFL ++RERYPDLS+D +
Sbjct: 280 SNPSLRPFLDMVRERYPDLSSDSD 303


>ref|ZP_06888541.1| transcriptional regulator, LysR family [Methylosinus trichosporium
           OB3b]
 gb|EFH03038.1| transcriptional regulator, LysR family [Methylosinus trichosporium
           OB3b]
          Length = 258

 Score =  143 bits (361), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 76/141 (53%), Positives = 93/141 (65%)

Query: 1   LSLWSERVVVALPKGHPLARRDVVHWGELREEALLLSQHGPAPELLKLLVSKLGGSDPCW 60
           L LW ERVVVA+P+ HPL  R  + W EL +  +LL++ G   EL +LL  K GGS    
Sbjct: 114 LPLWGERVVVAVPENHPLNNRPAIQWRELCDNRILLTRSGVDSELEQLLSVKAGGSGSLR 173

Query: 61  LLHHDVALDRLLTLVGAGWGVLLTLEGATGAAYQGVTFREVHDAEGPTRLSFRAYWRQDN 120
           + + DV+LDRLL+LVGAG+GV   LEGA G    GV  RE+H   G  RL F AYW++ N
Sbjct: 174 ISYQDVSLDRLLSLVGAGYGVAPLLEGAAGFGCPGVAHRELHGDCGQMRLQFAAYWKETN 233

Query: 121 CNPSLRPFLALLRERYPDLSA 141
            NP L+PFL LLR RYPDLSA
Sbjct: 234 SNPMLQPFLDLLRARYPDLSA 254


>ref|ZP_06890281.1| transcriptional regulator, LysR family [Methylosinus trichosporium
           OB3b]
 gb|EFH01232.1| transcriptional regulator, LysR family [Methylosinus trichosporium
           OB3b]
          Length = 259

 Score =  140 bits (352), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 75/140 (53%), Positives = 93/140 (66%)

Query: 1   LSLWSERVVVALPKGHPLARRDVVHWGELREEALLLSQHGPAPELLKLLVSKLGGSDPCW 60
           L LW ERVVVA+P+ HPL  R  + W EL +  +LL++ G   EL +LL  K GGSD   
Sbjct: 114 LPLWGERVVVAVPEHHPLNNRPAIKWRELCDNRILLTRSGVDSELEQLLSVKAGGSDSLR 173

Query: 61  LLHHDVALDRLLTLVGAGWGVLLTLEGATGAAYQGVTFREVHDAEGPTRLSFRAYWRQDN 120
           + + DV+LDRLL+LVGAG+GV   LEGA G    GV  RE+H   G  RL F AYW++ N
Sbjct: 174 ISYQDVSLDRLLSLVGAGYGVAPLLEGAVGFVCPGVAHRELHGDCGQMRLQFAAYWKETN 233

Query: 121 CNPSLRPFLALLRERYPDLS 140
            +P L+PFL LLR RYPDLS
Sbjct: 234 GSPMLQPFLDLLRARYPDLS 253


>ref|YP_001237635.1| LysR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gb|ABQ33729.1| transcriptional regulator, LysR family [Bradyrhizobium sp. BTAi1]
          Length = 276

 Score =  133 bits (335), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 68/138 (49%), Positives = 92/138 (66%), Gaps = 1/138 (0%)

Query: 1   LSLWSERVVVALPKGHPLARRDVVHWGELREEALLLSQHGPAPELLKLLVSKLGG-SDPC 59
           + LWSER++V LP+ H LA +DVV+W +L+++ +LLSQ+ P  EL  LL +KL   SD  
Sbjct: 134 MRLWSERILVVLPESHALAAQDVVYWTDLQDQTILLSQYDPGRELEGLLTTKLTSTSDRL 193

Query: 60  WLLHHDVALDRLLTLVGAGWGVLLTLEGATGAAYQGVTFREVHDAEGPTRLSFRAYWRQD 119
            +  HDV+   L +LV  G G+ L LE   GA + G+T+REV D  GP+RL F A WR+D
Sbjct: 194 RIERHDVSRGVLKSLVAMGLGLSLVLESDIGANFPGLTYREVRDGTGPSRLEFAAAWRED 253

Query: 120 NCNPSLRPFLALLRERYP 137
           N +P LR F+ LL ERYP
Sbjct: 254 NESPPLRDFIKLLNERYP 271