BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0190.0018.p (271 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001241702.1| putative permease [Bradyrhizobium sp. BTAi1]... 448 e-124 ref|YP_001207257.1| putative permease membrane protein [Bradyrhi... 439 e-121 ref|YP_001990667.1| ABC transporter inner membrane protein [Rhod... 434 e-120 ref|YP_487649.1| binding-protein dependent transport system inne... 432 e-119 ref|NP_946825.1| putative permease [Rhodopseudomonas palustris C... 432 e-119 >ref|YP_001241702.1| putative permease [Bradyrhizobium sp. BTAi1] gb|ABQ37796.1| putative permease protein [Bradyrhizobium sp. BTAi1] Length = 271 Score = 448 bits (1153), Expect = e-124, Method: Compositional matrix adjust. Identities = 230/271 (84%), Positives = 248/271 (91%) Query: 1 MSQKSFVWLCLLPLAVVTTAFFLLPMARLVVAGAEGPHGLAGYLAILTEARYRATLINTV 60 MS KSFVW+CLLPLA VT AFFLLPMARL+V GAEGP GLA YLAIL E RYRATL+NTV Sbjct: 1 MSHKSFVWICLLPLAAVTAAFFLLPMARLLVTGAEGPRGLAEYLAILVEPRYRATLVNTV 60 Query: 61 LLAAATTVVTLIVATIAGMFLQRHRFPGRAVLIAMLTFPLAFPGVVVGFMIILLAGRQGL 120 LLAAATTV TLI+ATIAG+FLQRHRFPGRAVL+A+LTFPLAFPGVV+GFMIILLAGRQGL Sbjct: 61 LLAAATTVATLIIATIAGLFLQRHRFPGRAVLVAILTFPLAFPGVVIGFMIILLAGRQGL 120 Query: 121 IGDLSNRIFDEKFVFAYSIYGLFLGYLYFSIPRVILTIMAAVQKLDVGQEEAARSLGASP 180 IGD+S R+ +K VFAYSIYGLFLGYLYFSIPRVILTIMAA QKLD G EAARSLGA P Sbjct: 121 IGDVSARLTGDKLVFAYSIYGLFLGYLYFSIPRVILTIMAAAQKLDPGLAEAARSLGAGP 180 Query: 181 WAVQRDVVLPALAPAFVASGAIAFATAMGAFGTAFTLATNIDVLPMLIYTEFTLAANFAT 240 +AV RDV+LP LAPA VASGAIAFATAMGAFGTAFTLATNIDVLPMLIYTEFTLA N AT Sbjct: 181 FAVLRDVILPGLAPALVASGAIAFATAMGAFGTAFTLATNIDVLPMLIYTEFTLAGNLAT 240 Query: 241 SAALSVGLGLITWLILALARSFSGSAVAAAG 271 SAALSVGLG++TWLILALARSF+G++VAAAG Sbjct: 241 SAALSVGLGVMTWLILALARSFTGNSVAAAG 271 >ref|YP_001207257.1| putative permease membrane protein [Bradyrhizobium sp. ORS 278] emb|CAL79040.1| putative permease protein; putative membrane protein; putative exported protein [Bradyrhizobium sp. ORS 278] Length = 271 Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust. Identities = 227/271 (83%), Positives = 245/271 (90%) Query: 1 MSQKSFVWLCLLPLAVVTTAFFLLPMARLVVAGAEGPHGLAGYLAILTEARYRATLINTV 60 MS KSFVW CLLPLA VT AFF+LP+ L+V GAEG G A YLAI+ E RYRATL++TV Sbjct: 1 MSHKSFVWACLLPLAAVTAAFFVLPVVHLLVTGAEGLRGPAEYLAIIAEPRYRATLLSTV 60 Query: 61 LLAAATTVVTLIVATIAGMFLQRHRFPGRAVLIAMLTFPLAFPGVVVGFMIILLAGRQGL 120 LLAAATTV TLIVATIAG+FLQRHRFPGRAVL+A+LTFPLAFPGVV+GFMIILLAGRQGL Sbjct: 61 LLAAATTVATLIVATIAGLFLQRHRFPGRAVLVAILTFPLAFPGVVIGFMIILLAGRQGL 120 Query: 121 IGDLSNRIFDEKFVFAYSIYGLFLGYLYFSIPRVILTIMAAVQKLDVGQEEAARSLGASP 180 IGD+S+R+ +K VFAYSIYGLFLGYLYFSIPRVILTIMAA QKLD EEAARSLGASP Sbjct: 121 IGDVSSRLLGDKIVFAYSIYGLFLGYLYFSIPRVILTIMAAAQKLDPSLEEAARSLGASP 180 Query: 181 WAVQRDVVLPALAPAFVASGAIAFATAMGAFGTAFTLATNIDVLPMLIYTEFTLAANFAT 240 WAV RDVVLPALAPA VASGAIAFATAMGAFGTAFTLATNIDVLPMLIYTEFTLA N AT Sbjct: 181 WAVLRDVVLPALAPALVASGAIAFATAMGAFGTAFTLATNIDVLPMLIYTEFTLAGNLAT 240 Query: 241 SAALSVGLGLITWLILALARSFSGSAVAAAG 271 SAALSVGLG +TWLILALARSF+G++VAAAG Sbjct: 241 SAALSVGLGAMTWLILALARSFTGNSVAAAG 271 >ref|YP_001990667.1| ABC transporter inner membrane protein [Rhodopseudomonas palustris TIE-1] gb|ACF00192.1| binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris TIE-1] Length = 271 Score = 434 bits (1117), Expect = e-120, Method: Compositional matrix adjust. Identities = 226/271 (83%), Positives = 242/271 (89%) Query: 1 MSQKSFVWLCLLPLAVVTTAFFLLPMARLVVAGAEGPHGLAGYLAILTEARYRATLINTV 60 M F+ +CL PL V+T AFFLLPMARLVV GAEGP G AGYLAIL E RYRATLINTV Sbjct: 1 MKHHKFLLICLAPLVVLTVAFFLLPMARLVVIGAEGPEGPAGYLAILLEPRYRATLINTV 60 Query: 61 LLAAATTVVTLIVATIAGMFLQRHRFPGRAVLIAMLTFPLAFPGVVVGFMIILLAGRQGL 120 LLAAATT+ TLIVATIAG+FLQRHRFPGRAVLIAMLTFPLAFPGVV+GF+IILLAGRQG+ Sbjct: 61 LLAAATTIATLIVATIAGLFLQRHRFPGRAVLIAMLTFPLAFPGVVIGFLIILLAGRQGV 120 Query: 121 IGDLSNRIFDEKFVFAYSIYGLFLGYLYFSIPRVILTIMAAVQKLDVGQEEAARSLGASP 180 IGDL+ + VFAYSI+GLFLGYLYFSIPRVILTIMAAVQKLD G EEAARSLGASP Sbjct: 121 IGDLTRFATGTRVVFAYSIWGLFLGYLYFSIPRVILTIMAAVQKLDPGLEEAARSLGASP 180 Query: 181 WAVQRDVVLPALAPAFVASGAIAFATAMGAFGTAFTLATNIDVLPMLIYTEFTLAANFAT 240 WAVQRDVVLPAL PAFVASGAIAFATAMGAFGTAFTLATNIDVLPMLIYTEFTLAANFAT Sbjct: 181 WAVQRDVVLPALVPAFVASGAIAFATAMGAFGTAFTLATNIDVLPMLIYTEFTLAANFAT 240 Query: 241 SAALSVGLGLITWLILALARSFSGSAVAAAG 271 +A+LSVGLGLI+W +LALARS +G VAA G Sbjct: 241 AASLSVGLGLISWAMLALARSLTGGTVAATG 271 >ref|YP_487649.1| binding-protein dependent transport system inner membrane protein [Rhodopseudomonas palustris HaA2] gb|ABD08738.1| Binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris HaA2] Length = 271 Score = 432 bits (1110), Expect = e-119, Method: Compositional matrix adjust. Identities = 223/271 (82%), Positives = 243/271 (89%) Query: 1 MSQKSFVWLCLLPLAVVTTAFFLLPMARLVVAGAEGPHGLAGYLAILTEARYRATLINTV 60 MSQ+SF CL PL V+T AFF+LPMARLVV GA GP G+AGYLAIL E RYRATLINTV Sbjct: 1 MSQRSFSLACLTPLVVLTAAFFVLPMARLVVVGAGGPQGVAGYLAILLEPRYRATLINTV 60 Query: 61 LLAAATTVVTLIVATIAGMFLQRHRFPGRAVLIAMLTFPLAFPGVVVGFMIILLAGRQGL 120 LLA+ATT+ TL++A IA +FLQRHRFPGRAVL+AMLTFPLAFPGVV+GF+IILLAGRQGL Sbjct: 61 LLASATTLATLVIAAIAAIFLQRHRFPGRAVLVAMLTFPLAFPGVVIGFLIILLAGRQGL 120 Query: 121 IGDLSNRIFDEKFVFAYSIYGLFLGYLYFSIPRVILTIMAAVQKLDVGQEEAARSLGASP 180 IGD++ + K VFAYSI+GLFLGYLYFSIPRVILTIMAAVQKLD G EEAARSLGASP Sbjct: 121 IGDVTRLLGGGKVVFAYSIWGLFLGYLYFSIPRVILTIMAAVQKLDPGLEEAARSLGASP 180 Query: 181 WAVQRDVVLPALAPAFVASGAIAFATAMGAFGTAFTLATNIDVLPMLIYTEFTLAANFAT 240 WAVQRDVVLPAL PAFVASGAIAFATAMGAFGTAFTLATNIDVLPMLIYTEFTLAANFAT Sbjct: 181 WAVQRDVVLPALGPAFVASGAIAFATAMGAFGTAFTLATNIDVLPMLIYTEFTLAANFAT 240 Query: 241 SAALSVGLGLITWLILALARSFSGSAVAAAG 271 +A+LSVGLGLI+W +LALARS SG VAA G Sbjct: 241 AASLSVGLGLISWAMLALARSLSGGTVAATG 271 >ref|NP_946825.1| putative permease [Rhodopseudomonas palustris CGA009] emb|CAE26919.1| putative permease protein [Rhodopseudomonas palustris CGA009] Length = 271 Score = 432 bits (1110), Expect = e-119, Method: Compositional matrix adjust. Identities = 224/271 (82%), Positives = 241/271 (88%) Query: 1 MSQKSFVWLCLLPLAVVTTAFFLLPMARLVVAGAEGPHGLAGYLAILTEARYRATLINTV 60 M F+ +CL PL V+T AFFLLPMARLVV GAEGP G AGYLAIL E RYRATLINT+ Sbjct: 1 MKHHKFLLICLAPLVVLTVAFFLLPMARLVVIGAEGPEGPAGYLAILLEPRYRATLINTL 60 Query: 61 LLAAATTVVTLIVATIAGMFLQRHRFPGRAVLIAMLTFPLAFPGVVVGFMIILLAGRQGL 120 LLA ATT+ TLIVATIAG+FLQRHRFPGRAVLIAMLTFPLAFPGVV+GF+IILLAGRQG+ Sbjct: 61 LLATATTIATLIVATIAGLFLQRHRFPGRAVLIAMLTFPLAFPGVVIGFLIILLAGRQGV 120 Query: 121 IGDLSNRIFDEKFVFAYSIYGLFLGYLYFSIPRVILTIMAAVQKLDVGQEEAARSLGASP 180 IGDL+ + VFAYSI+GLFLGYLYFSIPRVILTIMAAVQKLD G EEAARSLGASP Sbjct: 121 IGDLTRFATGTRVVFAYSIWGLFLGYLYFSIPRVILTIMAAVQKLDPGLEEAARSLGASP 180 Query: 181 WAVQRDVVLPALAPAFVASGAIAFATAMGAFGTAFTLATNIDVLPMLIYTEFTLAANFAT 240 WAVQRDVVLPAL PAFVASGAIAFATAMGAFGTAFTLATNIDVLPMLIYTEFTLAANFAT Sbjct: 181 WAVQRDVVLPALVPAFVASGAIAFATAMGAFGTAFTLATNIDVLPMLIYTEFTLAANFAT 240 Query: 241 SAALSVGLGLITWLILALARSFSGSAVAAAG 271 +A+LSVGLGLI+W +LALARS +G VAA G Sbjct: 241 AASLSVGLGLISWAMLALARSLTGGTVAATG 271