BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0190.0011.p (417 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001766598.1| extracellular ligand-binding receptor [Methy... 554 e-155 ref|YP_002497312.1| extracellular ligand-binding receptor [Methy... 514 e-143 ref|YP_001926242.1| extracellular ligand-binding receptor [Methy... 503 e-140 ref|YP_003067437.1| ABC transporter substrate-binding protein [M... 501 e-139 ref|YP_001638760.1| extracellular ligand-binding receptor [Methy... 501 e-139 >ref|YP_001766598.1| extracellular ligand-binding receptor [Methylobacterium radiotolerans JCM 2831] gb|ACB27796.1| Extracellular ligand-binding receptor [Methylobacterium radiotolerans JCM 2831] Length = 411 Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust. Identities = 254/379 (67%), Positives = 314/379 (82%), Gaps = 1/379 (0%) Query: 39 EEAPIKIGFPVPLTGPYGAEAQDQVRAGQLAIAQFNDAGGLNGRKAELVVRDDKLNPGEA 98 ++ PI+IGFPVPLTG +GAEA DQVRA QLA+ +FN++GG GR AEL+VRDDKLNPGEA Sbjct: 34 QDGPIRIGFPVPLTGAFGAEANDQVRAAQLAVKEFNESGGFQGRNAELLVRDDKLNPGEA 93 Query: 99 ATRTLELVEKEKVNFVVGSLSAAVQLAINNVTKERGVIFNSISQSDAINEAADFSKYTFH 158 ATRTLEL+EK+KVN +VG LSAAV L+INNV +ERGVI+NSISQSDAINEA DF + TFH Sbjct: 94 ATRTLELIEKDKVNVLVGGLSAAVTLSINNVARERGVIYNSISQSDAINEAKDFGRTTFH 153 Query: 159 EALNPHMTSGAVGRYAFTKFGKKVAFLTADYAYGHEMVRGFLEVGKQFNIENLGDIRHPL 218 EALNPHMT+GAVGRY F K GK+VAFL+ADYAYGHEM+RGF G+ F IE + DIRHP+ Sbjct: 154 EALNPHMTAGAVGRYVFPKSGKRVAFLSADYAYGHEMMRGFKRAGEVFGIEVVADIRHPI 213 Query: 219 GTTDFSTLLPRLQALKPDILCISNFGRDQQIALKQATDFGIKKSIQIIAPLLSHASRVAA 278 G +D+S LPR+ ALKPD+LC+ NFGRDQ ++++QAT+FG+K+ +++AP+L +R A Sbjct: 214 GASDYSAFLPRIAALKPDVLCLCNFGRDQVVSIQQATEFGLKRKTKLVAPVLLFTARKAG 273 Query: 279 GPQAFEGVVGGCSFFWGIEDKFASTKAFNDAFRKMYDGKLPTDYGALGYGGVRTVLEAVK 338 G AF+GV+GG S++W +ED S KAFND FR Y+G +P+DYGALGY GVR+VLE VK Sbjct: 274 G-DAFDGVIGGTSYYWRLEDSVPSAKAFNDRFRAAYNGAVPSDYGALGYAGVRSVLEGVK 332 Query: 339 GAGSVETDKVVASLEALKYDYYKGQQYYRKCDHQSVQSVLVIKSKSKDMKNESDVFEVLS 398 AGSVETDKVVA++EALK D+YKG Q +RKCDHQSVQSVL++++KSKDMK DVF +L Sbjct: 333 AAGSVETDKVVAAMEALKADFYKGPQSFRKCDHQSVQSVLIVEAKSKDMKTPDDVFTILG 392 Query: 399 TEEPDEKNLRTCDALGHKS 417 TE PDE+ LR CD LGHK+ Sbjct: 393 TEGPDERFLRGCDELGHKA 411 >ref|YP_002497312.1| extracellular ligand-binding receptor [Methylobacterium nodulans ORS 2060] gb|ACL57009.1| Extracellular ligand-binding receptor [Methylobacterium nodulans ORS 2060] Length = 415 Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust. Identities = 242/420 (57%), Positives = 319/420 (75%), Gaps = 8/420 (1%) Query: 1 MTKKVTKAGSISRRRLLT-TASAGAVLAVS-PFRINLLQAEEAPIKIGFPVPLTGPYGAE 58 M ++ T+ GS+SRR L+ A+ GA+ + PF + +A E PI+IGFP P+TGP+GAE Sbjct: 1 MIEQGTRQGSVSRRMLVRGMAATGALAGIGMPF---VARAAE-PIRIGFPTPVTGPFGAE 56 Query: 59 AQDQVRAGQLAIAQFNDAGGLNGRKAELVVRDDKLNPGEAATRTLELVEKEKVNFVVGSL 118 A+DQ+R+ +LA+ QFN+AGG+NGR AEL+VRDDKLNPGEAATRTLEL+EK+KV+F+VG+L Sbjct: 57 AKDQIRSAELAVKQFNEAGGVNGRTAELLVRDDKLNPGEAATRTLELIEKDKVHFIVGAL 116 Query: 119 SAAVQLAINNVTKERGVIFNSISQSDAINEAADFSKYTFHEALNPHMTSGAVGRYAFTKF 178 S+AVQL++N +T+ R V++ SISQSD INEA DFS+YTFHEALNPHMT+ AV ++AF K Sbjct: 117 SSAVQLSVNEITRSRKVLYVSISQSDTINEAKDFSRYTFHEALNPHMTTAAVAKHAFKK- 175 Query: 179 GKKVAFLTADYAYGHEMVRGFLEVGKQFNIENLGDIRHPLGTTDFSTLLPRLQALKPDIL 238 G KVA+L ADYAYGHEM+RGF E +G+I HP G D+ST +PRL++++PDIL Sbjct: 176 GTKVAYLAADYAYGHEMLRGFKRAAAAIGAETVGEILHPFGAPDYSTFMPRLRSMRPDIL 235 Query: 239 CISNFGRDQQIALKQATDFGIKKSIQIIAPLLSHASRVAAGPQAFEGVVGGCSFFWGIED 298 CI NFGRDQ ++KQA+DFG+KK QI+ P+L H R+A G AFEGVVG +++W +E+ Sbjct: 236 CICNFGRDQANSIKQASDFGLKKGAQIVVPVLLHNQRLAGGADAFEGVVGASNYYWRLEE 295 Query: 299 KFASTKAFNDAFRKMYDGKLPTDYGALGYGGVRTVLEAVKGAGSVETDKVVASLEALKYD 358 S KAFNDAFR Y +PTDYGA GY VR++L AVK AG +TDKV+A+LE L YD Sbjct: 296 TVPSAKAFNDAFRAAYADAIPTDYGAYGYTAVRSLLMAVKAAGDTDTDKVIAALEGLTYD 355 Query: 359 YYKGQQYYRKCDHQSVQSVLVIKSKSK-DMKNESDVFEVLSTEEPDEKNLRTCDALGHKS 417 KG + YR CDHQ++QSVL+ SK K +M+ E+D+F +L E E LRTC+ LGH++ Sbjct: 356 VAKGPERYRACDHQAIQSVLITVSKKKSEMQGEADLFRILEVEAGSENALRTCNELGHRA 415 >ref|YP_001926242.1| extracellular ligand-binding receptor [Methylobacterium populi BJ001] gb|ACB81707.1| Extracellular ligand-binding receptor [Methylobacterium populi BJ001] Length = 415 Score = 503 bits (1294), Expect = e-140, Method: Compositional matrix adjust. Identities = 239/420 (56%), Positives = 315/420 (75%), Gaps = 8/420 (1%) Query: 1 MTKKVTKAGSISRRRLLTTASAGAVLAV--SPFRINLLQAEEAPIKIGFPVPLTGPYGAE 58 M ++ G++SRR L+ +A LA PF + +A E PI+IGFP P+TGP+GAE Sbjct: 1 MNRQGPGYGAVSRRTLVRGMAAAGTLAGIGMPF---VARAAE-PIRIGFPTPVTGPFGAE 56 Query: 59 AQDQVRAGQLAIAQFNDAGGLNGRKAELVVRDDKLNPGEAATRTLELVEKEKVNFVVGSL 118 A+DQ+R+ +LA+ QFN+AGGLNGR AEL+VRDDKLNPGEAATRTLEL+EK++ +F+VG+L Sbjct: 57 AKDQIRSAELAVKQFNEAGGLNGRMAELLVRDDKLNPGEAATRTLELIEKDRAHFIVGAL 116 Query: 119 SAAVQLAINNVTKERGVIFNSISQSDAINEAADFSKYTFHEALNPHMTSGAVGRYAFTKF 178 S+AVQL++N +T+ R VI+ SISQSD INEA DFS++TFHEALNPHMT+ AV ++AF K Sbjct: 117 SSAVQLSVNEITRSRKVIYVSISQSDTINEAKDFSRHTFHEALNPHMTTAAVAKHAFKK- 175 Query: 179 GKKVAFLTADYAYGHEMVRGFLEVGKQFNIENLGDIRHPLGTTDFSTLLPRLQALKPDIL 238 G +VA+L ADYAYGHEM+RGF E G+I HP G D+ST +PRL+A++PDIL Sbjct: 176 GTRVAYLVADYAYGHEMLRGFKRAAAAIGAETAGEILHPFGAPDYSTFMPRLRAMRPDIL 235 Query: 239 CISNFGRDQQIALKQATDFGIKKSIQIIAPLLSHASRVAAGPQAFEGVVGGCSFFWGIED 298 CI NFGRDQ ++KQA DFG+KK+ +I+ P+L H R+A G AFEGVVG +++W +E+ Sbjct: 236 CICNFGRDQANSIKQANDFGLKKASRIVVPVLLHNQRLAGGADAFEGVVGASNYYWRLEE 295 Query: 299 KFASTKAFNDAFRKMYDGKLPTDYGALGYGGVRTVLEAVKGAGSVETDKVVASLEALKYD 358 + KAFNDAFR Y G +PTDYGA GY VR++L AVK AG +TDKVV +LE LKYD Sbjct: 296 TVPTAKAFNDAFRAAYAGAVPTDYGAYGYTAVRSLLMAVKAAGDTDTDKVVTALEGLKYD 355 Query: 359 YYKGQQYYRKCDHQSVQSVLVIKSKSK-DMKNESDVFEVLSTEEPDEKNLRTCDALGHKS 417 KG + YR CDHQ++QSVL+ +SK K +M+ E+D+F +L E E LR+CD LGH++ Sbjct: 356 VAKGPESYRACDHQAIQSVLITESKKKSEMQGEADLFRILEVEPGSEAMLRSCDELGHRA 415 >ref|YP_003067437.1| ABC transporter substrate-binding protein [Methylobacterium extorquens DM4] emb|CAX23466.1| ABC transporter, periplasmic protein (tat pathway signal) [Methylobacterium extorquens DM4] Length = 425 Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust. Identities = 236/420 (56%), Positives = 318/420 (75%), Gaps = 8/420 (1%) Query: 1 MTKKVTKAGSISRRRLLTTASAGAVLAV--SPFRINLLQAEEAPIKIGFPVPLTGPYGAE 58 M ++ G++SRR L+ +A LA PF + +A E PI+IGFP P+TGP+GAE Sbjct: 11 MIRQGPGYGAVSRRTLVRGMAAAGTLAGIGMPF---VARAAE-PIRIGFPTPVTGPFGAE 66 Query: 59 AQDQVRAGQLAIAQFNDAGGLNGRKAELVVRDDKLNPGEAATRTLELVEKEKVNFVVGSL 118 A+DQ+R+ +LA+ QFN+AGGLNGR AEL+VRDDKLNPGEAATRTLEL+EK++ +F+VG+L Sbjct: 67 AKDQIRSAELAVKQFNEAGGLNGRMAELLVRDDKLNPGEAATRTLELIEKDRAHFIVGAL 126 Query: 119 SAAVQLAINNVTKERGVIFNSISQSDAINEAADFSKYTFHEALNPHMTSGAVGRYAFTKF 178 S+AVQL++N +T+ R V++ SISQSD INEA DFS++TFHEALNPHMT+ AV ++AF K Sbjct: 127 SSAVQLSVNEITRSRKVLYVSISQSDTINEAKDFSRHTFHEALNPHMTTAAVAKHAFKK- 185 Query: 179 GKKVAFLTADYAYGHEMVRGFLEVGKQFNIENLGDIRHPLGTTDFSTLLPRLQALKPDIL 238 G +VA+L ADYAYGHEM+RGF E G+I HP G D+ST +PRL++++PDIL Sbjct: 186 GTRVAYLVADYAYGHEMLRGFKRAAAAIGAETAGEILHPFGAPDYSTFMPRLRSMRPDIL 245 Query: 239 CISNFGRDQQIALKQATDFGIKKSIQIIAPLLSHASRVAAGPQAFEGVVGGCSFFWGIED 298 CI NFGRDQ ++KQA DFG+KK+ +I+ P+L H R+A G AFEGVVG +++W +E+ Sbjct: 246 CICNFGRDQANSIKQANDFGLKKAARIVVPVLLHNQRLAGGADAFEGVVGASNYYWRLEE 305 Query: 299 KFASTKAFNDAFRKMYDGKLPTDYGALGYGGVRTVLEAVKGAGSVETDKVVASLEALKYD 358 S KAFNDAFR Y G +PTDYGA GY VR++L AV+ AG +TD+V+A+LEAL+YD Sbjct: 306 TVPSAKAFNDAFRAAYAGAVPTDYGAYGYTAVRSLLMAVQAAGDTDTDRVIAALEALQYD 365 Query: 359 YYKGQQYYRKCDHQSVQSVLVIKSKSK-DMKNESDVFEVLSTEEPDEKNLRTCDALGHKS 417 KG + YR CDHQ++QSVL+ +SK K +M+ E+D+F++L E E LR+CD LGH++ Sbjct: 366 VAKGPERYRACDHQAIQSVLITESKKKSEMQGEADLFKILEVEPGAEAMLRSCDELGHRA 425 >ref|YP_001638760.1| extracellular ligand-binding receptor [Methylobacterium extorquens PA1] ref|YP_002420255.1| extracellular ligand-binding receptor [Methylobacterium chloromethanicum CM4] gb|ABY29689.1| Extracellular ligand-binding receptor [Methylobacterium extorquens PA1] gb|ACK82327.1| Extracellular ligand-binding receptor [Methylobacterium chloromethanicum CM4] Length = 415 Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust. Identities = 236/420 (56%), Positives = 318/420 (75%), Gaps = 8/420 (1%) Query: 1 MTKKVTKAGSISRRRLLTTASAGAVLAV--SPFRINLLQAEEAPIKIGFPVPLTGPYGAE 58 M ++ G++SRR L+ +A LA PF + +A E PI+IGFP P+TGP+GAE Sbjct: 1 MIRQGPGYGAVSRRTLVRGMAAAGTLAGIGMPF---VARAAE-PIRIGFPTPVTGPFGAE 56 Query: 59 AQDQVRAGQLAIAQFNDAGGLNGRKAELVVRDDKLNPGEAATRTLELVEKEKVNFVVGSL 118 A+DQ+R+ +LA+ QFN+AGGLNGR AEL+VRDDKLNPGEAATRTLEL+EK++ +F+VG+L Sbjct: 57 AKDQIRSAELAVKQFNEAGGLNGRMAELLVRDDKLNPGEAATRTLELIEKDRAHFIVGAL 116 Query: 119 SAAVQLAINNVTKERGVIFNSISQSDAINEAADFSKYTFHEALNPHMTSGAVGRYAFTKF 178 S+AVQL++N +T+ R V++ SISQSD INEA DFS++TFHEALNPHMT+ AV ++AF K Sbjct: 117 SSAVQLSVNEITRSRKVLYVSISQSDTINEAKDFSRHTFHEALNPHMTTAAVAKHAFKK- 175 Query: 179 GKKVAFLTADYAYGHEMVRGFLEVGKQFNIENLGDIRHPLGTTDFSTLLPRLQALKPDIL 238 G +VA+L ADYAYGHEM+RGF E G+I HP G D+ST +PRL++++PDIL Sbjct: 176 GTRVAYLVADYAYGHEMLRGFKRAAAAIGAETAGEILHPFGAPDYSTFMPRLRSMRPDIL 235 Query: 239 CISNFGRDQQIALKQATDFGIKKSIQIIAPLLSHASRVAAGPQAFEGVVGGCSFFWGIED 298 CI NFGRDQ ++KQA DFG+KK+ +I+ P+L H R+A G AFEGVVG +++W +E+ Sbjct: 236 CICNFGRDQANSIKQANDFGLKKAARIVVPVLLHNQRLAGGADAFEGVVGASNYYWRLEE 295 Query: 299 KFASTKAFNDAFRKMYDGKLPTDYGALGYGGVRTVLEAVKGAGSVETDKVVASLEALKYD 358 S KAFNDAFR Y G +PTDYGA GY VR++L AV+ AG +TD+V+A+LEAL+YD Sbjct: 296 TVPSAKAFNDAFRAAYAGAVPTDYGAYGYTAVRSLLMAVQAAGDTDTDRVIAALEALQYD 355 Query: 359 YYKGQQYYRKCDHQSVQSVLVIKSKSK-DMKNESDVFEVLSTEEPDEKNLRTCDALGHKS 417 KG + YR CDHQ++QSVL+ +SK K +M+ E+D+F++L E E LR+CD LGH++ Sbjct: 356 VAKGPERYRACDHQAIQSVLITESKKKSEMQGEADLFKILEVEPGAEAMLRSCDELGHRA 415