BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0190.0005.p (228 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_770934.1| TetR family transcriptional regulator [Rhizobiu... 240 1e-61 ref|YP_510892.1| TetR family transcriptional regulator [Jannasch... 233 1e-59 ref|YP_003692164.1| TetR family transcriptional regulator [Stark... 207 1e-51 ref|YP_004304224.1| transcriptional regulator, TetR family [Poly... 171 6e-41 ref|YP_001770713.1| TetR family transcriptional regulator [Methy... 171 8e-41 >ref|YP_770934.1| TetR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] emb|CAK02834.1| putative TetR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 238 Score = 240 bits (613), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 111/208 (53%), Positives = 153/208 (73%) Query: 3 RKTPVKRVRAKQRRLSAVDRRSEFVTKATELFAEEGFGGGTRALAHKLGVTQPLLYRYFP 62 R+T V + K+RRL +RR E + KA LF+E GF TR +A +LG+TQPLLYRYFP Sbjct: 13 RRTMVPKHPTKRRRLPPTERREEILQKAINLFSEHGFESSTREIARQLGITQPLLYRYFP 72 Query: 63 SKDDLIREVYRKVYLEPLEIGWEKVLSDRSRPLRVRLQEFYEIYTDAIFNRRWLRIYLYS 122 SK+DLIRE YR VYLE ++ W+++L DR++PL RL+ FY+ YT AIF R W+RIYL+S Sbjct: 73 SKEDLIREAYRSVYLERWDVEWDRLLCDRTKPLDWRLKAFYDSYTHAIFTRDWMRIYLFS 132 Query: 123 GLKGLDINRWYVGMVKDKILTRILRECRHDAGLATQGRPSAAELELAWVFHGGIFYYGVR 182 GLKG DINRWY+G+++++IL RI++E RH AGL + +P A ELELAW H GIFY GVR Sbjct: 133 GLKGADINRWYIGLLEERILQRIIKEYRHLAGLDGERQPEAEELELAWALHSGIFYLGVR 192 Query: 183 KYIYEAPVLEDKAQMISDALDIFLAGFE 210 ++I+ P +D+ ++I + +D+F G + Sbjct: 193 EHIFSLPPPKDRQKIIGNVVDVFHHGIQ 220 >ref|YP_510892.1| TetR family transcriptional regulator [Jannaschia sp. CCS1] gb|ABD55867.1| transcriptional regulator, TetR family [Jannaschia sp. CCS1] Length = 217 Score = 233 bits (595), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 113/207 (54%), Positives = 149/207 (71%), Gaps = 1/207 (0%) Query: 1 MNRKTPVKRVRAKQRRLSAVDRRSEFVTKATELFAEEGFGGGTRALAHKLGVTQPLLYRY 60 MN + P + +RR+++ +RR EF+TKA E FA+EGF TR LA +LGVTQPLLYRY Sbjct: 1 MNDEAPTEVRPQPRRRMASEERRQEFLTKAIEFFAQEGFESSTRELARRLGVTQPLLYRY 60 Query: 61 FPSKDDLIREVYRKVYLEPLEIGWEKVLSDRSRPLRVRLQEFYEIYTDAIFNRRWLRIYL 120 FPSK+DLI EVY VY++ W +L+DRSRP+R RL EFY YTD +F+ W+RI+L Sbjct: 61 FPSKNDLISEVYDAVYVKRWRDEWADLLTDRSRPMRERLSEFYHAYTDVVFHNDWMRIFL 120 Query: 121 YSGLKGLDINRWYVGMVKDKILTRILRECRHDAGLATQGRPSAAELELAWVFHGGIFYYG 180 +SGLKG+DINR Y+ +V+ +IL IL E RH+AG+ + P+ E+E AW+ HGGIFYYG Sbjct: 121 FSGLKGVDINRRYMALVRARILEPILSELRHEAGM-DELTPTDEEVEFAWIMHGGIFYYG 179 Query: 181 VRKYIYEAPVLEDKAQMISDALDIFLA 207 VR IYEA VL +K+ +I A+D FL Sbjct: 180 VRTIIYEASVLNNKSFVIETAIDSFLG 206 >ref|YP_003692164.1| TetR family transcriptional regulator [Starkeya novella DSM 506] gb|ADH87545.1| transcriptional regulator, TetR family [Starkeya novella DSM 506] Length = 230 Score = 207 bits (527), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 107/202 (52%), Positives = 134/202 (66%), Gaps = 4/202 (1%) Query: 21 DRRSEFVTKATELFAEEGFGGGTRALAHKLGVTQPLLYRYFPSKDDLIREVYRKVYLEPL 80 +R EFV KA ELFAE GF GTR LA +LGVTQPLLYRYFPSKDDLI VY+++Y+ Sbjct: 27 ERHREFVRKAVELFAEVGFEAGTRELAQRLGVTQPLLYRYFPSKDDLIAAVYQEIYVNRW 86 Query: 81 EIGWEKVLSDRSRPLRVRLQEFYEIYTDAIFNRRWLRIYLYSGLKGLDINRWYVGMVKDK 140 + W + L D SRP+R RL FYE YT+ IF WLRIYL++GL+G+DINR Y V+ + Sbjct: 87 KPEWREGLIDESRPIRDRLIAFYEDYTETIFTPEWLRIYLFAGLRGVDINRRYAATVEAE 146 Query: 141 ILTRILRECRHDAGLATQGRPSAAELELAWVFHGGIFYYGVRKYIYEAPVLEDKAQMISD 200 IL I R GL P+ E+EL+W GGIFYYGVR+ +Y P D+A MI + Sbjct: 147 ILRPITVATRKSFGLGDDDPPTPEEVELSWTLQGGIFYYGVREIVYRFPRTVDRATMIRN 206 Query: 201 ALDIFLAG----FERMAESATD 218 A+D FLAG +R+AE +D Sbjct: 207 AVDTFLAGVGSVMKRLAERESD 228 >ref|YP_004304224.1| transcriptional regulator, TetR family [Polymorphum gilvum SL003B-26A1] gb|ADZ70921.1| Transcriptional regulator, TetR family [Polymorphum gilvum SL003B-26A1] Length = 227 Score = 171 bits (434), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 88/203 (43%), Positives = 126/203 (62%), Gaps = 5/203 (2%) Query: 14 QRRLSAVDRRSEFVTKATELFAEEGFGGGTRALAHKLGVTQPLLYRYFPSKDDLIREVYR 73 +RRLS +RR+ + AT F+E G G TR L+ +LGVTQ L++ YF +K DL+ VYR Sbjct: 11 RRRLSPEERRALIIAGATAYFSEVGLDGNTRELSKRLGVTQSLIFNYFATKTDLLEAVYR 70 Query: 74 KVYLEPLEIGWEKVLSDRSRPLRVRLQEFYEIYTDAIFNRRWLRIYLYSGLKGLDINRWY 133 VYL+ + W V++DR+RP+R R FY YT AIF+ W+RI+++SGL G ++NR Y Sbjct: 71 SVYLDRISPDWPGVIADRARPIRERALTFYREYTGAIFSYEWMRIFMFSGLAGAELNRRY 130 Query: 134 VGMVKDKILTRILRECRHDAGLATQGRPSAAELELAWVFHGGIFYYGVRKYIYEAPVLED 193 + V +L +L+E RH+A A + E+E W HGGI Y G+R+Y+Y+ P +D Sbjct: 131 LQHVSTLLLKPLLQEFRHEARAARK-----PEMEDLWNLHGGIVYIGIRRYVYQMPCPDD 185 Query: 194 KAQMISDALDIFLAGFERMAESA 216 I+ A+D FL FE A A Sbjct: 186 SGPAIAAAIDRFLDAFEIGARPA 208 >ref|YP_001770713.1| TetR family transcriptional regulator [Methylobacterium sp. 4-46] gb|ACA18279.1| transcriptional regulator, TetR family [Methylobacterium sp. 4-46] Length = 239 Score = 171 bits (433), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 88/208 (42%), Positives = 127/208 (61%), Gaps = 3/208 (1%) Query: 3 RKTPVKRVRAKQRRLSAVDRRSEFVTKATELFAEEGFGGGTRALAHKLGVTQPLLYRYFP 62 ++ PV+ A +RRLS R E V +A FAE GF G TR LA +L +TQPLLYRYFP Sbjct: 18 QRAPVRAGEAGRRRLSPAQREEEIVREAVGFFAEFGFEGQTRELAKRLNITQPLLYRYFP 77 Query: 63 SKDDLIREVYRKVYLEPLEIGWEKVLSDRSRPLRVRLQEFYEIYTDAIFNRRWLRIYLYS 122 +KD L+ VY++V+L WE+ + D SRPLR RL FY Y I W+R+++++ Sbjct: 78 TKDALVERVYQEVFLRRWNPAWEEAVQDASRPLRERLTAFYTDYASVILTYEWIRLFMFA 137 Query: 123 GLKGLDINRWYVGMVKDKILTRILRECRHDAG-LATQGRPSAA-ELELAWVFHGGIFYYG 180 GLKGLD N Y+ +++++I + I+ + R + G +P+ E+E W H GIFY G Sbjct: 138 GLKGLDFNTRYLDLLRERIFSVIIGQLREEFGRRPLADKPATPLEIEAIWSLHAGIFYLG 197 Query: 181 VRKYIYEAPVLEDKAQMISDALDIFLAG 208 VRK+IY PV +D ++ + +FL G Sbjct: 198 VRKFIYSMPV-DDIPAIVGMKVKMFLDG 224