BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0190.0003.p (408 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_772736.1| pigment protein [Bradyrhizobium japonicum USDA ... 630 e-178 ref|YP_317551.1| putative pigment protein [Nitrobacter winograds... 568 e-160 ref|ZP_01046878.1| putative pigment protein [Nitrobacter sp. Nb-... 561 e-158 ref|YP_578596.1| Acyl-CoA dehydrogenase [Nitrobacter hamburgensi... 548 e-154 ref|YP_003692165.1| acyl-CoA dehydrogenase type 2 domain-contain... 424 e-116 >ref|NP_772736.1| pigment protein [Bradyrhizobium japonicum USDA 110] dbj|BAC51361.1| bll6096 [Bradyrhizobium japonicum USDA 110] Length = 416 Score = 630 bits (1624), Expect = e-178, Method: Compositional matrix adjust. Identities = 297/388 (76%), Positives = 334/388 (86%) Query: 21 YSVMVARAKALVPALRERASRTEELRRLPPETERDLLDSGLFRILQPKRVGGSELDYVAL 80 Y+ M+A+A+ALVP LRERA+RTEELR LPPETERDL D+GLFR+LQPKR+GG+ELDYVAL Sbjct: 29 YAAMIAKARALVPRLRERAARTEELRYLPPETERDLHDAGLFRMLQPKRIGGAELDYVAL 88 Query: 81 VDCADALGQGDASVSWNFANLASHHWMLGMFAPEAQSAVWGEDPDALIASSFVFPAGRAR 140 +DCAD LGQ DAS +WN ANLASHHWMLGMF +AQ VWG DPD LIASSF+FPAGRA Sbjct: 89 IDCADLLGQADASAAWNLANLASHHWMLGMFEQKAQDLVWGSDPDVLIASSFIFPAGRAT 148 Query: 141 KTGGGYVLSGHWPFSSGVESCGWNMLASVVASDDEADGVEYRLFLLNSRDYSIDDTWNAA 200 + GGY L G WPFSSGV SC WNMLASVV+SDDEADG+EYR+FLL DY + DTWN A Sbjct: 149 RVEGGYQLHGSWPFSSGVASCEWNMLASVVSSDDEADGIEYRIFLLPKHDYKVLDTWNVA 208 Query: 201 GLRGTGSNDVRVTDAFVPEHMTVAVSDLAGGATPGSIVNPNALYMLPVFSLFPYVLSGVG 260 GLRGTGS DV V +AFV +HMTVAV +LAGG TPGS VNPN LY LPVFSLFPYVLSGV Sbjct: 209 GLRGTGSCDVEVREAFVADHMTVAVGELAGGPTPGSKVNPNPLYALPVFSLFPYVLSGVA 268 Query: 261 LGNAQACLDDYVEIARHRASTYNRAKIGDLQSTQIKIAEASAKIDAARLIMRTNCVEALA 320 LGNAQACL+DY+E+ RHR STYNRAK+ D QSTQIKIAEASAKIDAAR MR+ C++A+ Sbjct: 269 LGNAQACLNDYIEVVRHRISTYNRAKLSDFQSTQIKIAEASAKIDAARRTMRSACIDAME 328 Query: 321 EVRRGDIPDIAAKTKLRRDGAFAVNLCTEAVSLLFAAGGARSLFTSGALQRQFRDAHAVN 380 + RR IPD+A KT+ RRDGAF+VNLCT+AVS+LFAA GAR LFT+G LQRQFRDAHA+N Sbjct: 329 DARRSHIPDMATKTRYRRDGAFSVNLCTDAVSMLFAASGARGLFTAGVLQRQFRDAHAIN 388 Query: 381 SHLAFNFDAAGTNYGRVALGLPSENLTL 408 SHLAFNFDAAGTNYGRVALGLPSENLTL Sbjct: 389 SHLAFNFDAAGTNYGRVALGLPSENLTL 416 >ref|YP_317551.1| putative pigment protein [Nitrobacter winogradskyi Nb-255] gb|ABA04199.1| putative pigment protein [Nitrobacter winogradskyi Nb-255] Length = 409 Score = 568 bits (1463), Expect = e-160, Method: Compositional matrix adjust. Identities = 274/388 (70%), Positives = 328/388 (84%) Query: 21 YSVMVARAKALVPALRERASRTEELRRLPPETERDLLDSGLFRILQPKRVGGSELDYVAL 80 Y+ ++ARA+ALVP LR+RA+R+EELRRLPPETE++ D+GLF+ILQP+RVGG ELDYVAL Sbjct: 22 YAAVMARARALVPELRDRAARSEELRRLPPETEKEFHDAGLFKILQPRRVGGLELDYVAL 81 Query: 81 VDCADALGQGDASVSWNFANLASHHWMLGMFAPEAQSAVWGEDPDALIASSFVFPAGRAR 140 VD A+A+ DAS +W ANLASHHWMLGMF AQ AVW +DP+ALIASSFVFP+GRA Sbjct: 82 VDLAEAIAVADASAAWTLANLASHHWMLGMFDRRAQDAVWAKDPNALIASSFVFPSGRAT 141 Query: 141 KTGGGYVLSGHWPFSSGVESCGWNMLASVVASDDEADGVEYRLFLLNSRDYSIDDTWNAA 200 K GGY L G WPFSSGV+ C WNMLA V+SDDEADG+EYR+FL+ Y I D WNAA Sbjct: 142 KVEGGYRLQGRWPFSSGVDCCTWNMLAGHVSSDDEADGIEYRIFLVPRERYRIIDMWNAA 201 Query: 201 GLRGTGSNDVRVTDAFVPEHMTVAVSDLAGGATPGSIVNPNALYMLPVFSLFPYVLSGVG 260 GL+GTGSNDV D FV E MT++V+D+AGG +PGS VNPN LY LPVF+LFP+VLSGV Sbjct: 202 GLKGTGSNDVAADDLFVEEAMTLSVADIAGGPSPGSAVNPNPLYALPVFALFPFVLSGVA 261 Query: 261 LGNAQACLDDYVEIARHRASTYNRAKIGDLQSTQIKIAEASAKIDAARLIMRTNCVEALA 320 LGNAQ CL+DY+EIARHRA+T+NRA++GDLQSTQIKIAEASAKIDAARL+MR+ C+ A++ Sbjct: 262 LGNAQGCLNDYIEIARHRATTFNRARLGDLQSTQIKIAEASAKIDAARLVMRSICIRAIS 321 Query: 321 EVRRGDIPDIAAKTKLRRDGAFAVNLCTEAVSLLFAAGGARSLFTSGALQRQFRDAHAVN 380 + +RG +PD+A KT RRDGA+AV LCTEAVSLLFA+ GAR LF + LQRQFRDA A+N Sbjct: 322 DAKRGLVPDMAVKTGWRRDGAYAVTLCTEAVSLLFASSGARGLFAAAPLQRQFRDAVAIN 381 Query: 381 SHLAFNFDAAGTNYGRVALGLPSENLTL 408 SH+AF+FDAAGT+YGRVALGLPS+NLTL Sbjct: 382 SHIAFSFDAAGTDYGRVALGLPSQNLTL 409 >ref|ZP_01046878.1| putative pigment protein [Nitrobacter sp. Nb-311A] gb|EAQ35187.1| putative pigment protein [Nitrobacter sp. Nb-311A] Length = 402 Score = 561 bits (1447), Expect = e-158, Method: Compositional matrix adjust. Identities = 273/384 (71%), Positives = 323/384 (84%) Query: 25 VARAKALVPALRERASRTEELRRLPPETERDLLDSGLFRILQPKRVGGSELDYVALVDCA 84 + RA+ALVP LR+RA+RTEELRRLPPETE++ ++GLFRILQPKRVGG E DYVALVD A Sbjct: 19 MTRARALVPDLRDRAARTEELRRLPPETEKEFHEAGLFRILQPKRVGGFEFDYVALVDVA 78 Query: 85 DALGQGDASVSWNFANLASHHWMLGMFAPEAQSAVWGEDPDALIASSFVFPAGRARKTGG 144 +A+ DAS +W ANLASH+WMLGMF AQ AVWG+DP+ALIASSFVFP+G A K G Sbjct: 79 EAIAMADASAAWTLANLASHNWMLGMFDSRAQDAVWGKDPNALIASSFVFPSGCASKVEG 138 Query: 145 GYVLSGHWPFSSGVESCGWNMLASVVASDDEADGVEYRLFLLNSRDYSIDDTWNAAGLRG 204 GY L GHWPFSSGV+ C WNMLA V+SDDEADG+EYR+FL+ Y I D WNAAGL+G Sbjct: 139 GYRLQGHWPFSSGVDCCAWNMLAGHVSSDDEADGIEYRIFLVPRERYRIIDMWNAAGLKG 198 Query: 205 TGSNDVRVTDAFVPEHMTVAVSDLAGGATPGSIVNPNALYMLPVFSLFPYVLSGVGLGNA 264 TGSNDV V D FV E MT++V+D+AGG +PGS VNPN LY LPVF+LFP+VLSGV LGNA Sbjct: 199 TGSNDVAVDDVFVEEWMTLSVADIAGGPSPGSAVNPNPLYALPVFALFPFVLSGVALGNA 258 Query: 265 QACLDDYVEIARHRASTYNRAKIGDLQSTQIKIAEASAKIDAARLIMRTNCVEALAEVRR 324 Q CL+DY+E ARHRA+T +RA++GDLQSTQIKIAEASAKIDAARLIMR+ C+ A+++ RR Sbjct: 259 QGCLNDYIETARHRATTVSRARLGDLQSTQIKIAEASAKIDAARLIMRSICIRAMSDSRR 318 Query: 325 GDIPDIAAKTKLRRDGAFAVNLCTEAVSLLFAAGGARSLFTSGALQRQFRDAHAVNSHLA 384 G +PD+ KT RRDGA+AV LCTEAVSLLFA+ GAR LF + LQRQFRDA+A+NSH+A Sbjct: 319 GLVPDMVVKTGWRRDGAYAVTLCTEAVSLLFASSGARGLFAAAPLQRQFRDANAINSHIA 378 Query: 385 FNFDAAGTNYGRVALGLPSENLTL 408 F+FDAAGT+YGRVALGLPS+NLTL Sbjct: 379 FSFDAAGTDYGRVALGLPSQNLTL 402 >ref|YP_578596.1| Acyl-CoA dehydrogenase [Nitrobacter hamburgensis X14] gb|ABE64136.1| Acyl-CoA dehydrogenase [Nitrobacter hamburgensis X14] Length = 409 Score = 548 bits (1412), Expect = e-154, Method: Compositional matrix adjust. Identities = 277/395 (70%), Positives = 325/395 (82%), Gaps = 1/395 (0%) Query: 14 PGPDMDRYSVMVARAKALVPALRERASRTEELRRLPPETERDLLDSGLFRILQPKRVGGS 73 P P+ + Y+ M+ RA+ALVP LR+RA+RTEELRRLPPETE D +GLF ILQPKRVGGS Sbjct: 16 PDPNDNAYAAMMVRARALVPELRDRAARTEELRRLPPETEADFQAAGLFGILQPKRVGGS 75 Query: 74 ELDYVALVDCADALGQGDASVSWNFANLASHHWMLGMFAPEAQSAVWGEDPDALIASSFV 133 E DYVALVD A+A+ DAS +W ANLASHHWMLGMF AQ VW +AL ASSFV Sbjct: 76 EFDYVALVDFAEAIAIADASAAWTLANLASHHWMLGMFDSRAQDVVWTRGANALTASSFV 135 Query: 134 FPAGRARKTGGGYVLSGHWPFSSGVESCGWNMLASVVASDDEADGVEYRLFLLNSRDYSI 193 FPAGRARK GY L G WPFSSGV+ C WNMLA +V++DDEADG+EYR+FLL +DY I Sbjct: 136 FPAGRARKVEDGYRLQGRWPFSSGVDCCAWNMLAGIVSTDDEADGIEYRIFLLPRKDYRI 195 Query: 194 DDTWNAAGLRGTGSNDVRVTDAFVPEHMTVAVSDLAGGATPGSIVNPNALYMLPVFSLFP 253 D W AAGL+GTGSNDV V D FV MT++V+D+AGG +PGS+VNPN LY LPVF+LFP Sbjct: 196 IDMWKAAGLKGTGSNDVAVDDVFVDSWMTLSVADIAGGPSPGSVVNPNPLYALPVFALFP 255 Query: 254 YVLSGVGLGNAQACLDDYVEIARHRASTYNRAKIGDLQSTQIKIAEASAKIDAARLIMRT 313 +VLSGV LGNA+ CLDDY+E+A HRA+TY AK+GDLQSTQIKIAEASAKIDAARLIMR+ Sbjct: 256 FVLSGVALGNARGCLDDYIEVAHHRATTYG-AKLGDLQSTQIKIAEASAKIDAARLIMRS 314 Query: 314 NCVEALAEVRRGDIPDIAAKTKLRRDGAFAVNLCTEAVSLLFAAGGARSLFTSGALQRQF 373 C++A+ + RRG +PD+A KT RRDGA+AVNLCTEAVSLLFAA GAR LF+ LQRQF Sbjct: 315 TCIKAMRDARRGLVPDMAVKTGWRRDGAYAVNLCTEAVSLLFAASGARGLFSGAPLQRQF 374 Query: 374 RDAHAVNSHLAFNFDAAGTNYGRVALGLPSENLTL 408 RDA+A+NSH+AF+FDAAGT+YGRVALGLPS+NLTL Sbjct: 375 RDANAINSHIAFSFDAAGTDYGRVALGLPSQNLTL 409 >ref|YP_003692165.1| acyl-CoA dehydrogenase type 2 domain-containing protein [Starkeya novella DSM 506] gb|ADH87546.1| Acyl-CoA dehydrogenase type 2 domain protein [Starkeya novella DSM 506] Length = 406 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 207/387 (53%), Positives = 267/387 (68%), Gaps = 2/387 (0%) Query: 19 DRYSVMVARAKALVPALRERASRTEELRRLPPETERDLLDSGLFRILQPKRVGGSELDYV 78 R+ ++ RA L A ERA R EEL RLPPE ERDL +SGL+R+LQP+ VGGSE+ Y Sbjct: 19 QRHDELLQRATDLATAFAERAPRAEELSRLPPENERDLHESGLYRMLQPEAVGGSEVGYE 78 Query: 79 ALVDCADALGQGDASVSWNFANLASHHWMLGMFAPEAQSAVWGEDPDALIASSFVFPAGR 138 +L+ AL G AS +WN NLASHHWML MFAP AQ +W EDPDALIASSFVFPA + Sbjct: 79 SLITIGAALAAGCASTAWNLTNLASHHWMLAMFAPAAQDRIWREDPDALIASSFVFPAAK 138 Query: 139 ARKTGGGYVLSGHWPFSSGVESCGWNMLASVVASDDEADGVEYRLFLLNSRDYSIDDTWN 198 K GGYVLSG WPFSSGV+ C WNMLA +V ++ EA ++R+FL+ DY I DTW+ Sbjct: 139 VTKAPGGYVLSGRWPFSSGVDVCSWNMLAGIVRAEGEAP--DHRVFLVPRSDYRILDTWH 196 Query: 199 AAGLRGTGSNDVRVTDAFVPEHMTVAVSDLAGGATPGSIVNPNALYMLPVFSLFPYVLSG 258 GL+GTGSNDV+ + FVPE M+V+V L GG TPGS +P LY LPVF+LFP +LSG Sbjct: 197 VTGLKGTGSNDVQCEEVFVPEEMSVSVEHLKGGLTPGSERHPAPLYRLPVFALFPAILSG 256 Query: 259 VGLGNAQACLDDYVEIARHRASTYNRAKIGDLQSTQIKIAEASAKIDAARLIMRTNCVEA 318 VGLGN + L YV R R++ Y A++ +LQS QI I A+ ++ AR +M C EA Sbjct: 257 VGLGNGEGALTAYVAATRKRSANYTGARLAELQSIQIHIGNAATRLAHARRVMLAICEEA 316 Query: 319 LAEVRRGDIPDIAAKTKLRRDGAFAVNLCTEAVSLLFAAGGARSLFTSGALQRQFRDAHA 378 + + RG +PD+ K RRD A+A L T+AV + A GA++L+ SG+ QR+FRDAHA Sbjct: 317 MRDAERGHVPDMVTKFAYRRDLAYATKLTTKAVDEINAGSGAQALYLSGSQQRRFRDAHA 376 Query: 379 VNSHLAFNFDAAGTNYGRVALGLPSEN 405 +++H+AF+ D A +GR+ALGL +N Sbjct: 377 ISAHIAFSTDVANAAFGRLALGLEVDN 403