BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0189.0025.p         (63 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_002540918.1| hypothetical protein Arad_7927 [Agrobacteriu...    94   7e-18
ref|YP_004681534.1| hypothetical protein CNE_2c13390 [Cupriavidu...    82   2e-14
ref|YP_004677102.1| hypothetical protein HYPMC_3321 [Hyphomicrob...    82   3e-14
ref|YP_002008333.1| hypothetical protein RALTA_B1687 [Cupriavidu...    81   4e-14
ref|YP_001889893.1| hypothetical protein Bphyt_6195 [Burkholderi...    80   9e-14

>ref|YP_002540918.1| hypothetical protein Arad_7927 [Agrobacterium radiobacter K84]
 gb|ACM29322.1| hypothetical protein Arad_7927 [Agrobacterium radiobacter K84]
          Length = 79

 Score = 94.0 bits (232), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 43/62 (69%), Positives = 51/62 (82%)

Query: 2  DYDLYINPKKTSVGLYVRKGAGLPDLADAKDWVFDGTSAQANLPPQLVKEIEANGHAFRD 61
          +YDLYIN KK  +GLYVR GA LPD AD KDWVFDGT+AQ  LPP +V+ +EA+GHAFRD
Sbjct: 18 EYDLYINVKKPGMGLYVRAGAALPDFADPKDWVFDGTAAQDLLPPSVVEGVEADGHAFRD 77

Query: 62 MN 63
          M+
Sbjct: 78 MD 79


>ref|YP_004681534.1| hypothetical protein CNE_2c13390 [Cupriavidus necator N-1]
 gb|AEI80302.1| hypothetical protein CNE_2c13390 [Cupriavidus necator N-1]
          Length = 65

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/62 (58%), Positives = 49/62 (79%)

Query: 2  DYDLYINPKKTSVGLYVRKGAGLPDLADAKDWVFDGTSAQANLPPQLVKEIEANGHAFRD 61
          +YD YIN  K ++GLYVRKGAGL DLADAK+W  +GT  ++ LPP ++K +EANGHAF++
Sbjct: 3  EYDFYINLLKPTLGLYVRKGAGLQDLADAKEWQLEGTVPESALPPGMLKGLEANGHAFQE 62

Query: 62 MN 63
          + 
Sbjct: 63 LG 64


>ref|YP_004677102.1| hypothetical protein HYPMC_3321 [Hyphomicrobium sp. MC1]
 emb|CCB66536.1| conserved protein of unknown function [Hyphomicrobium sp. MC1]
          Length = 87

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 45/60 (75%)

Query: 3  YDLYINPKKTSVGLYVRKGAGLPDLADAKDWVFDGTSAQANLPPQLVKEIEANGHAFRDM 62
          YDLYIN KK  +GLYV  G+ LPD AD +DW+FDGT+ Q  LP  +V+ +EANGHAFR+ 
Sbjct: 17 YDLYINEKKPGIGLYVPNGSSLPDFADPRDWIFDGTAEQDLLPSSVVEGVEANGHAFRNC 76


>ref|YP_002008333.1| hypothetical protein RALTA_B1687 [Cupriavidus taiwanensis LMG
          19424]
 emb|CAQ72279.1| hypothetical protein RALTA_B1687 [Cupriavidus taiwanensis LMG
          19424]
          Length = 65

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 34/62 (54%), Positives = 49/62 (79%)

Query: 2  DYDLYINPKKTSVGLYVRKGAGLPDLADAKDWVFDGTSAQANLPPQLVKEIEANGHAFRD 61
          ++D Y+N KK ++GLYVRKGAGLPDLADA  W  +GT A+ ++PP ++K + ANGHAF++
Sbjct: 3  EFDFYLNLKKPTLGLYVRKGAGLPDLADAAQWRLEGTVAETDVPPDVLKGLSANGHAFQE 62

Query: 62 MN 63
          + 
Sbjct: 63 LG 64


>ref|YP_001889893.1| hypothetical protein Bphyt_6195 [Burkholderia phytofirmans PsJN]
 gb|ACD20522.1| conserved hypothetical protein [Burkholderia phytofirmans PsJN]
          Length = 65

 Score = 80.1 bits (196), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 35/61 (57%), Positives = 46/61 (75%)

Query: 2  DYDLYINPKKTSVGLYVRKGAGLPDLADAKDWVFDGTSAQANLPPQLVKEIEANGHAFRD 61
          ++D YIN KK ++GLYVR GAGLPDLAD  DW F+G   Q+ L P L+K +EANGH F++
Sbjct: 3  EFDFYINLKKPTLGLYVRNGAGLPDLADKSDWQFEGHVWQSELTPDLLKGLEANGHVFQE 62

Query: 62 M 62
          +
Sbjct: 63 L 63