BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0189.0012.p (391 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770002.1| hypothetical protein blr3362 [Bradyrhizobium ja... 580 e-163 ref|NP_949919.1| lipopolysaccharide biosynthesis [Rhodopseudomon... 527 e-147 ref|YP_001994029.1| lipopolysaccharide biosynthesis protein [Rho... 525 e-147 ref|YP_004111049.1| lipopolysaccharide biosynthesis protein [Rho... 513 e-143 ref|ZP_05115744.1| Chain length determinant protein [Labrenzia a... 266 3e-69 >ref|NP_770002.1| hypothetical protein blr3362 [Bradyrhizobium japonicum USDA 110] dbj|BAC48627.1| blr3362 [Bradyrhizobium japonicum USDA 110] Length = 698 Score = 580 bits (1495), Expect = e-163, Method: Compositional matrix adjust. Identities = 306/375 (81%), Positives = 339/375 (90%) Query: 1 VAFFRENGQRILMLAAVIFAVGVILLMLIPARYAATALVVVDPREQRVTTDQDVLPGIGQ 60 ++F R+N +RIL LA IFA+GVILL++IP R+AATALVVVDPREQRVT DQDVLPGIGQ Sbjct: 48 LSFIRDNARRILALALAIFALGVILLLVIPVRFAATALVVVDPREQRVTADQDVLPGIGQ 107 Query: 61 DAAALQSYVEIAKSDGFLGPVIEQLKVAEDSDISGGRTDPTRLLDRFRNRLDISRRGLTY 120 D+AALQS VE+AKSDGFL P+IEQLK+ +D DISGG TDP RLL+RFRNRLDISRRGLTY Sbjct: 108 DSAALQSLVEVAKSDGFLKPLIEQLKIRDDEDISGGHTDPARLLERFRNRLDISRRGLTY 167 Query: 121 VIAIKFTSNDPRRAAYYANAVAEAFVASQRGTRSVATDEAADWLKSRLKTLNDRLRSSED 180 VIAI+FTSN P RAAYYANA+AEAFVASQ R+ ATDEAADWL RLKTLNDRLR+SED Sbjct: 168 VIAIRFTSNRPERAAYYANAIAEAFVASQSRNRTDATDEAADWLSGRLKTLNDRLRASED 227 Query: 181 AVAKFKLEHRIVNAGKESTTQQLRVTDLTQQVAAARARTEEAKVRYEQLQRDLKANVDGP 240 AVA FKLEHRIVNAGK+STTQQLRVT+L+QQVAAARARTEEAK RYEQ QRD+KANV+GP Sbjct: 228 AVATFKLEHRIVNAGKDSTTQQLRVTELSQQVAAARARTEEAKARYEQAQRDVKANVEGP 287 Query: 241 VKQDLLSALRAQRSALNDQIAQKRGVLGDRHPDLVMALSQLGDLNRQIEIERKKNIDTAK 300 KQDLLSALRAQRSALNDQIAQKR V GDRHPDLVM+ SQL DLNRQIE+ER K+IDTAK Sbjct: 288 AKQDLLSALRAQRSALNDQIAQKRAVFGDRHPDLVMSYSQLNDLNRQIEVERAKSIDTAK 347 Query: 301 SEYEAQRDQQKALEDQQKAVEQQILVDGQALVKLQELQRDADANKNIYEQFLSRYKTTDE 360 SEYEAQR+QQKALE Q KA E Q+LVDGQALV+LQELQRDA+AN+NIYEQFLSR KTT+E Sbjct: 348 SEYEAQREQQKALEGQMKAAESQLLVDGQALVRLQELQRDAEANRNIYEQFLSRSKTTNE 407 Query: 361 QRLLQSSQTKVASPA 375 QRLLQSSQTK+AS A Sbjct: 408 QRLLQSSQTKIASSA 422 >ref|NP_949919.1| lipopolysaccharide biosynthesis [Rhodopseudomonas palustris CGA009] emb|CAE30025.1| Lipopolysaccharide biosynthesis [Rhodopseudomonas palustris CGA009] Length = 718 Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust. Identities = 261/373 (69%), Positives = 318/373 (85%), Gaps = 2/373 (0%) Query: 3 FFRENGQRILMLAAVIFAVGVILLMLIPARYAATALVVVDPREQRVTTDQDVLPGIGQDA 62 F R N +RI +LA+ +F +G+I+L L+P RYAATALV+VDPREQRVTTDQ+VLPGIGQDA Sbjct: 48 FLRNNLKRIALLASALFVLGMIVLWLLPVRYAATALVMVDPREQRVTTDQEVLPGIGQDA 107 Query: 63 AALQSYVEIAKSDGFLGPVIEQLKVAEDSDISGGRTDPTRLLDRFRNRLDISRRGLTYVI 122 AALQS +EIAKSDGFL P++E+LKVAED +I+G TDP R+LDRFR L+I+RRGLTYVI Sbjct: 108 AALQSLIEIAKSDGFLRPLVEKLKVAEDHEIAGSETDPARVLDRFRKHLEIARRGLTYVI 167 Query: 123 AIKFTSNDPRRAAYYANAVAEAFVASQRGTRSVATDEAADWLKSRLKTLNDRLRSSEDAV 182 + F + DP+RAAYYANAVAEAFVASQ R+VA DEAA WL SRLKTLN++LR+SEDAV Sbjct: 168 EMTFVAKDPQRAAYYANAVAEAFVASQTQVRAVAADEAAGWLSSRLKTLNEKLRASEDAV 227 Query: 183 AKFKLEHRIVNAGKESTTQQLRVTDLTQQVAAARARTEEAKVRYEQLQRDLKANVDGPV- 241 A FK ++RIV+AG+ESTT+QLRVT+LTQQV+AAR RTEEAK RYEQ QRDLK++VDG Sbjct: 228 AAFKTQYRIVDAGRESTTRQLRVTELTQQVSAARLRTEEAKNRYEQAQRDLKSDVDGSTG 287 Query: 242 -KQDLLSALRAQRSALNDQIAQKRGVLGDRHPDLVMALSQLGDLNRQIEIERKKNIDTAK 300 K DL+S LR QR+ LNDQIAQKR VLGDRHP+LV+A +QL +LNRQIE ERK+NI +AK Sbjct: 288 SKSDLVSVLRTQRTQLNDQIAQKRAVLGDRHPELVIAYNQLAELNRQIEAERKRNIVSAK 347 Query: 301 SEYEAQRDQQKALEDQQKAVEQQILVDGQALVKLQELQRDADANKNIYEQFLSRYKTTDE 360 S+Y+A RDQ KALE Q K++E ++L D QA VKL+ELQR+A+AN+ IYEQFL RY TT++ Sbjct: 348 SDYDAMRDQLKALEQQLKSLETEMLGDDQAAVKLKELQREANANRAIYEQFLERYNTTNQ 407 Query: 361 QRLLQSSQTKVAS 373 QRLLQ++QTKVAS Sbjct: 408 QRLLQATQTKVAS 420 >ref|YP_001994029.1| lipopolysaccharide biosynthesis protein [Rhodopseudomonas palustris TIE-1] gb|ACF03554.1| lipopolysaccharide biosynthesis protein [Rhodopseudomonas palustris TIE-1] Length = 718 Score = 525 bits (1351), Expect = e-147, Method: Compositional matrix adjust. Identities = 260/373 (69%), Positives = 317/373 (84%), Gaps = 2/373 (0%) Query: 3 FFRENGQRILMLAAVIFAVGVILLMLIPARYAATALVVVDPREQRVTTDQDVLPGIGQDA 62 F R+N +RI +LA+ +F +G+I+L L+P RYAATALV+VDPREQRVTTDQ+VLPGIGQDA Sbjct: 48 FLRDNLKRIALLASALFVLGMIVLWLLPVRYAATALVMVDPREQRVTTDQEVLPGIGQDA 107 Query: 63 AALQSYVEIAKSDGFLGPVIEQLKVAEDSDISGGRTDPTRLLDRFRNRLDISRRGLTYVI 122 AALQS +EIAKSDGFL P++E+LKVAED +I+G TDP R+LDRFR L+I+RRGLTYVI Sbjct: 108 AALQSLIEIAKSDGFLRPLVEKLKVAEDHEIAGSETDPARVLDRFRKHLEIARRGLTYVI 167 Query: 123 AIKFTSNDPRRAAYYANAVAEAFVASQRGTRSVATDEAADWLKSRLKTLNDRLRSSEDAV 182 + F + DP+RAAYYANAVAEAFVASQ R+VA DEAA WL SRLKTLN++LR+SEDAV Sbjct: 168 EMTFLAKDPQRAAYYANAVAEAFVASQTQVRAVAADEAAGWLSSRLKTLNEKLRASEDAV 227 Query: 183 AKFKLEHRIVNAGKESTTQQLRVTDLTQQVAAARARTEEAKVRYEQLQRDLKANVDGPV- 241 A FK ++RIV+AG+ESTT QLRVT+LTQQV+AAR RTEEAK RYEQ QRDLK++VDG Sbjct: 228 AAFKTQYRIVDAGRESTTLQLRVTELTQQVSAARLRTEEAKNRYEQAQRDLKSDVDGSTG 287 Query: 242 -KQDLLSALRAQRSALNDQIAQKRGVLGDRHPDLVMALSQLGDLNRQIEIERKKNIDTAK 300 K DL+S LR QR+ LNDQIAQKR VLGDRHP+LV+A +QL +LNRQIE ERK+NI +AK Sbjct: 288 SKSDLVSVLRTQRTQLNDQIAQKRAVLGDRHPELVIAYNQLAELNRQIEAERKRNIVSAK 347 Query: 301 SEYEAQRDQQKALEDQQKAVEQQILVDGQALVKLQELQRDADANKNIYEQFLSRYKTTDE 360 S+Y+A RDQ K LE Q K++E ++L D QA VKL+ELQR+A+AN+ IYEQFL RY TT++ Sbjct: 348 SDYDAMRDQLKTLEQQLKSLETEMLGDDQAAVKLKELQREANANRAIYEQFLERYNTTNQ 407 Query: 361 QRLLQSSQTKVAS 373 QRLLQ++QTKVAS Sbjct: 408 QRLLQATQTKVAS 420 >ref|YP_004111049.1| lipopolysaccharide biosynthesis protein [Rhodopseudomonas palustris DX-1] gb|ADU46316.1| lipopolysaccharide biosynthesis protein [Rhodopseudomonas palustris DX-1] Length = 705 Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust. Identities = 262/385 (68%), Positives = 321/385 (83%), Gaps = 2/385 (0%) Query: 2 AFFRENGQRILMLAAVIFAVGVILLMLIPARYAATALVVVDPREQRVTTDQDVLPGIGQD 61 F +N +RI AAV+FA+G++ L L+PA+YAATALV+VDPREQRVT DQ+VLPGIGQD Sbjct: 44 GFLLDNARRIAAAAAVLFALGIVGLWLVPAKYAATALVIVDPREQRVTPDQEVLPGIGQD 103 Query: 62 AAALQSYVEIAKSDGFLGPVIEQLKVAEDSDISGGRTDPTRLLDRFRNRLDISRRGLTYV 121 AAALQS VEIAKSDGFL P+I++LKVA+D +ISGG TD R+L++FR L+I+RRGLTYV Sbjct: 104 AAALQSLVEIAKSDGFLEPLIDKLKVADDYEISGGETDRARVLEKFRKHLEIARRGLTYV 163 Query: 122 IAIKFTSNDPRRAAYYANAVAEAFVASQRGTRSVATDEAADWLKSRLKTLNDRLRSSEDA 181 IA+ F S DP+RAA YANA+A AFVASQ TR+VATD+AA WL SRLKTL+D+LR+SEDA Sbjct: 164 IAMTFVSKDPQRAADYANAIASAFVASQTNTRTVATDDAAAWLNSRLKTLSDKLRASEDA 223 Query: 182 VAKFKLEHRIVNAGKESTTQQLRVTDLTQQVAAARARTEEAKVRYEQLQRDLKANVDGPV 241 +A FK ++RIV+AGKESTT+QLRVT+LTQQV+AAR + EEA+ RYEQ QRDLK++VDG Sbjct: 224 IAAFKTQYRIVDAGKESTTRQLRVTELTQQVSAARLQVEEARGRYEQAQRDLKSDVDGST 283 Query: 242 --KQDLLSALRAQRSALNDQIAQKRGVLGDRHPDLVMALSQLGDLNRQIEIERKKNIDTA 299 K DLL+ALRAQ + LNDQIAQKR VLGDRHPDLVM+ +QL +L RQIE+ER++N+ A Sbjct: 284 GSKSDLLTALRAQLNQLNDQIAQKRAVLGDRHPDLVMSYNQLAELKRQIEVERRRNVANA 343 Query: 300 KSEYEAQRDQQKALEDQQKAVEQQILVDGQALVKLQELQRDADANKNIYEQFLSRYKTTD 359 KS+YEA D+QK LE Q K +E +L D QA VKLQELQR+ADAN+ IYEQFL+RY T+ Sbjct: 344 KSDYEALLDKQKTLEAQLKQLEGDMLTDAQAAVKLQELQREADANRAIYEQFLARYNATN 403 Query: 360 EQRLLQSSQTKVASPATPPVHSTLP 384 +QRLLQ++QTKVAS ATPP ST P Sbjct: 404 QQRLLQATQTKVASLATPPSRSTRP 428 >ref|ZP_05115744.1| Chain length determinant protein [Labrenzia alexandrii DFL-11] gb|EEE46343.1| Chain length determinant protein [Labrenzia alexandrii DFL-11] Length = 683 Score = 266 bits (681), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 154/388 (39%), Positives = 228/388 (58%), Gaps = 6/388 (1%) Query: 1 VAFFRENGQRILMLAAVIFAVGVILLMLIPARYAATALVVVDPREQRVTTDQDVLPGIGQ 60 V FFR N RI ++ AV+ A+ ++L P Y ATALV+VDPRE+RVT ++VLPGIG Sbjct: 8 VGFFRRNLVRITIITAVLTAIALVLFSFYPFPYKATALVLVDPRERRVTLTENVLPGIGS 67 Query: 61 DAAALQSYVEIAKSDGFLGPVIEQLKVAEDSDISGG-RTDPTRLLDRFRNRLDISRRGLT 119 DAA L+S V+I SDGFL PV+E L D + +D LL F+ RL ++R G T Sbjct: 68 DAAFLESIVQIVHSDGFLRPVLEDLDAKSDPVFARSVGSDDRELLAAFKRRLQVNRVGAT 127 Query: 120 YVIAIKFTSNDPRRAAYYANAVAEAFVASQRGTRSVATDEAADWLKSRLKTLNDRLRSSE 179 +++ I F+SNDP ++A YANA+A+AFV SQ A AA L+ RL L L SE Sbjct: 128 FIVEISFSSNDPEKSALYANAIAQAFVDSQTNALVSANATAASSLEERLNDLRSNLEVSE 187 Query: 180 DAVAKFKLEHRIVNAGKESTTQQLRVTDLTQQVAAARARTEEAKVRYEQLQRDLKANVDG 239 AVA FK E+ I+ ++ST Q + L +Q+ AA+A TE + R E++ A + Sbjct: 188 KAVASFKAENGIIGVTQDSTLLQRELITLNEQIVAAKAETEAIRSRVEKI--STGAGLPS 245 Query: 240 PVKQD---LLSALRAQRSALNDQIAQKRGVLGDRHPDLVMALSQLGDLNRQIEIERKKNI 296 +Q L+ LR++R + +++ V GDRHP + S+L + RQI +E+ + + Sbjct: 246 TTEQSDAAQLAELRSERGQILQNLSEFSRVYGDRHPRVTSERSKLAGIERQISLEQSRLL 305 Query: 297 DTAKSEYEAQRDQQKALEDQQKAVEQQILVDGQALVKLQELQRDADANKNIYEQFLSRYK 356 K E+ +AL +Q +Q G+A+V+L L+R+A AN+ +YE+FL+R+K Sbjct: 306 AIQKERLESANSTLQALTNQLNQRKQTAHRTGRAMVQLASLEREATANRQLYEEFLARFK 365 Query: 357 TTDEQRLLQSSQTKVASPATPPVHSTLP 384 T++Q L+ Q ++ASPA PP+ P Sbjct: 366 ATEKQSGLELGQARIASPALPPLKPNRP 393