BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0189.0008.p (471 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770000.1| hypothetical protein bll3360 [Bradyrhizobium ja... 630 e-178 ref|YP_568248.1| hypothetical protein RPD_1109 [Rhodopseudomonas... 482 e-134 ref|YP_484627.1| hypothetical protein RPB_1006 [Rhodopseudomonas... 476 e-132 ref|YP_001994031.1| hypothetical protein Rpal_5067 [Rhodopseudom... 460 e-127 ref|YP_004111051.1| hypothetical protein Rpdx1_4772 [Rhodopseudo... 458 e-126 >ref|NP_770000.1| hypothetical protein bll3360 [Bradyrhizobium japonicum USDA 110] dbj|BAC48625.1| bll3360 [Bradyrhizobium japonicum USDA 110] Length = 511 Score = 630 bits (1626), Expect = e-178, Method: Compositional matrix adjust. Identities = 304/418 (72%), Positives = 342/418 (81%), Gaps = 2/418 (0%) Query: 1 MIIEFRCDRAQARLWMRREMLRVSDQDIPVQIAWTTTPGPRLAGLDMLFELERIVLRKGK 60 MIIEFRC+R AR WM RE L V +D+PVQIAWT T R AGLD LF LER+VL KGK Sbjct: 1 MIIEFRCEREHARRWMHRETLSVDGRDVPVQIAWTATAESRPAGLDALFALERMVLHKGK 60 Query: 61 AGDADRLKTIAER--PRMGNPDVVVDFTTAERDPNCSPRLYLRPRFNGQVGEVAALAAIL 118 G AD LK I +R R G DV+VDFT RD +CS LYLRP FNG GE AALAAIL Sbjct: 61 PGGADGLKIIPKRTQARTGTADVIVDFTGGARDRDCSASLYLRPLFNGTAGENAALAAIL 120 Query: 119 AGDLPVIEIVNELDGTVMDRGHPSAEIAAGLSGGLETVMARTLSMLPPILSGAPRLVPQL 178 AGD+PVI+IVNE+DG V+DRGHPS E AAGLSG LETVMARTL+M+ ILSG PR++PQL Sbjct: 121 AGDMPVIDIVNEIDGAVLDRGHPSGETAAGLSGALETVMARTLTMVAAILSGRPRILPQL 180 Query: 179 AVPAAGSAPRNPVPFVLRGVATSIAKEIYRLCCYAPHWHVGWRYADNADVWRTGDLSGPA 238 + PA R PV +V+RG+ SIAKEIYRLCCYAPHWH+GWR+ D A VW+TGDLSGP Sbjct: 181 SRPAGAMNRRGPVGYVVRGLVVSIAKEIYRLCCYAPHWHIGWRFNDGAGVWQTGDLSGPR 240 Query: 239 WNVLGDPGNHFYADPVPVKWQGRTFVFFEDLDHRTGKGIISAIEFDGNGPVGTVLPVLEE 298 WNVLGDPGNHFYADP PV W+GRTFVFFEDLDHR GKGIISAIEF GPV V+PVLEE Sbjct: 241 WNVLGDPGNHFYADPFPVTWRGRTFVFFEDLDHRVGKGIISAIEFGDTGPVRDVMPVLEE 300 Query: 299 PWHLSYPFLIENNGELWMIPESTAHRDVPIYKCVRFPDKWERQGTLLAGLELADATITRH 358 PWHLSYPFLIE++GELWMIPES+ + DV +YKCVRFPD+WER TLL+GLELADATITRH Sbjct: 301 PWHLSYPFLIEDDGELWMIPESSINGDVALYKCVRFPDQWERHATLLSGLELADATITRH 360 Query: 359 DGLYYMFGAWRDGTGGYSDTLAIYYAEQLFGPWRPHASNPILMDRATTRPAGNFVTIN 416 +GL Y+FGAWRDG GGYSD+LAIYYA+ L GPW PHASNP+L+DRA+TRPAGNFVTIN Sbjct: 361 NGLNYLFGAWRDGAGGYSDSLAIYYADHLLGPWLPHASNPVLIDRASTRPAGNFVTIN 418 >ref|YP_568248.1| hypothetical protein RPD_1109 [Rhodopseudomonas palustris BisB5] gb|ABE38347.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5] Length = 506 Score = 482 bits (1241), Expect = e-134, Method: Compositional matrix adjust. Identities = 239/422 (56%), Positives = 298/422 (70%), Gaps = 9/422 (2%) Query: 1 MIIEFRCDRAQARLWMRREMLRVSDQDIPVQIAWTTTPGPRLAGLDMLFELERIVLRKGK 60 MI+E R D A+ R WMR +M + +Q+AW T R GL+ L +LER+V+R+G+ Sbjct: 1 MIVELRFDEARPRRWMRHQMSLLCSDPNRLQVAWVRTDATRPTGLEQLLDLERMVMRRGR 60 Query: 61 AGDADRLKTIAERPRM--GNPDVVVDFTTAERDPNCSPRLYLRPRFNGQVGEVAALAAIL 118 AD + R D+VVDFT RDP + +LYLRP +NG GE AALAAIL Sbjct: 61 PCGADLCSELLREGRQPSQTADIVVDFTAMPRDPKRAAQLYLRPLYNGAAGEDAALAAIL 120 Query: 119 AGDLPVIEIVNELDGTVMDRGHPSAEIAAGLSGGLETVMARTLSMLPPILSGAPRLVPQL 178 GDLP+IEI +E+ G +M G PSAE A GL G L+TVMART+++L +L PR Sbjct: 121 GGDLPLIEIYDEISGAMMWSGQPSAETAEGLGGALDTVMARTVTLLKGVLDSGPRP---- 176 Query: 179 AVPAAGSAP---RNPVPFVLRGVATSIAKEIYRLCCYAPHWHVGWRYADNADVWRTGDLS 235 A AA P ++P +VLRG+A + + IYRLCCY+PHW +GWRY D+A +W +GDLS Sbjct: 177 ATAAASVRPACVQSPSAYVLRGIAEHLVRRIYRLCCYSPHWRIGWRYTDDAGIWSSGDLS 236 Query: 236 GPAWNVLGDPGNHFYADPVPVKWQGRTFVFFEDLDHRTGKGIISAIEFDGNGPVGTVLPV 295 GP W + PGN FYADP P+ W+GRTF FFEDLDHR GKG ISAIEF +GPVG +PV Sbjct: 237 GPGWRAVPSPGNRFYADPFPITWKGRTFAFFEDLDHRVGKGTISAIEFGHDGPVGEAIPV 296 Query: 296 LEEPWHLSYPFLIENNGELWMIPESTAHRDVPIYKCVRFPDKWERQGTLLAGLELADATI 355 LEEPWHLSYPFLI + +LWMIPES+ +V +YKCV+FP++WE+ TLL+G+E ADATI Sbjct: 297 LEEPWHLSYPFLIAQDNDLWMIPESSVSGEVTLYKCVQFPNRWEKHATLLSGVEFADATI 356 Query: 356 TRHDGLYYMFGAWRDGTGGYSDTLAIYYAEQLFGPWRPHASNPILMDRATTRPAGNFVTI 415 +HDGLYYMFGA RDGTGGYSDTL+IYYA LFGPW PHA P+L+DRA+ RPAG+FV Sbjct: 357 VQHDGLYYMFGATRDGTGGYSDTLSIYYANSLFGPWMPHAQRPVLVDRASARPAGHFVQR 416 Query: 416 NG 417 NG Sbjct: 417 NG 418 >ref|YP_484627.1| hypothetical protein RPB_1006 [Rhodopseudomonas palustris HaA2] gb|ABD05716.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2] Length = 506 Score = 476 bits (1225), Expect = e-132, Method: Compositional matrix adjust. Identities = 232/420 (55%), Positives = 297/420 (70%), Gaps = 5/420 (1%) Query: 1 MIIEFRCDRAQARLWMRREMLRVSDQDIPVQIAWTTTPGPRLAGLDMLFELERIVLRKGK 60 MI+E R D + R W+R + ++ VQI T R AGL+ L E+ER++LR+G+ Sbjct: 1 MIVELRVDAQRPRRWLRHLIALLAADRHEVQIVPVRTDASRPAGLEALLEIERMLLRRGR 60 Query: 61 AGDADRLKTIAERPRM--GNPDVVVDFTTAERDPNCSPRLYLRPRFNGQVGEVAALAAIL 118 AD + PR D+V+DFT RDP C+ RLYLRP + G GE AALAAIL Sbjct: 61 PCGADADPALTNEPRRPPQRADIVIDFTAMPRDPTCAARLYLRPLYEGVAGEDAALAAIL 120 Query: 119 AGDLPVIEIVNELDGTVMDRGHPSAEIAAGLSGGLETVMARTLSMLPPILSGAPR-LVPQ 177 DLP+IEI++E+ G++ G PSAE A GL G L+ VMART ++L ++ PR P+ Sbjct: 121 GDDLPLIEILDEVSGSIAWSGKPSAETADGLGGALDAVMARTATLLKGVIDAGPRATAPR 180 Query: 178 LAVPAAGSAPRNPVPFVLRGVATSIAKEIYRLCCYAPHWHVGWRYADNADVWRTGDLSGP 237 +V + R P +VLRG+A + + IYRLCCY+PHW +GWR+ D+A +W + DLSGP Sbjct: 181 GSV--RRRSLRTPSAYVLRGLAAHLVRSIYRLCCYSPHWRIGWRHTDDAGIWNSADLSGP 238 Query: 238 AWNVLGDPGNHFYADPVPVKWQGRTFVFFEDLDHRTGKGIISAIEFDGNGPVGTVLPVLE 297 AW + PG+ FYADP P+ W+GRTFVF EDLDHR GKG I+AIEF +GP+GT +PVLE Sbjct: 239 AWRAVPSPGHRFYADPFPITWKGRTFVFVEDLDHRVGKGTIAAIEFGDDGPIGTAIPVLE 298 Query: 298 EPWHLSYPFLIENNGELWMIPESTAHRDVPIYKCVRFPDKWERQGTLLAGLELADATITR 357 EPWHLSYPFLI ++ ELWMIPES+A +V +Y+CVRFPD+WER TLL+G+ELADATI R Sbjct: 299 EPWHLSYPFLIVHDDELWMIPESSARHEVNVYRCVRFPDRWERHATLLSGVELADATIVR 358 Query: 358 HDGLYYMFGAWRDGTGGYSDTLAIYYAEQLFGPWRPHASNPILMDRATTRPAGNFVTING 417 HDG +YMFGA RDG GGYSDTL+IY+A+ LFG W PHA P L+DRA+TRPAG+FV NG Sbjct: 359 HDGRHYMFGATRDGAGGYSDTLSIYHADDLFGRWTPHAQRPALVDRASTRPAGHFVQRNG 418 >ref|YP_001994031.1| hypothetical protein Rpal_5067 [Rhodopseudomonas palustris TIE-1] gb|ACF03556.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1] Length = 509 Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust. Identities = 238/421 (56%), Positives = 292/421 (69%), Gaps = 4/421 (0%) Query: 1 MIIEFRCDRAQARLWMRREMLRVSDQDIPVQIAWTTTPGPRLAGLDMLFELERIVLRKGK 60 MI+E R D+ + R+WMR + ++ +Q++W +T R AGLD L +LER++LR+G+ Sbjct: 1 MIVELRFDQQRPRMWMRHLLDLLAGPGRTLQVSWISTSAERPAGLDALLDLERMLLRRGQ 60 Query: 61 --AGDADRLKTIAERPRMGNPDVVVDFTTAERDPNCSPRLYLRPRFNGQVGEVAALAAIL 118 GD + R G D+V+DFTTA R+ +C RLYLRP+F+G+ GE AALAAIL Sbjct: 61 RCGGDPEPALLETSRASYGQADLVIDFTTAPREADCPARLYLRPQFDGRAGEDAALAAIL 120 Query: 119 AGDLPVIEIVNELDGTVMDRGHPSAEIAAGLSGGLETVMARTLSMLPPILSGAPRLVPQL 178 GDLPVIEI +E+ G VM G PS E A+GL G L MART ++L IL PR Sbjct: 121 GGDLPVIEIRDEVSGAVMWSGKPSGENASGLGGALGATMARTGTLLRGILESGPRAQGIR 180 Query: 179 AVPAAGSAPRNPVPFVLRGVATSIAKEIYRLCCYAPHWHVGWRYADNADVWRTGDLSGPA 238 A + FV R +A SIAK IYRLCCYAPHW +GWRY D+A +W +GDLSGP Sbjct: 181 RDGAHLGHAHSAAGFVARNLAISIAKAIYRLCCYAPHWRIGWRYTDDAGIWNSGDLSGPD 240 Query: 239 WNVLGDPGNHFYADPVPVKWQGRTFVFFEDLDHRTGKGIISAIEFDGNGPVGTVLPVLEE 298 W L P N FYADP V W+GRTFVFFEDLDHR GKG ISA+EF GPVG +PVLEE Sbjct: 241 WRALPSPANRFYADPFAVTWKGRTFVFFEDLDHRVGKGTISAVEFGDAGPVGEAVPVLEE 300 Query: 299 PWHLSYPFLIENNGELWMIPESTAHRDVPIYKCVRFPDKWERQGTLLAGLELADATITRH 358 PWHLSYPFLI + ELWMIPES+ +DV IY+CV FP +WER TLL+G+ELADATI +H Sbjct: 301 PWHLSYPFLIVQDDELWMIPESSLQKDVSIYRCVEFPGRWERHATLLSGVELADATILQH 360 Query: 359 DGLYYMFGAWR--DGTGGYSDTLAIYYAEQLFGPWRPHASNPILMDRATTRPAGNFVTIN 416 +G +Y+FGA R D GGYSDTL+IY A+ LFGPWRPHA P L+DRA+ RPAG+FV N Sbjct: 361 EGRHYLFGATRDDDSDGGYSDTLSIYVADDLFGPWRPHAMQPALVDRASARPAGHFVRRN 420 Query: 417 G 417 G Sbjct: 421 G 421 >ref|YP_004111051.1| hypothetical protein Rpdx1_4772 [Rhodopseudomonas palustris DX-1] gb|ADU46318.1| hypothetical protein Rpdx1_4772 [Rhodopseudomonas palustris DX-1] Length = 509 Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust. Identities = 237/422 (56%), Positives = 290/422 (68%), Gaps = 6/422 (1%) Query: 1 MIIEFRCDRAQARLWMRREMLRVSDQDIPVQIAWTTTPGPRLAGLDMLFELERIVLRKGK 60 MI+E R DR + R WMR + ++ Q QI+W T R GL+ L +LER++LR+G+ Sbjct: 1 MIVELRFDRQRPRSWMRHLIDLLTSQARTTQISWIATGAERPPGLEALLDLERMLLRRGR 60 Query: 61 AGDADRLKTIAERPRM--GNPDVVVDFTTAERDPNCSPRLYLRPRFNGQVGEVAALAAIL 118 DR + + P G PD+V+DFT R+P C RLYLRP F+GQ GE AA AAIL Sbjct: 61 RCGGDRDPALLQAPNAAHGRPDIVIDFTAVAREPECPARLYLRPLFDGQAGEDAAFAAIL 120 Query: 119 AGDLPVIEIVNELDGTVMDRGHPSAEIAAGLSGGLETVMARTLSMLPPIL-SGAPRLVPQ 177 AGDLPVIEI +E+ GTVM G PS E A GL G L MART +++ +L SGA L + Sbjct: 121 AGDLPVIEIYDEISGTVMWSGQPSGENAQGLGGALGATMARTATLMKGVLESGARPLTIR 180 Query: 178 LAVPAAGSAPRNPVPFVLRGVATSIAKEIYRLCCYAPHWHVGWRYADNADVWRTGDLSGP 237 G A P FV R +A S+AK IYR+CCYAPHW +GWR+ D+A +W + DLSGP Sbjct: 181 RDGGHLGHAHSAP-GFVARNLALSVAKAIYRMCCYAPHWRIGWRHTDDAGIWGSADLSGP 239 Query: 238 AWNVLGDPGNHFYADPVPVKWQGRTFVFFEDLDHRTGKGIISAIEFDGNGPVGTVLPVLE 297 W + P N FYADP V W+GRT VFFE+LDHR GKG ISAIEF +GP+G +PVLE Sbjct: 240 DWQAIPSPANRFYADPFAVTWKGRTCVFFEELDHRVGKGTISAIEFGESGPIGGAIPVLE 299 Query: 298 EPWHLSYPFLIENNGELWMIPESTAHRDVPIYKCVRFPDKWERQGTLLAGLELADATITR 357 EPWHLSYPFLI + ELWMIPES+ RDV IY+CV FP +WER TLL+G+ELADATI + Sbjct: 300 EPWHLSYPFLIAHGDELWMIPESSVQRDVSIYRCVAFPGRWERHATLLSGVELADATIVQ 359 Query: 358 HDGLYYMFGAWRDG--TGGYSDTLAIYYAEQLFGPWRPHASNPILMDRATTRPAGNFVTI 415 HDG +Y+FGA RD GGYSDTL+IY A+ LFGPWRPHA P L+DRA+ RPAG+FV Sbjct: 360 HDGRHYLFGATRDDDRDGGYSDTLSIYLADDLFGPWRPHAIRPALVDRASARPAGHFVRQ 419 Query: 416 NG 417 G Sbjct: 420 GG 421