BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0188.0007.p         (133 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_773699.1| hypothetical protein bll7059 [Bradyrhizobium ja...   207   6e-52
ref|YP_571020.1| hypothetical protein RPD_3898 [Rhodopseudomonas...   195   2e-48
ref|YP_484945.1| hypothetical protein RPB_1324 [Rhodopseudomonas...   195   2e-48
ref|YP_001993745.1| hypothetical protein Rpal_4779 [Rhodopseudom...   173   9e-42
ref|YP_004110798.1| hypothetical protein Rpdx1_4515 [Rhodopseudo...   162   1e-38

>ref|NP_773699.1| hypothetical protein bll7059 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC52324.1| bll7059 [Bradyrhizobium japonicum USDA 110]
          Length = 135

 Score =  207 bits (526), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 97/132 (73%), Positives = 110/132 (83%)

Query: 1   MGVDLLNVKGLNELDREAPVVMVNLMRFRARSLDGDGSGWDAYLRYSALTVPMIKARGGT 60
           + V++LN+KGL  LDR APVVM+NLMRF ARS DGDGSGWDAYLRYSA+TVPMIKARGGT
Sbjct: 3   LAVNMLNIKGLEGLDRHAPVVMLNLMRFHARSRDGDGSGWDAYLRYSAITVPMIKARGGT 62

Query: 61  LLWTGSAETVALGEPAGQRWDYLALVYYPSVAAFIDMMTSADYEGRCDPQRRNGCEEHVI 120
           LLWTG A+ VALG   G  WD++ALV+YP+VAAF+DMMTS  YE   DP R NGC EHVI
Sbjct: 63  LLWTGEAKAVALGPQPGNDWDFVALVHYPTVAAFLDMMTSEAYEREADPHRVNGCAEHVI 122

Query: 121 IATREAYSKFKV 132
           IAT EAYSKFK+
Sbjct: 123 IATSEAYSKFKM 134


>ref|YP_571020.1| hypothetical protein RPD_3898 [Rhodopseudomonas palustris BisB5]
 gb|ABE41119.1| hypothetical protein RPD_3898 [Rhodopseudomonas palustris BisB5]
          Length = 144

 Score =  195 bits (496), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 91/134 (67%), Positives = 107/134 (79%), Gaps = 2/134 (1%)

Query: 1   MGVDLLNVKGLNELDRE--APVVMVNLMRFRARSLDGDGSGWDAYLRYSALTVPMIKARG 58
           MG++ LN++GL EL+RE   PVVMVNLMRF     DGD SGWDAYLRYS LTVPMIKARG
Sbjct: 1   MGIEHLNIEGLKELEREDRGPVVMVNLMRFNESGGDGDASGWDAYLRYSTLTVPMIKARG 60

Query: 59  GTLLWTGSAETVALGEPAGQRWDYLALVYYPSVAAFIDMMTSADYEGRCDPQRRNGCEEH 118
           GTLLWTG+A+ +ALG   G+ WDYLALVYYPS+ AF+DMM SA+YE  CDP RR  C +H
Sbjct: 61  GTLLWTGTAKAIALGRDDGRHWDYLALVYYPSIEAFLDMMNSAEYELECDPHRRAACADH 120

Query: 119 VIIATREAYSKFKV 132
           +II TRE+YSKF +
Sbjct: 121 LIICTRESYSKFGI 134


>ref|YP_484945.1| hypothetical protein RPB_1324 [Rhodopseudomonas palustris HaA2]
 gb|ABD06034.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2]
          Length = 142

 Score =  195 bits (495), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 90/134 (67%), Positives = 108/134 (80%), Gaps = 2/134 (1%)

Query: 1   MGVDLLNVKGLNELDRE--APVVMVNLMRFRARSLDGDGSGWDAYLRYSALTVPMIKARG 58
           MG++ LN++GL ELDRE   PVVMVNLMRF   + DG GSGWDAYLRYS LTVPMIKARG
Sbjct: 1   MGIEQLNIEGLKELDREDRGPVVMVNLMRFNESAPDGSGSGWDAYLRYSVLTVPMIKARG 60

Query: 59  GTLLWTGSAETVALGEPAGQRWDYLALVYYPSVAAFIDMMTSADYEGRCDPQRRNGCEEH 118
           GTLLWTG+A+ VA G   G+ WDYLALVYYPS+ AF++MM+S +Y+ +CDP RR  C +H
Sbjct: 61  GTLLWTGNAKAVAFGRDDGRHWDYLALVYYPSIDAFLEMMSSPEYQSQCDPHRRAACADH 120

Query: 119 VIIATREAYSKFKV 132
           +II TREAYSKF +
Sbjct: 121 LIICTREAYSKFGI 134


>ref|YP_001993745.1| hypothetical protein Rpal_4779 [Rhodopseudomonas palustris TIE-1]
 gb|ACF03270.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1]
          Length = 137

 Score =  173 bits (438), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 79/134 (58%), Positives = 101/134 (75%), Gaps = 2/134 (1%)

Query: 1   MGVDLLNVKGLNELDRE--APVVMVNLMRFRARSLDGDGSGWDAYLRYSALTVPMIKARG 58
           M +D LN++GL  LDR+   PVVMVNL+RF  +S+DGDG+GWDAYLRYSA  V +IK  G
Sbjct: 1   MSIDELNIEGLTALDRDDPGPVVMVNLLRFNEQSVDGDGTGWDAYLRYSAQKVALIKEHG 60

Query: 59  GTLLWTGSAETVALGEPAGQRWDYLALVYYPSVAAFIDMMTSADYEGRCDPQRRNGCEEH 118
           G LLW G+A+ +ALG      WDY++LVYYP+VAAFI MM S +Y  +C+P RRN C +H
Sbjct: 61  GMLLWNGNAKGIALGRSEHAPWDYVSLVYYPTVAAFIAMMRSPEYLSQCEPHRRNACADH 120

Query: 119 VIIATREAYSKFKV 132
           +II TREA+SKF +
Sbjct: 121 LIICTREAFSKFHI 134


>ref|YP_004110798.1| hypothetical protein Rpdx1_4515 [Rhodopseudomonas palustris DX-1]
 gb|ADU46065.1| hypothetical protein Rpdx1_4515 [Rhodopseudomonas palustris DX-1]
          Length = 137

 Score =  162 bits (411), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 75/134 (55%), Positives = 98/134 (73%), Gaps = 2/134 (1%)

Query: 1   MGVDLLNVKGLNELDRE--APVVMVNLMRFRARSLDGDGSGWDAYLRYSALTVPMIKARG 58
           M +D LN++GL  L+R+   PVVMVNLMR   +S DG+G+GWDAYLRYS+  V +IK  G
Sbjct: 1   MKIDELNIEGLTALERDDPGPVVMVNLMRVHEQSADGEGTGWDAYLRYSSQKVALIKTHG 60

Query: 59  GTLLWTGSAETVALGEPAGQRWDYLALVYYPSVAAFIDMMTSADYEGRCDPQRRNGCEEH 118
           G LLW G+A+ +ALG      WDY++LVYYPSV AF+ MM S DY  +C+P RRN C +H
Sbjct: 61  GMLLWNGNAKGLALGGGDRAAWDYVSLVYYPSVEAFVTMMQSPDYLSQCEPHRRNACADH 120

Query: 119 VIIATREAYSKFKV 132
           +II TREA+S+F +
Sbjct: 121 LIICTREAFSRFHI 134