BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0187.0027.p (436 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773119.1| ABC transporter substrate-binding protein [Brad... 758 0.0 ref|ZP_02186978.1| ABC transporter ATP-binding protein [alpha pr... 457 e-126 ref|NP_773087.1| ABC transporter ATP-binding protein [Bradyrhizo... 393 e-107 ref|YP_785016.1| branched-chain amino acid ABC transporter perip... 177 3e-42 ref|ZP_01000631.1| hypothetical branched-chain amino acid ABC tr... 166 8e-39 >ref|NP_773119.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC51744.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum USDA 110] Length = 436 Score = 758 bits (1956), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/433 (82%), Positives = 400/433 (92%) Query: 1 MPVRRAARWLAGLSVALAALGVANAAHAQDKKIRIGVIFDLTGPLAGGGSELQYTGVKIM 60 M +R AAR + GL VA+AA G+A +A AQ+KKI+IGV++DLTGPLAGGGSEL Y G KI+ Sbjct: 1 MRLRMAARLVRGLLVAIAATGLAVSAQAQEKKIKIGVVYDLTGPLAGGGSELNYVGAKII 60 Query: 61 LDHYAKTGVEGYKVEAVYADAQSKPDIAINEAVRLLEQEKVDMVMGFFSSAQCVPVSARV 120 LDH+A+TGVEGYK+EAVYADAQSKPD+AINE+VRLLEQEKVDMV+GFFSSAQCVPV+ARV Sbjct: 61 LDHFARTGVEGYKIEAVYADAQSKPDVAINESVRLLEQEKVDMVLGFFSSAQCVPVAARV 120 Query: 121 EQMKKFMWITTCISSGVFDGKNYKYVFRPQAAGNQYGMMTTDFIAQYSMSKFGKEPKDLR 180 EQ+KKFMW+TTCISS VF+ K YKYVFRPQA+G+Q+GMMT DFIAQ + +KF KEPKDLR Sbjct: 121 EQLKKFMWMTTCISSAVFNEKGYKYVFRPQASGDQFGMMTMDFIAQNAKAKFDKEPKDLR 180 Query: 181 VAIIHEDGAYGVDVSKGNEAGAKKAGFNIVLKEGYSATAPDLSALVTKLKRAKPDVIFHT 240 VAIIHEDGAYGVDVS+GNEAGAKKAGFN+V+KEGYSATAPDLSALVTKLKRAKPDVIFHT Sbjct: 181 VAIIHEDGAYGVDVSRGNEAGAKKAGFNVVMKEGYSATAPDLSALVTKLKRAKPDVIFHT 240 Query: 241 GYNPDITLLFRQAREQGLKFGAIVGHGAGYGVYEKLKEGLGADANYLFNTDPISIWLANQ 300 GYNPDITLL RQAREQGLKFGA++GHGAGYGVYEKLKEG+GADA Y+FNTDPISIWLANQ Sbjct: 241 GYNPDITLLLRQAREQGLKFGALMGHGAGYGVYEKLKEGMGADATYIFNTDPISIWLANQ 300 Query: 301 KNMDPKLPPVIKMVGEEFDRLKPGVPIRSAHVGIGPANAYVFLDDVLPRAIKKYGGVDPD 360 K MDPKLPPVIKMVGEEFD+++PGV IRSAHVGIG +N YVF+ DVLPRAIKKYGGVDPD Sbjct: 301 KTMDPKLPPVIKMVGEEFDKIRPGVAIRSAHVGIGASNTYVFMSDVLPRAIKKYGGVDPD 360 Query: 361 ALRKAALDTDIPEGGTMLGYGVKFYGEGEQYAGQNARSFPVVLQYIDDKSYVVWPKSQMQ 420 ALRKAALDTDIPEGGTMLG+GVKFYGEG AGQN RSFPVV+QY++DKS+VVWPKSQ Q Sbjct: 361 ALRKAALDTDIPEGGTMLGFGVKFYGEGTPMAGQNERSFPVVIQYLEDKSHVVWPKSQAQ 420 Query: 421 RETELPLPAGTTY 433 RE LPLP GTTY Sbjct: 421 REAVLPLPKGTTY 433 >ref|ZP_02186978.1| ABC transporter ATP-binding protein [alpha proteobacterium BAL199] gb|EDP66160.1| ABC transporter ATP-binding protein [alpha proteobacterium BAL199] Length = 435 Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust. Identities = 228/432 (52%), Positives = 299/432 (69%), Gaps = 6/432 (1%) Query: 3 VRRAARWLAGLSVALAALGVANAAHAQDKKIRIGVIFDLTGPLAGGGSELQYTGVKIMLD 62 VRRAA + G + L A AA IRIGVI+D TGP A GGS+ G +I +D Sbjct: 7 VRRAAWGMLGAAAVALPLTAAQAA----DPIRIGVIYDFTGPFAAGGSQAAAIGNQIAID 62 Query: 63 HY-AKTGVEGYKVEAVYADAQSKPDIAINEAVRLLEQEKVDMVMGFFSSAQCVPVSARVE 121 K GVEG+K+EA+ ADAQSK ++AINE RLL+QEKVD++MG +SSA CVP++ +++ Sbjct: 63 MINEKGGVEGHKIEAITADAQSKAEVAINETSRLLDQEKVDLIMGVYSSAHCVPMAQKID 122 Query: 122 QMKKFMWITTCISSGVFDGKNYKYVFRPQAAGNQYGMMTTDFIAQYSMSKFGKEPKDLRV 181 KKFMW C +S VF GKN YVFR Q +Q+G + F+ +Y+ K G +P DL+V Sbjct: 123 AQKKFMWANVCTASAVFKGKNLSYVFRGQVHTDQFGWASCTFLNEYAEKKLGIKPADLKV 182 Query: 182 AIIHEDGAYGVDVSKGNEAGAKKAGFNIVLKEGYSATAPDLSALVTKLKRAKPDVIFHTG 241 AIIHEDG YG V+ GNE KK G +VLKEGY+ATAPDLS+LVTKL+RA+PDVI HTG Sbjct: 183 AIIHEDGPYGAGVAAGNEETCKKNGMTVVLKEGYAATAPDLSSLVTKLRRARPDVILHTG 242 Query: 242 YNPDITLLFRQAREQGLKFGAIVGHGAGYGVYEKLKEGLGADANYLFNTDPISIWLANQK 301 YNPDITL RQ++EQGLK+ A++GHGAGYG +KLK+ G DA+Y++N DP++ L + K Sbjct: 243 YNPDITLFLRQSKEQGLKWAALIGHGAGYGQIDKLKDTFGKDADYIYNVDPVAAQLLDPK 302 Query: 302 NMDPKLPPVIKMVGEEFDRLKPGVPIRSAHVGIGPANAYVFLDDVLPRAIKKYGGVDPDA 361 + P L + + + + + + G H +G A+VF DVLPRAIK YGG DP+A Sbjct: 303 TLAPGLGDLTNEMIKRY-KAQTGADQVPPHTSMGFNQAWVFFTDVLPRAIKTYGGYDPEA 361 Query: 362 LRKAALDTDIPEGGTMLGYGVKFYGEGEQYAGQNARSFPVVLQYIDDKSYVVWPKSQMQR 421 LRKAALDTDIP GGT+ GYGVKF G+ AGQN+RS PVV+QY++ ++ +VWP + Sbjct: 362 LRKAALDTDIPVGGTIQGYGVKFNPPGDVMAGQNSRSSPVVMQYVNGETKIVWPTAIQTM 421 Query: 422 ETELPLPAGTTY 433 + LPLP+G +Y Sbjct: 422 DPVLPLPSGHSY 433 >ref|NP_773087.1| ABC transporter ATP-binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC51712.1| ABC transporter ATP-binding protein [Bradyrhizobium japonicum USDA 110] Length = 436 Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust. Identities = 199/410 (48%), Positives = 270/410 (65%), Gaps = 3/410 (0%) Query: 26 AHAQDKKIRIGVIFDLTGPLAGGGSELQYTGVKIMLDHYAKTGVEG--YKVEAVYADAQS 83 A AQ + +RIG+I+DLTGP A GGS G +I +D + G G K+ V AD+QS Sbjct: 26 AQAQAETLRIGLIYDLTGPFAAGGSVASSIGAQIAIDLVNEKGGIGGKTKIAPVAADSQS 85 Query: 84 KPDIAINEAVRLLEQEKVDMVMGFFSSAQCVPVSARVEQMKKFMWITTCISSGVFDGKNY 143 KPD+AINEA RL+ QEK+D++ G ++S+ VP++A+VEQ KK +WITT +S+ VF KN Sbjct: 86 KPDVAINEAERLISQEKIDIINGVYASSHAVPLAAKVEQQKKILWITTAVSTAVFKDKNL 145 Query: 144 KYVFRPQAAGNQYGMMTTDFIAQYSMSKFGKEPKDLRVAIIHEDGAYGVDVSKGNEAGAK 203 +YVFR Q +QYG F+A+++ +K G +PK+++VA+IHEDG YGV V+ +EA AK Sbjct: 146 QYVFRAQIHSDQYGQAFAGFLAEHAKAKLGMDPKEVKVALIHEDGPYGVGVAAADEAYAK 205 Query: 204 KAGFNIVLKEGYSATAPDLSALVTKLKRAKPDVIFHTGYNPDITLLFRQAREQGLKFGAI 263 +AG +VL+EGYSA+APDLS LVTK+KRAK DVI H GYNPDITL RQARE GL+F + Sbjct: 206 EAGIQVVLREGYSASAPDLSVLVTKIKRAKADVISHAGYNPDITLFLRQARESGLRFKML 265 Query: 264 VGHGAGYGVYEKLKEGLGADANYLFNTDPISIWLANQKNMDPKLPPVIKMVGEEFDRLKP 323 G GAGY +KL+ G D + N DP+ L + + P + + + + + K Sbjct: 266 FGAGAGYSQLDKLRSTFGPDIDNFCNIDPVPAQLLDPAKLAPGIGDLTNAMVTRY-KAKT 324 Query: 324 GVPIRSAHVGIGPANAYVFLDDVLPRAIKKYGGVDPDALRKAALDTDIPEGGTMLGYGVK 383 G H +G +V L++VLP A +KYG +P+A+RKAALD DIP GGT+ GYGVK Sbjct: 325 GATDVPPHCSMGFNQTWVLLNNVLPVAKEKYGSFEPEAIRKAALDVDIPAGGTIQGYGVK 384 Query: 384 FYGEGEQYAGQNARSFPVVLQYIDDKSYVVWPKSQMQRETELPLPAGTTY 433 F+ G AGQN RS PVV+Q + VVWP + ++ PLP G+TY Sbjct: 385 FFPPGTPLAGQNERSTPVVMQNAGEHISVVWPTNIRTQDPVFPLPKGSTY 434 >ref|YP_785016.1| branched-chain amino acid ABC transporter periplasmic binding protein [Bordetella avium 197N] emb|CAJ48088.1| putative branched-chain amino acid ABC transporter, periplasmic binding protein [Bordetella avium 197N] Length = 404 Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 142/413 (34%), Positives = 204/413 (49%), Gaps = 26/413 (6%) Query: 6 AARWLAGLSVALAALGVANAAHAQDKKIRIGVIFDLTGPLAGGGSELQYTGVKIMLDHY- 64 AR LAG+SVAL G+ A D+ I++G +F +G LA G E Y G+++ ++ Sbjct: 7 CARLLAGMSVAL---GLTATTLAADE-IKMGALFPFSGGLAQLGDE-SYRGLQMAIEERN 61 Query: 65 AKTGVEGYKVEAVYADAQSKPDIAINEAVRLLEQEKVDMVMGFFSSAQCVPVSARVEQMK 124 AK G+ G ++ V ADA + A+ EA RL E V V G FSSA + E Sbjct: 62 AKGGLLGKQIVLVKADA-VDANQAVGEARRLTSVENVAAVFGSFSSALSFAATQVTELAG 120 Query: 125 KFMWITTCISSGVFDGKNYKYVFRPQAAGNQYGMMTTDFIAQYSMSKFGKEPKDLRVAII 184 +S V D + +KYVFR + + T + + +PK LR+AII Sbjct: 121 VPFLELGAVSDSVTD-RGFKYVFRSNSTARDFANGTIEGVVDVIGPALKTDPKALRLAII 179 Query: 185 HEDGAYGVDVSKGNEAGAKKAGFNIVLKEGYSATAPDLSALVTKLKRAKPDVIFHTGYNP 244 HEDG YG ++ + AK G N+V YSA A DLS+L+ +L+ AK DV+ T Y Sbjct: 180 HEDGLYGKTIAGFQQERAKALGLNVVEVLPYSAKAVDLSSLILRLRGAKADVVLQTSYQN 239 Query: 245 DITLLFRQAREQGLKFGAIVGHGAGYGVYEKLKEGLGADANYLFNTDPISIWLANQKNMD 304 D L FRQA+ G K A++G G GY + + K LG + + F+ D + N+K Sbjct: 240 DTMLYFRQAKSAGFKPRAVIGAGGGYSLSDTAK-ALGGEMDGAFDVD-FPQFAMNEKGA- 296 Query: 305 PKLPPVIKMVGEEFDRLKPGVPIRSAHVGIGPANAYVFLDDVLPRAIKKYGGVDPDALRK 364 P L + + + F+ +P RS H + A FLD AI++ G +D D +R Sbjct: 297 PGLSDFVTVYKKRFNS-EP----RSGHSLVNYVGAKAFLD-----AIEQAGSLDKDKVRA 346 Query: 365 AALDTDIPEGGTMLGYGVKFYGEGEQYAGQNARSFPVVLQYIDDKSYVVWPKS 417 A L P G G+G F GE GQN + ++Q+ D K VWPK+ Sbjct: 347 AVLAYKQPVGSNAAGWGFDF---GEN--GQNRAATTTLMQWQDGKLVTVWPKA 394 >ref|ZP_01000631.1| hypothetical branched-chain amino acid ABC transporter, periplasmicamino acid-binding protein [Oceanicola batsensis HTCC2597] gb|EAQ02104.1| hypothetical branched-chain amino acid ABC transporter, periplasmicamino acid-binding protein [Oceanicola batsensis HTCC2597] Length = 425 Score = 166 bits (420), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 126/417 (30%), Positives = 207/417 (49%), Gaps = 18/417 (4%) Query: 14 SVALAALGVANAAHAQDKKIRIGVIFDLTGPLAGGGSELQYTGVKIMLDHYAKTG-VEGY 72 ++ +A+ V A+ A D R+GV+ L+GPLA G++++ G ++ L + G V G Sbjct: 17 ALTMASPWVRRASAAGDAA-RLGVLLPLSGPLASLGNDVRR-GFELALQFVNEDGGVFGQ 74 Query: 73 KVEAVYADAQSKPDIAINEAVRLLEQEKVDMVMGFFSSAQCVPVSARVEQMKKFMWITTC 132 E V D S + A ++A RL+ E+V +VMG ++S+ S +V + K ++ Sbjct: 75 DAELVTVDVPSSTE-ATSQATRLITSERVGVVMGSYASSISFAAS-QVAERNKVVYFEQG 132 Query: 133 ISSGVFDGKNYKYVFRPQAAGNQYGMMTTDFIAQYSMSKFGKEPKDLRVAIIHEDGAYGV 192 + + +K++FR ++ G F + + G D++VA+++ED YG Sbjct: 133 AVADDITSRGFKHLFRFIYPASELGGGAAKFTLDSVLPRIGMSAGDVKVALLYEDSFYGT 192 Query: 193 DVSKGNEAGAKKAGFNIVLKEGYSATAPDLSALVTKLKRAKPDVIFHTGYNPDITLLFRQ 252 V +G +AG NIV YS DLS +V + + +PDV+ Y PD L +RQ Sbjct: 193 AVGEGARKVLTEAGVNIVDDTSYSYKTTDLSPMVQRYVQLQPDVLLVCQYTPDGILFWRQ 252 Query: 253 AREQGLKFGAIVGHGAGYGVYEKLKEGLGADANYLFNTDPISIWLANQKNMDPKLPPVIK 312 ARE GL+ AIVG+G + V + + LG D N + N S+++ + Sbjct: 253 AREAGLEVKAIVGNGGAHNVGD-FADALGDDVNGVLNAG-TSVYIDKAGLSSEAAETFTR 310 Query: 313 MVGEEFDRLKPGVPIRSAHVGIGPANAYVFLDDVLPRAIKKYGGVDPDALRKAALDTDIP 372 GE R + P SAH G+G + L D+LP A GG+ +A+R+AA+ D P Sbjct: 311 FHGEHAARFEGRQP--SAHTGMGFNAMWTVLRDILPEA----GGMSSEAIREAAMALDKP 364 Query: 373 EGGTMLGYGVKFYGEGEQYAGQNARSFPVVLQYIDDKSYVVWPKSQMQRETE-LPLP 428 G +++G+G KF E + N R+FP Q+ + + V P + + +PLP Sbjct: 365 IGSSIVGWGTKFDPETQ----NNTRAFPTYDQWQSRQIHTVSPSDLAIADIKGMPLP 417