BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0187.0018.p (291 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773127.1| ABC transporter permease protein [Bradyrhizobiu... 427 e-117 ref|YP_001241900.1| ABC transporter permease [Bradyrhizobium sp.... 415 e-114 gb|AAN40987.1| TauC protein [Bradyrhizobium japonicum] 406 e-111 ref|YP_001207439.1| ABC transporter permease [Bradyrhizobium sp.... 405 e-111 ref|NP_947387.1| putative ABC transporter permease [Rhodopseudom... 394 e-108 >ref|NP_773127.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] dbj|BAC51752.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] Length = 262 Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust. Identities = 231/261 (88%), Positives = 244/261 (93%), Gaps = 3/261 (1%) Query: 1 MSRVTLLSLQVLVAVVTLVLWQLFSTVPVFGKVLLPPFFFSNPVDVFSQIVKWFSTGVIW 60 MSR TLL+LQVLVAVV +VLWQ+ STVPVFGK++LPPFFFSNP DVFSQIVKWF++GVIW Sbjct: 1 MSRPTLLALQVLVAVVCIVLWQVLSTVPVFGKIVLPPFFFSNPFDVFSQIVKWFASGVIW 60 Query: 61 KHLAITLWESILAFVIGSAGGILVGFWFARQPRVAAVFDPYVKMVNALPRVVLAPIFALW 120 KHL ITL ESILAFVIGS GG+L+GFWFARQP VAAVFDPYVKMVNALPRVVLAPIFALW Sbjct: 61 KHLGITLAESILAFVIGSLGGVLIGFWFARQPLVAAVFDPYVKMVNALPRVVLAPIFALW 120 Query: 121 FGLGVWSKVALGVTLVFFIVFFNVYQGVKEVPTTVLDNGRMLGMNERQLMRHVYWPSALS 180 GLG+WSKVALGVTLVFFIVFFNVYQGVKEV TVLDNGRMLGM+ERQLM+HVYWPSALS Sbjct: 121 LGLGIWSKVALGVTLVFFIVFFNVYQGVKEVSRTVLDNGRMLGMSERQLMQHVYWPSALS 180 Query: 181 WMFSSLHTSVGFAVVGAVVGEYLGSAAGLGYLIQQAEGVFDVAGVFAGMFVLSAFVILID 240 WMFSSLHTSVGFAVVGAVVGEYLGSAAGLGYLIQQAEGVFDVAGVFAGMFVLSAFVILID Sbjct: 181 WMFSSLHTSVGFAVVGAVVGEYLGSAAGLGYLIQQAEGVFDVAGVFAGMFVLSAFVILID 240 Query: 241 MGVTMVENRLLVW---AADGR 258 GVT+VE RLLVW A DGR Sbjct: 241 FGVTLVERRLLVWRPTALDGR 261 >ref|YP_001241900.1| ABC transporter permease [Bradyrhizobium sp. BTAi1] gb|ABQ37994.1| Putative ABC transporter (permease protein) [Bradyrhizobium sp. BTAi1] Length = 261 Score = 415 bits (1066), Expect = e-114, Method: Compositional matrix adjust. Identities = 226/261 (86%), Positives = 242/261 (92%), Gaps = 3/261 (1%) Query: 1 MSRVTLLSLQVLVAVVTLVLWQLFSTVPVFGKVLLPPFFFSNPVDVFSQIVKWFSTGVIW 60 MSR+ LL+LQ+LVA+V L LWQL +TVPVFG++LLPPFFFSNPVDVF+Q+VKWF++G IW Sbjct: 1 MSRLGLLALQLLVAIVALALWQLLATVPVFGRILLPPFFFSNPVDVFAQVVKWFASGAIW 60 Query: 61 KHLAITLWESILAFVIGSAGGILVGFWFARQPRVAAVFDPYVKMVNALPRVVLAPIFALW 120 KHLAITLWESILAF IGS GG+LVGFWFAR+P VAAVFDPYVKM NALPRVVLAPIF LW Sbjct: 61 KHLAITLWESILAFAIGSLGGVLVGFWFARKPLVAAVFDPYVKMANALPRVVLAPIFTLW 120 Query: 121 FGLGVWSKVALGVTLVFFIVFFNVYQGVKEVPTTVLDNGRMLGMNERQLMRHVYWPSALS 180 GLG+WSKVALGVTLVFFIVFFNVYQGVKEV T V DN RMLGMNERQLMRHVYWPSALS Sbjct: 121 LGLGIWSKVALGVTLVFFIVFFNVYQGVKEVSTVVRDNARMLGMNERQLMRHVYWPSALS 180 Query: 181 WMFSSLHTSVGFAVVGAVVGEYLGSAAGLGYLIQQAEGVFDVAGVFAGMFVLSAFVILID 240 WMFSSLHTSVGFAVVGAVVGEYLGSAAGLGYLIQQAEGVFDVAGVFAGMFVLSAFVILID Sbjct: 181 WMFSSLHTSVGFAVVGAVVGEYLGSAAGLGYLIQQAEGVFDVAGVFAGMFVLSAFVILID 240 Query: 241 MGVTMVENRLLVW---AADGR 258 +GVT+VE RLLVW AADGR Sbjct: 241 IGVTLVERRLLVWRPDAADGR 261 >gb|AAN40987.1| TauC protein [Bradyrhizobium japonicum] Length = 263 Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust. Identities = 212/256 (82%), Positives = 225/256 (87%), Gaps = 3/256 (1%) Query: 6 LLSLQVLVAVVTLVLWQLFSTVPVFGKVLLPPFFFSNPVDVFSQIVKWFSTGVIWKHLAI 65 LL+LQ LVAVV +VLW++ STVP GK+ LPPFFFSNPV S K F++GV WKHL I Sbjct: 7 LLALQSLVAVVCIVLWEVLSTVPCLGKIGLPPFFFSNPVRRASPNRKSFASGVTWKHLGI 66 Query: 66 TLWESILAFVIGSAGGILVGFWFARQPRVAAVFDPYVKMVNALPRVVLAPIFALWFGLGV 125 TL ESILAFVIGS G+L+GFWFARQP VAAVFDPYVKMVNALPRVVLAPIFALW GLG+ Sbjct: 67 TLAESILAFVIGSLSGVLIGFWFARQPLVAAVFDPYVKMVNALPRVVLAPIFALWLGLGI 126 Query: 126 WSKVALGVTLVFFIVFFNVYQGVKEVPTTVLDNGRMLGMNERQLMRHVYWPSALSWMFSS 185 WSKVALGVTLVFFIVFFNVYQGVKEV TVLDNGRMLGM+ERQLM+HVYWPSALSWMFSS Sbjct: 127 WSKVALGVTLVFFIVFFNVYQGVKEVSRTVLDNGRMLGMSERQLMQHVYWPSALSWMFSS 186 Query: 186 LHTSVGFAVVGAVVGEYLGSAAGLGYLIQQAEGVFDVAGVFAGMFVLSAFVILIDMGVTM 245 LHT FAVVGAVVGEYLGSAAGLGYLIQQAEGVFDVAGVFAGMFVLSAFVILID GVT+ Sbjct: 187 LHTVGSFAVVGAVVGEYLGSAAGLGYLIQQAEGVFDVAGVFAGMFVLSAFVILIDFGVTL 246 Query: 246 VENRLLVW---AADGR 258 VE RLLVW A DGR Sbjct: 247 VERRLLVWRPTALDGR 262 >ref|YP_001207439.1| ABC transporter permease [Bradyrhizobium sp. ORS 278] emb|CAL79222.1| Putative ABC transporter (permease protein) [Bradyrhizobium sp. ORS 278] Length = 261 Score = 405 bits (1041), Expect = e-111, Method: Compositional matrix adjust. Identities = 222/261 (85%), Positives = 238/261 (91%), Gaps = 3/261 (1%) Query: 1 MSRVTLLSLQVLVAVVTLVLWQLFSTVPVFGKVLLPPFFFSNPVDVFSQIVKWFSTGVIW 60 MSR+ LL+LQ+LVA+V + LWQL S VPVFG++ LPPFFFSNPVDV +Q+VKWF+TG IW Sbjct: 1 MSRLGLLALQLLVAIVAIALWQLLSNVPVFGRIWLPPFFFSNPVDVAAQVVKWFATGAIW 60 Query: 61 KHLAITLWESILAFVIGSAGGILVGFWFARQPRVAAVFDPYVKMVNALPRVVLAPIFALW 120 KHLAITLWESILAF IGS GG+LVGFWFAR+P VAAVFDPYVKM NALPRVVLAPIF LW Sbjct: 61 KHLAITLWESILAFAIGSLGGVLVGFWFARKPLVAAVFDPYVKMANALPRVVLAPIFTLW 120 Query: 121 FGLGVWSKVALGVTLVFFIVFFNVYQGVKEVPTTVLDNGRMLGMNERQLMRHVYWPSALS 180 GLG+WSKVALGVTLVFFIVFFNVYQGVKEV T V DN RMLGM+ERQLMRHVYWPSALS Sbjct: 121 LGLGIWSKVALGVTLVFFIVFFNVYQGVKEVSTVVRDNARMLGMSERQLMRHVYWPSALS 180 Query: 181 WMFSSLHTSVGFAVVGAVVGEYLGSAAGLGYLIQQAEGVFDVAGVFAGMFVLSAFVILID 240 WMFSSLHTSVGFAVVGAVVGEYLGSAAGLGYLIQQAEGVFDVAGVFAGMFVLSAFVILID Sbjct: 181 WMFSSLHTSVGFAVVGAVVGEYLGSAAGLGYLIQQAEGVFDVAGVFAGMFVLSAFVILID 240 Query: 241 MGVTMVENRLLVW---AADGR 258 + VT+VE RLLVW AADGR Sbjct: 241 ICVTLVERRLLVWRPDAADGR 261 >ref|NP_947387.1| putative ABC transporter permease [Rhodopseudomonas palustris CGA009] emb|CAE27483.1| putative ABC transporter, permease protein [Rhodopseudomonas palustris CGA009] Length = 264 Score = 394 bits (1012), Expect = e-108, Method: Compositional matrix adjust. Identities = 202/253 (79%), Positives = 229/253 (90%) Query: 1 MSRVTLLSLQVLVAVVTLVLWQLFSTVPVFGKVLLPPFFFSNPVDVFSQIVKWFSTGVIW 60 MSRV LL+LQ LVA+V L +WQ+ +TVP+ G++LLPPFFFS PVDV Q++ WF++GVIW Sbjct: 1 MSRVKLLTLQFLVALVALTVWQVLTTVPIAGRLLLPPFFFSTPVDVAKQVIAWFASGVIW 60 Query: 61 KHLAITLWESILAFVIGSAGGILVGFWFARQPRVAAVFDPYVKMVNALPRVVLAPIFALW 120 KHL ITL ES+LAFVIGS G+LVGFWFARQPRVAAVFDPYVKMVNALPRVVLAPIF LW Sbjct: 61 KHLWITLQESLLAFVIGSFAGVLVGFWFARQPRVAAVFDPYVKMVNALPRVVLAPIFTLW 120 Query: 121 FGLGVWSKVALGVTLVFFIVFFNVYQGVKEVPTTVLDNGRMLGMNERQLMRHVYWPSALS 180 GLG+WSKVALGVTLVFF+VFFNVYQGVKE T++DN RMLGM+ERQ+MRHV+WPSALS Sbjct: 121 LGLGIWSKVALGVTLVFFVVFFNVYQGVKETSATLVDNARMLGMSERQMMRHVFWPSALS 180 Query: 181 WMFSSLHTSVGFAVVGAVVGEYLGSAAGLGYLIQQAEGVFDVAGVFAGMFVLSAFVILID 240 WMFSSLHT++GFAVVGAVVGEYLG+AAGLGYLIQQAEG FDVAGVFAGMFVLS FVILID Sbjct: 181 WMFSSLHTAIGFAVVGAVVGEYLGAAAGLGYLIQQAEGTFDVAGVFAGMFVLSVFVILID 240 Query: 241 MGVTMVENRLLVW 253 + V++VE RLLVW Sbjct: 241 LAVSLVERRLLVW 253