BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0187.0015.p (265 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value dbj|BAH70273.1| IclR-type transcriptional regulator [Comamonas s... 201 1e-49 ref|ZP_03542903.1| transcriptional regulator, IclR family [Comam... 196 3e-48 gb|AAX18938.1| isophthalate regulator [Comamonas testosteroni] 194 2e-47 ref|YP_003607133.1| transcriptional regulator, IclR family [Burk... 176 2e-42 ref|NP_887275.1| transcriptional regulator [Bordetella bronchise... 176 3e-42 >dbj|BAH70273.1| IclR-type transcriptional regulator [Comamonas sp. E6] Length = 262 Score = 201 bits (511), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 105/256 (41%), Positives = 157/256 (61%) Query: 8 EVHDAEQGASGVRAVDRAIAILQCFTPDQPAMSVIEIQKRVGLSRPTLYRLLQTLAQRDL 67 ++ ++++ SGVRAV RA+ +L F P + V E+ KRV LSRPTLYRLL TL + Sbjct: 7 DMAESDKSESGVRAVQRALDVLLAFRPGDDGLLVAELLKRVDLSRPTLYRLLDTLNTKGF 66 Query: 68 IQAEGDPQRFRLSHGVMKLAHVWLNGLEVVAIARPVVEGLREATGETAALFREQDDRGIC 127 + +EG+PQRF L V ++AH W G+ +A+P++ L E T ET +L + IC Sbjct: 67 LVSEGEPQRFWLGPAVAQMAHAWSAGMSYETVAQPMMRRLWEKTRETISLHVHEGAFRIC 126 Query: 128 ILECESRHVLSISRGVGHSLSLIQGSTGKAMLAFMDPKRQGALLASIAKSADRARLEDAL 187 + E S LS RGVG+ L++G++G+++LA+++ +Q +A+ R + L Sbjct: 127 VAELPSTQPLSFKRGVGYREKLVRGASGRSILAWLNVNKQDLSAYGAENAAEAKRCTEQL 186 Query: 188 SFARRNGYATSHGEIFAGAVAVSAPCFDHRGEVVGSVGLYGPSARIDERKLLEYSKLVRE 247 R GYATS E+ GAVA++AP FD G VVGS+GL+GPSAR+DE + Y+ L+RE Sbjct: 187 KQIRLEGYATSRDELIQGAVAIAAPFFDSSGRVVGSLGLFGPSARLDEEVVQGYAALLRE 246 Query: 248 AGRQISVLLGYQDGAP 263 Q+S LG+++ P Sbjct: 247 EAAQLSAALGFKNPTP 262 >ref|ZP_03542903.1| transcriptional regulator, IclR family [Comamonas testosteroni KF-1] gb|EED67189.1| transcriptional regulator, IclR family [Comamonas testosteroni KF-1] Length = 262 Score = 196 bits (498), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 103/261 (39%), Positives = 157/261 (60%) Query: 3 KKPKAEVHDAEQGASGVRAVDRAIAILQCFTPDQPAMSVIEIQKRVGLSRPTLYRLLQTL 62 + ++ ++E+ GVRAV RA+ +L F P + V E+ KRV LSRPTLYRLL TL Sbjct: 2 NQKTVDIAESEKSEGGVRAVQRALDVLLAFRPGDDGLLVAELLKRVDLSRPTLYRLLDTL 61 Query: 63 AQRDLIQAEGDPQRFRLSHGVMKLAHVWLNGLEVVAIARPVVEGLREATGETAALFREQD 122 + + +EG+PQRFRL V ++AH W G+ +A+P++ L E T ET +L ++ Sbjct: 62 NTKGFLVSEGEPQRFRLGPAVAQMAHAWSAGMSYETVAQPMMRRLWEKTRETVSLHVQEG 121 Query: 123 DRGICILECESRHVLSISRGVGHSLSLIQGSTGKAMLAFMDPKRQGALLASIAKSADRAR 182 C+ E S LS RGVG+ +L++G++G+++LA+++ +Q + + + R Sbjct: 122 VSRTCVAELPSTQPLSFKRGVGYRENLVRGASGRSILAWLNVDKQDLSVYGAEGTEETKR 181 Query: 183 LEDALSFARRNGYATSHGEIFAGAVAVSAPCFDHRGEVVGSVGLYGPSARIDERKLLEYS 242 + L R GYATS E+ GAVA++AP FD G VVGS+GL+GPSAR+ E + Y+ Sbjct: 182 CTEQLRQIRIEGYATSRDELIQGAVAIAAPFFDSSGRVVGSLGLFGPSARLSEEVVRGYA 241 Query: 243 KLVREAGRQISVLLGYQDGAP 263 L+RE Q+S LG++ P Sbjct: 242 VLLREEAAQLSAALGFKSLEP 262 >gb|AAX18938.1| isophthalate regulator [Comamonas testosteroni] Length = 262 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 102/261 (39%), Positives = 157/261 (60%) Query: 3 KKPKAEVHDAEQGASGVRAVDRAIAILQCFTPDQPAMSVIEIQKRVGLSRPTLYRLLQTL 62 + ++ ++++ GVRAV RA+ +L F P + V E+ KRV LSRPTLYRLL TL Sbjct: 2 NQKTVDMAESDKSEGGVRAVQRALDVLLAFRPGDDGLLVAELLKRVDLSRPTLYRLLDTL 61 Query: 63 AQRDLIQAEGDPQRFRLSHGVMKLAHVWLNGLEVVAIARPVVEGLREATGETAALFREQD 122 + + +EG+PQRFRL V ++AH W G+ +A+P++ L E T ET +L ++ Sbjct: 62 NTKGFLVSEGEPQRFRLGPAVAQVAHAWSAGMSYETVAQPMMRRLWEKTRETVSLHVQEG 121 Query: 123 DRGICILECESRHVLSISRGVGHSLSLIQGSTGKAMLAFMDPKRQGALLASIAKSADRAR 182 C+ E S LS RGVG+ +L++G++G+++LA+++ +Q + + + R Sbjct: 122 VSRTCVAELPSTQPLSFKRGVGYRENLVRGASGRSILAWLNVDKQDLSVYGAESTEEAKR 181 Query: 183 LEDALSFARRNGYATSHGEIFAGAVAVSAPCFDHRGEVVGSVGLYGPSARIDERKLLEYS 242 + L R GYATS E+ GAVA++AP FD G VVGS+GL+GPSAR+ E + Y+ Sbjct: 182 CTEQLRQIRIEGYATSRDELIQGAVAIAAPFFDSSGRVVGSLGLFGPSARLSEEVVRGYA 241 Query: 243 KLVREAGRQISVLLGYQDGAP 263 L+RE Q+S LG++ P Sbjct: 242 VLLREEAAQLSAALGFKSLEP 262 >ref|YP_003607133.1| transcriptional regulator, IclR family [Burkholderia sp. CCGE1002] gb|ADG17622.1| transcriptional regulator, IclR family [Burkholderia sp. CCGE1002] Length = 262 Score = 176 bits (447), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 96/242 (39%), Positives = 140/242 (57%) Query: 18 GVRAVDRAIAILQCFTPDQPAMSVIEIQKRVGLSRPTLYRLLQTLAQRDLIQAEGDPQRF 77 VRAV+RA+ IL F P ++V E+ RV LSRPTLYRLL TL Q + + G+PQRF Sbjct: 9 NVRAVERALEILLAFRPGDKELTVAELLTRVDLSRPTLYRLLNTLEQNGFLASSGEPQRF 68 Query: 78 RLSHGVMKLAHVWLNGLEVVAIARPVVEGLREATGETAALFREQDDRGICILECESRHVL 137 RL V ++AH W+ + +A+P++ L EAT ET ALF + IC+ E ES L Sbjct: 69 RLGSSVAQVAHAWMANNTIAQLAQPMLRELWEATSETVALFVPEGTYRICVAELESPQPL 128 Query: 138 SISRGVGHSLSLIQGSTGKAMLAFMDPKRQGALLASIAKSADRARLEDALSFARRNGYAT 197 S RGVG+ L+ G++G+ +L+ M + D A L L R G+ T Sbjct: 129 SFRRGVGYREKLVLGASGRTILSQMSLSADDLRRYLTDPNQDVATLAADLDAVRAQGFGT 188 Query: 198 SHGEIFAGAVAVSAPCFDHRGEVVGSVGLYGPSARIDERKLLEYSKLVREAGRQISVLLG 257 SH E+ AGAVAV+AP F+ +V GSV ++GPS R+ + ++ +++ L++ +S LG Sbjct: 189 SHHELIAGAVAVAAPFFNGANQVAGSVCIFGPSVRVTDERVAQFAALLKREVGNLSRALG 248 Query: 258 YQ 259 + Sbjct: 249 HH 250 >ref|NP_887275.1| transcriptional regulator [Bordetella bronchiseptica RB50] emb|CAE31225.1| putative transcriptional regulator [Bordetella bronchiseptica RB50] Length = 258 Score = 176 bits (446), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 103/258 (39%), Positives = 146/258 (56%), Gaps = 2/258 (0%) Query: 1 MAKKPKAEVHD-AEQGASGVRAVDRAIAILQCFTPDQPAMSVIEIQKRVGLSRPTLYRLL 59 M AE+ + E+G VRAV+RA+ IL F+ ++ ++ +RVGLSRPTLYRLL Sbjct: 1 MKDSDSAELEEKPEKGGDSVRAVNRALDILLAFSRQDAELTASQLLQRVGLSRPTLYRLL 60 Query: 60 QTLAQRDLIQAEGDPQRFRLSHGVMKLAHVWLNGLEVVAIARPVVEGLREATGETAALFR 119 TL + I A GDPQRFRL V +L+H+W ++ A+A P++ L T ET A+F Sbjct: 61 YTLEAKGFITASGDPQRFRLGPAVARLSHIWTETQDLAALAEPLLRELWNETQETVAIFV 120 Query: 120 EQDDRGICILECESRHVLSISRGVGHSLSLIQGSTGKAMLAFMDPKRQGALLASIAKSAD 179 EQ + +C+ E S LS RGVG++ + G+TG+A+LAF + + D Sbjct: 121 EQGEMRLCLAELPSPQPLSFKRGVGYTERIAMGATGRAILAFKEDALDHLEQYTRGLPLD 180 Query: 180 RARLEDALSFARRNGYATSHGEIFAGAVAVSAPCFDHRGEVVGSVGLYGPSARIDERKLL 239 AR L R+ GYATS E+ GA AV+AP F+ V GS+GL+GP+ R+DE + Sbjct: 181 PARFRRELKQTRQLGYATSRDELIVGAAAVAAPFFNG-DRVAGSIGLFGPATRLDEAAVA 239 Query: 240 EYSKLVREAGRQISVLLG 257 V R++S LG Sbjct: 240 ALGPRVVALARKLSQALG 257