BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0187.0009.p         (131 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EGC09282.1| hypothetical protein ERIG_00194 [Escherichia ferg...    63   1e-08
ref|YP_003712688.1| Ornithine racemase [Xenorhabdus nematophila ...    37   1.3  
ref|YP_259461.1| NAD dependent epimerase/dehydratase family prot...    37   1.3  
ref|YP_003768378.1| amino acid adenylation and esterase domain-c...    34   5.6  
ref|ZP_05089310.1| lipoprotein-releasing system ATP-binding prot...    34   7.0  

>gb|EGC09282.1| hypothetical protein ERIG_00194 [Escherichia fergusonii B253]
 gb|EGC96516.1| hypothetical protein ECD227_2754 [Escherichia fergusonii ECD227]
          Length = 154

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 70/135 (51%), Gaps = 5/135 (3%)

Query: 1   MLRFEYMPSDFHPLFLFLGEAADLAALARLLRRFAENPQSIAVAERIPGAVSRDALVLAP 60
           M+R  Y+PSDFHPL L + E  DL  L+ LL  FA++  S+A+ E+         L++  
Sbjct: 1   MMRCHYLPSDFHPLLLIVCEREDLTLLSALLTTFAKDEISLAINEQSFVEYCSSPLIIEK 60

Query: 61  A--DDEFGMR--DLGGR-FAWELTDWQAERIAERIELLTAEDNKSGSEIVEIGSDGEIPV 115
               D  G+   D   +   W+L    A   +  +E L  +   SGS  +EIG   E+ V
Sbjct: 61  VAIGDGVGITKPDYSTQPLHWKLEKHIAAEYSATLEELAGQGTLSGSCFLEIGYIDEVRV 120

Query: 116 KLSRGEFTDDFLITR 130
           K++ GEF D +L+TR
Sbjct: 121 KVTFGEFDDSWLLTR 135


>ref|YP_003712688.1| Ornithine racemase [Xenorhabdus nematophila ATCC 19061]
 emb|CBJ90525.1| putative Ornithine racemase [Xenorhabdus nematophila ATCC 19061]
          Length = 3279

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/104 (23%), Positives = 48/104 (46%), Gaps = 10/104 (9%)

Query: 26   ALARLLRRFAENPQSIAVAERIPGAVSRDALVLAPADDEFGMRDLGGRFAWELTDWQAER 85
            ++A+L++   +   S+   E+IP A++     LA +   F            + +++   
Sbjct: 2514 SVAQLMQEMQQKLVSLLQFEQIPTAIAEQCSNLASSGSLFD----------SILNYRHSE 2563

Query: 86   IAERIELLTAEDNKSGSEIVEIGSDGEIPVKLSRGEFTDDFLIT 129
            ++ +   L     K+G E+VE+      P+ LS  +F DDF +T
Sbjct: 2564 VSGKTSELHQRWQKTGIELVEVKERTNYPITLSIDDFGDDFSVT 2607


>ref|YP_259461.1| NAD dependent epimerase/dehydratase family protein [Pseudomonas
           fluorescens Pf-5]
 gb|AAY91627.1| NAD dependent epimerase/dehydratase family protein [Pseudomonas
           fluorescens Pf-5]
          Length = 356

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 14/72 (19%)

Query: 47  IPGAVSRDALVLAPADDEFGMR------DLGGRFAWELTDWQAERI----AERIELLTAE 96
           + G + RD L L+PAD E  +R       LG  FAW L+  Q+  +    A+R+ LL AE
Sbjct: 59  VAGDLERDNLGLSPADREL-LRHARIVFHLGAHFAWGLSLAQSRAVNVAGAKRVALLAAE 117

Query: 97  DNKSGSEIVEIG 108
            N   S +V IG
Sbjct: 118 QN---SRLVMIG 126


>ref|YP_003768378.1| amino acid adenylation and esterase domain-containing protein
           [Amycolatopsis mediterranei U32]
 gb|ADJ47976.1| amino acid adenylation and esterase domain-containing protein
           [Amycolatopsis mediterranei U32]
 gb|AEK44876.1| amino acid adenylation and esterase domain-containing protein
           [Amycolatopsis mediterranei S699]
          Length = 1011

 Score = 34.3 bits (77), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 2/84 (2%)

Query: 49  GAVSRDALVLAPADDEFGMRDLGGRFAWELTDW--QAERIAERIELLTAEDNKSGSEIVE 106
           GA++ + +V A  D    + DLG R   EL      A  +A R + +  E    G  IV 
Sbjct: 51  GALTGEPVVTAVHDGRPRVVDLGHRTWRELIAHVAGAPAVAARCDTVVGEGELGGDAIVH 110

Query: 107 IGSDGEIPVKLSRGEFTDDFLITR 130
           IG DG+  V   R E+ DD    R
Sbjct: 111 IGLDGDALVVRCRREWVDDAYAAR 134


>ref|ZP_05089310.1| lipoprotein-releasing system ATP-binding protein LolD [Ruegeria sp.
           R11]
 gb|EEB71002.1| lipoprotein-releasing system ATP-binding protein LolD [Ruegeria sp.
           R11]
          Length = 238

 Score = 34.3 bits (77), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 20/104 (19%)

Query: 39  QSIAVAERIPGAVSRDALVLAPADDEFGMRDLGGRFAWELTDWQAERI------AERIEL 92
           Q+IA+  R+ G + RD   LA      G+ +L GRF  +L+  Q +R+      A R +L
Sbjct: 119 QNIALHARLAGRLDRD--WLAELSSRLGLAELTGRFPEQLSGGQQQRVAIARALALRPKL 176

Query: 93  LTAE------DNKSGSEIVEIGSDGEIPVKLSRGEFTDDFLITR 130
           L A+      D K+G+ ++E+  D      LSR   +   L+T 
Sbjct: 177 LLADEPTGNLDEKTGASVLELMLD------LSRDNGSALLLVTH 214