BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0185.0017.p (428 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773262.1| multidrug resistance efflux pump [Bradyrhizobiu... 551 e-155 ref|YP_001242018.1| putative multidrug resistance protein A [Bra... 521 e-145 ref|YP_532053.1| secretion protein HlyD [Rhodopseudomonas palust... 499 e-139 ref|YP_001207560.1| putative multidrug resistance protein A [Bra... 496 e-138 ref|YP_485599.1| secretion protein HlyD [Rhodopseudomonas palust... 496 e-138 >ref|NP_773262.1| multidrug resistance efflux pump [Bradyrhizobium japonicum USDA 110] dbj|BAC51887.1| multidrug resistance efflux pump [Bradyrhizobium japonicum USDA 110] Length = 438 Score = 551 bits (1421), Expect = e-155, Method: Compositional matrix adjust. Identities = 323/438 (73%), Positives = 367/438 (83%), Gaps = 10/438 (2%) Query: 1 MAAARDQAARIVRSGPEMAEDAIAR---DASADLGEQGR---ADEAKRPAEAPPASAPEQ 54 MA +RDQAAR++R A + SA L EQ R A+EAKR ++AP ++ Sbjct: 1 MAVSRDQAARVLRQDTVETNSANGEPVTETSAVLAEQLRSHVAEEAKRRSDAPGKPVTDK 60 Query: 55 PAASSAAAPA----PKSGKRKFVMMGVVGLLALAAASYAAYYLMVGRFYVSTDDAYVRAN 110 PA + APA PKSGKRKFV++GV +LALAAA YA YY +VGRFY++TDDAYVRAN Sbjct: 61 PATPGSDAPAASGTPKSGKRKFVLVGVGLVLALAAAGYAGYYTLVGRFYIATDDAYVRAN 120 Query: 111 NSMLGARVAGHIAAILPGDNALVRAGDVIFRIDDGDYRIAVDAARTRIATQQATIERIGR 170 N+MLGARVAGHI++IL GDN VRAGDVIFRIDDGDY+IAVDAA TRIATQQATI+RIGR Sbjct: 121 NTMLGARVAGHISSILAGDNTTVRAGDVIFRIDDGDYKIAVDAAATRIATQQATIDRIGR 180 Query: 171 QVAAAVSSVEQAQAQLVSAQAGLKRADLDFDRQQALSTKGFASRATFEVSEAGRDQGAAS 230 Q+AA S V QA+AQLVSA+AGLKRADLD++RQQALS+KGFASRATFE SEAGRDQGAA+ Sbjct: 181 QIAALESQVAQAKAQLVSAEAGLKRADLDYERQQALSSKGFASRATFESSEAGRDQGAAA 240 Query: 231 VRSAQAAYDAAKDNVEVTKAQQAEARAQLAELQTQLAKAERDLEFTNVRAPVDGTFSNRL 290 V++AQAAYD A NV+VTKAQQAEA+AQLAEL+T LAKAERDL FT VRAPV+GTFSNRL Sbjct: 241 VKAAQAAYDVAVSNVDVTKAQQAEAQAQLAELKTSLAKAERDLAFTAVRAPVNGTFSNRL 300 Query: 291 VNTGDYINVGQRLGNVVPLDGVYIDANYKETQLKRIRTGQRVTIKVDAYGFRKFTGLVDS 350 V+ GD++ VGQRLGNVVPLD VYIDAN+KETQLKRIR GQ VTIKVDAYG RKF+G+VDS Sbjct: 301 VSAGDFVAVGQRLGNVVPLDDVYIDANFKETQLKRIRPGQPVTIKVDAYGMRKFSGVVDS 360 Query: 351 ISPAAGSVFTLLPPDNATGNFTKIVQRLPVRIRVPASVAKQGLLRAGMSVYTTVDTREGA 410 I+ AGSVFTLLPPDNATGNFTKIVQR+PVRIRVP SVAKQ LLRAGMSVY TVDT +GA Sbjct: 361 IAAGAGSVFTLLPPDNATGNFTKIVQRVPVRIRVPKSVAKQNLLRAGMSVYATVDTNKGA 420 Query: 411 ADADAETDLDAPMMIHPQ 428 ADAD+E DLD P MIHPQ Sbjct: 421 ADADSEVDLDDPTMIHPQ 438 >ref|YP_001242018.1| putative multidrug resistance protein A [Bradyrhizobium sp. BTAi1] gb|ABQ38112.1| putative multidrug resistance protein A [Bradyrhizobium sp. BTAi1] Length = 456 Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust. Identities = 299/437 (68%), Positives = 343/437 (78%), Gaps = 34/437 (7%) Query: 1 MAAARDQAARIVR----SGPEMAEDAIARDASAD---------------LGEQGRAD--- 38 MAAAR+QA R R P+ + A AR +++ GE G + Sbjct: 1 MAAAREQAVRARRPDAEEAPDQGQPATARPQASEPAQHKAAETRTNDVKAGEAGTKEADI 60 Query: 39 EAKRPAEAP---------PASAPEQPAASSAAAPAPKSGKRKFVMMGVVGLLALAAASYA 89 +A AEAP A A ++P AS+AA PKSGKRK V+ GV LLALAAA YA Sbjct: 61 KADSVAEAPLERPPAAPAGAPAGQKPPASTAA---PKSGKRKRVLTGVGLLLALAAAGYA 117 Query: 90 AYYLMVGRFYVSTDDAYVRANNSMLGARVAGHIAAILPGDNALVRAGDVIFRIDDGDYRI 149 +Y +VGRF VSTDD+YVRANN+MLGARV+GHI I+P DN++VR GDVIFRIDDGDY+I Sbjct: 118 THYFIVGRFMVSTDDSYVRANNTMLGARVSGHIQEIVPRDNSVVRKGDVIFRIDDGDYKI 177 Query: 150 AVDAARTRIATQQATIERIGRQVAAAVSSVEQAQAQLVSAQAGLKRADLDFDRQQALSTK 209 AVDAAR++IATQ+ATI RIGRQVAA S+VEQAQA L S++A +KRA LD++RQQALS+K Sbjct: 178 AVDAARSKIATQEATIARIGRQVAAQQSAVEQAQANLTSSEAAMKRAGLDYERQQALSSK 237 Query: 210 GFASRATFEVSEAGRDQGAASVRSAQAAYDAAKDNVEVTKAQQAEARAQLAELQTQLAKA 269 GFAS ATFE SEA RDQG A+VR+A+AA+DAA+DNVEVTKAQQ EA+AQLAEL+T LAKA Sbjct: 238 GFASHATFEQSEAARDQGMAAVRAARAAFDAARDNVEVTKAQQVEAQAQLAELKTSLAKA 297 Query: 270 ERDLEFTNVRAPVDGTFSNRLVNTGDYINVGQRLGNVVPLDGVYIDANYKETQLKRIRTG 329 ERDLEF VRAPVDGTFSNRLVNTGD++ VGQRLGNVVPLD V+IDAN+KETQLKRIR G Sbjct: 298 ERDLEFATVRAPVDGTFSNRLVNTGDFVAVGQRLGNVVPLDDVFIDANFKETQLKRIRPG 357 Query: 330 QRVTIKVDAYGFRKFTGLVDSISPAAGSVFTLLPPDNATGNFTKIVQRLPVRIRVPASVA 389 Q VTIKVDAYG R F G+VDSISPAAGSVFTLLPPDNATGNFTKIVQRLPVRIRVP VA Sbjct: 358 QPVTIKVDAYGARGFKGVVDSISPAAGSVFTLLPPDNATGNFTKIVQRLPVRIRVPKEVA 417 Query: 390 KQGLLRAGMSVYTTVDT 406 +Q LLRAGMSVY TVDT Sbjct: 418 RQNLLRAGMSVYVTVDT 434 >ref|YP_532053.1| secretion protein HlyD [Rhodopseudomonas palustris BisB18] gb|ABD87734.1| secretion protein HlyD [Rhodopseudomonas palustris BisB18] Length = 408 Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust. Identities = 278/412 (67%), Positives = 328/412 (79%), Gaps = 8/412 (1%) Query: 1 MAAARDQAARIVRSGPEMAEDAIARDASADLGEQGRADEAKRPAEAPPASAP--EQPAAS 58 MA +RDQ ARI+ E D++ +A + R + +P A AP +QP A+ Sbjct: 1 MAGSRDQTARILPV--ETDVDSVPARVAAPAHDPVRPQPEQ--TASPRAEAPMQDQPQAT 56 Query: 59 SAAAP--APKSGKRKFVMMGVVGLLALAAASYAAYYLMVGRFYVSTDDAYVRANNSMLGA 116 P A KS KRK + +GV LLALAA + Y++VGRF V TDDAYVRANN+ LGA Sbjct: 57 DKVPPRTANKSNKRKLIGLGVAALLALAAIYFGVNYMLVGRFLVGTDDAYVRANNTTLGA 116 Query: 117 RVAGHIAAILPGDNALVRAGDVIFRIDDGDYRIAVDAARTRIATQQATIERIGRQVAAAV 176 RV+GH+AAILPGDN VRAGDV+FRIDDGDYRIAVD+AR +IATQQATIERIGRQV A + Sbjct: 117 RVSGHLAAILPGDNVQVRAGDVVFRIDDGDYRIAVDSARAKIATQQATIERIGRQVTAQL 176 Query: 177 SSVEQAQAQLVSAQAGLKRADLDFDRQQALSTKGFASRATFEVSEAGRDQGAASVRSAQA 236 S+VEQA+AQL SA A KRA LDFDRQQALSTKGFASRATFEVS+AGRDQGAA+V++AQA Sbjct: 177 SAVEQAKAQLASADAASKRAGLDFDRQQALSTKGFASRATFEVSQAGRDQGAAAVQAAQA 236 Query: 237 AYDAAKDNVEVTKAQQAEARAQLAELQTQLAKAERDLEFTNVRAPVDGTFSNRLVNTGDY 296 AY AA DNVEVTKAQQ EARAQL ELQ LAKA RDL+FT VRAPVDG FSNRLVNTGD+ Sbjct: 237 AYAAASDNVEVTKAQQLEARAQLVELQAALAKALRDLDFTIVRAPVDGIFSNRLVNTGDF 296 Query: 297 INVGQRLGNVVPLDGVYIDANYKETQLKRIRTGQRVTIKVDAYGFRKFTGLVDSISPAAG 356 I GQRLGNVVPLD VYIDAN+KETQL+R++ GQ+V I VDA+ R G +DS+SPAAG Sbjct: 297 IQAGQRLGNVVPLDDVYIDANFKETQLRRLKPGQKVDISVDAFSNRHIEGTLDSLSPAAG 356 Query: 357 SVFTLLPPDNATGNFTKIVQRLPVRIRVPASVAKQGLLRAGMSVYTTVDTRE 408 +VFTLLPPDNATGNFTKIVQR+PVR++VPA+VA++ +LRAGMSVY +V+T++ Sbjct: 357 AVFTLLPPDNATGNFTKIVQRVPVRVKVPAAVARENMLRAGMSVYVSVNTKD 408 >ref|YP_001207560.1| putative multidrug resistance protein A [Bradyrhizobium sp. ORS 278] emb|CAL79343.1| putative multidrug resistance protein A (drug efflux transporter, EmrA-like) [Bradyrhizobium sp. ORS 278] Length = 447 Score = 496 bits (1278), Expect = e-138, Method: Compositional matrix adjust. Identities = 283/361 (78%), Positives = 319/361 (88%) Query: 66 KSGKRKFVMMGVVGLLALAAASYAAYYLMVGRFYVSTDDAYVRANNSMLGARVAGHIAAI 125 KSGKRK V+ G+ LLALAAA YA +Y+MVGRF VSTDD+YVRANN+MLGARV+GHI I Sbjct: 85 KSGKRKRVLAGIGLLLALAAAGYATHYIMVGRFMVSTDDSYVRANNTMLGARVSGHIQEI 144 Query: 126 LPGDNALVRAGDVIFRIDDGDYRIAVDAARTRIATQQATIERIGRQVAAAVSSVEQAQAQ 185 +P DN++V GDVIFRIDDGDY+IAVDAART+IATQ+ATI RIGRQVAA S+VEQAQA Sbjct: 145 VPRDNSVVHKGDVIFRIDDGDYKIAVDAARTKIATQEATIARIGRQVAAQQSAVEQAQAN 204 Query: 186 LVSAQAGLKRADLDFDRQQALSTKGFASRATFEVSEAGRDQGAASVRSAQAAYDAAKDNV 245 L S++A +KRA LD++RQQALS+KGFAS ATFE SEA RDQG A+VR+AQAA+DAA+DNV Sbjct: 205 LTSSEAAMKRAGLDYERQQALSSKGFASHATFEQSEAARDQGQAAVRAAQAAFDAARDNV 264 Query: 246 EVTKAQQAEARAQLAELQTQLAKAERDLEFTNVRAPVDGTFSNRLVNTGDYINVGQRLGN 305 EVTKAQQAEA+AQLAEL+T LAKAERDLEF VRAPVDGTFSNRLV+TGD++ VGQRLGN Sbjct: 265 EVTKAQQAEAQAQLAELKTSLAKAERDLEFAIVRAPVDGTFSNRLVSTGDFVAVGQRLGN 324 Query: 306 VVPLDGVYIDANYKETQLKRIRTGQRVTIKVDAYGFRKFTGLVDSISPAAGSVFTLLPPD 365 VVPLD V+IDANYKETQLKRIR GQ VTIKVDAYG R F G+VDSISPAAGSVFTLLPPD Sbjct: 325 VVPLDDVFIDANYKETQLKRIRPGQPVTIKVDAYGARGFKGVVDSISPAAGSVFTLLPPD 384 Query: 366 NATGNFTKIVQRLPVRIRVPASVAKQGLLRAGMSVYTTVDTREGAADADAETDLDAPMMI 425 NATGNFTKIVQRLPVRIRVP VA+Q LLRAGMSVY TVDT +GA DAD++TDLDAP + Sbjct: 385 NATGNFTKIVQRLPVRIRVPKEVARQNLLRAGMSVYVTVDTTDGAKDADSDTDLDAPATV 444 Query: 426 H 426 Sbjct: 445 Q 445 >ref|YP_485599.1| secretion protein HlyD [Rhodopseudomonas palustris HaA2] gb|ABD06688.1| Secretion protein HlyD [Rhodopseudomonas palustris HaA2] Length = 411 Score = 496 bits (1278), Expect = e-138, Method: Compositional matrix adjust. Identities = 281/419 (67%), Positives = 321/419 (76%), Gaps = 22/419 (5%) Query: 3 AARDQAARIVRSGPEMAEDAIARDASADLGEQGRADEAKRPAEAPPAS----APEQPAAS 58 + RDQAAR++RS P A++A R A +A RP P++ P QP Sbjct: 2 SGRDQAARVLRSEP--AQEADPRAAVPP--------QAARPLPDDPSTLKRAEPVQPDTK 51 Query: 59 S--------AAAPAPKSGKRKFVMMGVVGLLALAAASYAAYYLMVGRFYVSTDDAYVRAN 110 S AA A K G+++ ++ V A A + Y++VGRF VSTDDAYVRAN Sbjct: 52 SEPVAPATEPAAAAKKPGRKRLALIAVGLAALAAGAYFGTDYMLVGRFMVSTDDAYVRAN 111 Query: 111 NSMLGARVAGHIAAILPGDNALVRAGDVIFRIDDGDYRIAVDAARTRIATQQATIERIGR 170 N+ LGARVAGHIAAI+P DN LV+AGDV+FRIDDGDYRIAVD AR +IATQQATIERIGR Sbjct: 112 NTTLGARVAGHIAAIVPRDNTLVKAGDVVFRIDDGDYRIAVDTARAKIATQQATIERIGR 171 Query: 171 QVAAAVSSVEQAQAQLVSAQAGLKRADLDFDRQQALSTKGFASRATFEVSEAGRDQGAAS 230 QV A S+VEQAQAQ SA+A +RA LDFDRQQALSTKGFASRA FE S+A RDQG AS Sbjct: 172 QVTAQESAVEQAQAQRESAEASARRATLDFDRQQALSTKGFASRAVFETSQASRDQGTAS 231 Query: 231 VRSAQAAYDAAKDNVEVTKAQQAEARAQLAELQTQLAKAERDLEFTNVRAPVDGTFSNRL 290 V +A+AAYDAA+DNVEVTKAQQ EARAQL ELQ+ LAKAERDL+FTNVRAPVDG FSNR+ Sbjct: 232 VAAAKAAYDAARDNVEVTKAQQNEARAQLVELQSSLAKAERDLDFTNVRAPVDGVFSNRM 291 Query: 291 VNTGDYINVGQRLGNVVPLDGVYIDANYKETQLKRIRTGQRVTIKVDAYGFRKFTGLVDS 350 VNTGDYIN GQRLGN+VPL GVYIDAN+KETQL R++ GQ V I VDAY RK G VDS Sbjct: 292 VNTGDYINAGQRLGNIVPLSGVYIDANFKETQLARLKPGQTVDISVDAYSGRKIEGTVDS 351 Query: 351 ISPAAGSVFTLLPPDNATGNFTKIVQRLPVRIRVPASVAKQGLLRAGMSVYTTVDTREG 409 +SPAAG VFTLLPPDNATGNFTK+VQR+PVRIRVPA VA++GLLRAGMSVY VDTR G Sbjct: 352 LSPAAGQVFTLLPPDNATGNFTKVVQRVPVRIRVPAEVAREGLLRAGMSVYIRVDTRTG 410