BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0185.0008.p         (125 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_772745.1| two-component response regulator [Bradyrhizobiu...   137   6e-31
ref|NP_771826.1| two-component response regulator [Bradyrhizobiu...   134   3e-30
ref|YP_487350.1| response regulator receiver domain-containing p...   125   2e-27
ref|YP_568864.1| response regulator receiver [Rhodopseudomonas p...   120   6e-26
ref|NP_774298.1| two-component response regulator [Bradyrhizobiu...   107   4e-22

>ref|NP_772745.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 dbj|BAC51370.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 131

 Score =  137 bits (345), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 61/121 (50%), Positives = 91/121 (75%)

Query: 1   LQDAPIILVIEDDRDLQMMVEDALRDGGYEPAIAGSGEEALTLLKAFRTKYSALVTDIRL 60
           ++  PIILV+ED+  LQ +V DAL++GG++     SG+EA+ ++++   KYSALVTD+ L
Sbjct: 5   MEGVPIILVVEDEEPLQEIVHDALKEGGFDLTTVASGQEAVAMVESGVVKYSALVTDVNL 64

Query: 61  LGRLDGWRVARGAREIDPSFPVLYITGGGGDEWPTRGVPDSVLLNKPFSPDELVAAVAKL 120
            G + GW +AR  R+IDP+FPV+Y+TG   ++W + GVP+SVLL KPF+P +LV AV++L
Sbjct: 65  KGPMKGWEIARLIRQIDPAFPVVYMTGAAAEDWASEGVPNSVLLEKPFAPAQLVTAVSQL 124

Query: 121 L 121
           L
Sbjct: 125 L 125


>ref|NP_771826.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 dbj|BAC50451.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 131

 Score =  134 bits (338), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 59/121 (48%), Positives = 91/121 (75%)

Query: 1   LQDAPIILVIEDDRDLQMMVEDALRDGGYEPAIAGSGEEALTLLKAFRTKYSALVTDIRL 60
           ++  PIILV+ED+  LQ +V DAL++GG++     SG+EA+ ++++   KYSALVTD+ L
Sbjct: 5   MEGVPIILVVEDEEPLQEIVSDALKEGGFDLTTVPSGQEAVAMVESGVVKYSALVTDVNL 64

Query: 61  LGRLDGWRVARGAREIDPSFPVLYITGGGGDEWPTRGVPDSVLLNKPFSPDELVAAVAKL 120
            G + GW +AR  R+I+P+FPV+Y+TG   ++W + GVP+S+LL KPF+P +LV AV++L
Sbjct: 65  KGPMKGWEIARLVRQINPAFPVVYMTGAAAEDWASEGVPNSILLKKPFAPAQLVTAVSQL 124

Query: 121 L 121
           L
Sbjct: 125 L 125


>ref|YP_487350.1| response regulator receiver domain-containing protein
           [Rhodopseudomonas palustris HaA2]
 gb|ABD08439.1| response regulator receiver domain protein [Rhodopseudomonas
           palustris HaA2]
          Length = 133

 Score =  125 bits (314), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 61/124 (49%), Positives = 91/124 (73%), Gaps = 2/124 (1%)

Query: 1   LQDAPIILVIEDDRDLQMMVEDALRDGGYEPAIAGSGEEALTLLKAFRTKYSALVTDIRL 60
           + ++ ++LV+EDD  +Q +V++AL DGG++  IA SGE+A+ L    + ++ AL+TD+ L
Sbjct: 1   MDNSIVVLVVEDDPMIQTVVQEALEDGGFDVEIASSGEDAVKLFDDMQ-RFRALLTDVNL 59

Query: 61  -LGRLDGWRVARGAREIDPSFPVLYITGGGGDEWPTRGVPDSVLLNKPFSPDELVAAVAK 119
             GR+DGW V R ARE DP+FPV+Y+TG    EW  RGVP S+L+ KPF+P ++VAAVA+
Sbjct: 60  GRGRMDGWDVGRAAREADPAFPVIYMTGDSAGEWAARGVPGSLLITKPFAPSQVVAAVAQ 119

Query: 120 LLEN 123
           LL +
Sbjct: 120 LLNS 123


>ref|YP_568864.1| response regulator receiver [Rhodopseudomonas palustris BisB5]
 gb|ABE38963.1| response regulator receiver [Rhodopseudomonas palustris BisB5]
          Length = 132

 Score =  120 bits (301), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 62/124 (50%), Positives = 86/124 (69%), Gaps = 2/124 (1%)

Query: 1   LQDAPIILVIEDDRDLQMMVEDALRDGGYEPAIAGSGEEALTLLKAFRTKYSALVTDIRL 60
           + ++ +ILV+EDD  +Q +V +AL +GG+E  IA SGEEA+ LL     ++  LVTD+ L
Sbjct: 1   MDNSIVILVVEDDPMIQSIVLEALEEGGFEAVIASSGEEAVDLLTD-GDRFRGLVTDVNL 59

Query: 61  -LGRLDGWRVARGAREIDPSFPVLYITGGGGDEWPTRGVPDSVLLNKPFSPDELVAAVAK 119
              R+ GW V R  REIDP+FPV+Y+TG    EW  RGVP+S+LL KPF+P ++VAAV +
Sbjct: 60  GRDRMPGWEVGRRVREIDPAFPVVYMTGDSAAEWAARGVPNSILLTKPFAPSQVVAAVTQ 119

Query: 120 LLEN 123
           LL  
Sbjct: 120 LLNT 123


>ref|NP_774298.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 dbj|BAC52923.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 125

 Score =  107 bits (268), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 52/125 (41%), Positives = 80/125 (64%)

Query: 1   LQDAPIILVIEDDRDLQMMVEDALRDGGYEPAIAGSGEEALTLLKAFRTKYSALVTDIRL 60
           + +A  +LV+ED+  +   +EDAL DGG+E     SGE A++  +  R +  AL+TD+ L
Sbjct: 1   MSNALRVLVVEDEALICSFIEDALSDGGFEACSVHSGEAAMSTFRDGREQCRALLTDVNL 60

Query: 61  LGRLDGWRVARGAREIDPSFPVLYITGGGGDEWPTRGVPDSVLLNKPFSPDELVAAVAKL 120
              + GW +AR  REI P FPV+Y+T     +W ++GV  S+L+ KPF+P +L AAV++L
Sbjct: 61  GDGISGWELARQIREITPGFPVVYMTSASAPDWKSQGVDGSLLIEKPFAPAQLAAAVSQL 120

Query: 121 LENAA 125
           L+  A
Sbjct: 121 LDTRA 125