BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0185.0004.p         (83 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_949827.1| hypothetical protein RPA4491 [Rhodopseudomonas ...    68   4e-10
ref|YP_351364.1| outer membrane autotransporter barrel protein [...    56   2e-06
ref|YP_001669095.1| outer membrane autotransporter [Pseudomonas ...    56   2e-06
ref|ZP_00048003.1| COG4625: Uncharacterized protein with a C-ter...    55   4e-06
ref|YP_004674672.1| hypothetical protein HYPMC_0865 [Hyphomicrob...    53   2e-05

>ref|NP_949827.1| hypothetical protein RPA4491 [Rhodopseudomonas palustris CGA009]
 emb|CAE29932.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
          Length = 971

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/45 (71%), Positives = 38/45 (84%)

Query: 6   DGDGIDIDNVLTLTNYGIVQGTGATGADDGGRFNNSEGLAIGGGT 50
           DGDG+D+D   T+TNYGI++GTGA G D GGR NNSEGL+IGGGT
Sbjct: 420 DGDGVDVDFAATVTNYGIIEGTGAGGYDSGGRLNNSEGLSIGGGT 464


>ref|YP_351364.1| outer membrane autotransporter barrel protein [Pseudomonas
           fluorescens Pf0-1]
 gb|ABA77373.1| uncharacterized protein with outer membrane autotransporter barrel
           [Pseudomonas fluorescens Pf0-1]
          Length = 985

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/44 (59%), Positives = 32/44 (72%)

Query: 6   DGDGIDIDNVLTLTNYGIVQGTGATGADDGGRFNNSEGLAIGGG 49
           DGDG+DID +  + NYG +QG GA G D GG  N SEG+A+GGG
Sbjct: 272 DGDGVDIDKIAHIENYGTIQGVGAGGVDKGGFANGSEGIALGGG 315


>ref|YP_001669095.1| outer membrane autotransporter [Pseudomonas putida GB-1]
 gb|ABY98759.1| outer membrane autotransporter barrel domain protein [Pseudomonas
           putida GB-1]
          Length = 994

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/45 (60%), Positives = 34/45 (75%)

Query: 6   DGDGIDIDNVLTLTNYGIVQGTGATGADDGGRFNNSEGLAIGGGT 50
           DGDG+DIDN+  + N G +QG GA G D GGR N SEG+A+GGG+
Sbjct: 283 DGDGVDIDNIGHVYNAGTIQGLGAKGVDSGGRPNGSEGIAMGGGS 327


>ref|ZP_00048003.1| COG4625: Uncharacterized protein with a C-terminal OMP (outer
           membrane protein) domain [Magnetospirillum
           magnetotacticum MS-1]
          Length = 418

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/49 (53%), Positives = 33/49 (67%)

Query: 1   VSTRSDGDGIDIDNVLTLTNYGIVQGTGATGADDGGRFNNSEGLAIGGG 49
           +    DGDG+DID +  + NYG +QG GA G D GG  N SEG+A+GGG
Sbjct: 92  LQANGDGDGVDIDKIAHIENYGTIQGVGAGGVDKGGFANGSEGIALGGG 140


>ref|YP_004674672.1| hypothetical protein HYPMC_0865 [Hyphomicrobium sp. MC1]
 emb|CCB64098.1| conserved exported protein of unknown function [Hyphomicrobium sp.
           MC1]
          Length = 958

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/50 (60%), Positives = 34/50 (68%), Gaps = 1/50 (2%)

Query: 1   VSTRSDGDGIDIDNVLTLTNYGIVQGTGATGADDGGRFNNSEGLAIGGGT 50
           VS   DGDG+DID    +TNYG +QGTGA G  DG   N SEG+A GGGT
Sbjct: 272 VSENGDGDGVDIDFKANITNYGTIQGTGAKGEKDGSP-NTSEGIAAGGGT 320