BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0184.0112.p (366 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767156.1| two-component hybrid sensor and regulator [Brad... 468 e-130 ref|YP_001202449.1| sensor histidine kinase [Bradyrhizobium sp. ... 421 e-116 ref|YP_001236434.1| sensor histidine kinase [Bradyrhizobium sp. ... 412 e-113 ref|YP_533069.1| periplasmic sensor hybrid histidine kinase [Rho... 377 e-102 ref|YP_004109694.1| integral membrane sensor hybrid histidine ki... 367 2e-99 >ref|NP_767156.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC45781.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] Length = 717 Score = 468 bits (1205), Expect = e-130, Method: Compositional matrix adjust. Identities = 232/340 (68%), Positives = 281/340 (82%) Query: 1 VQTAQRNSLRLLQWMMAAALALPLALFVFASAMSWISTSEAADQEIQRTLDVAHEHALKV 60 +Q AQRNSL+LLQWMMAA+LALP+ALF A+ +S+ ST + AD+EI+RTLDVAHEHALKV Sbjct: 1 MQGAQRNSLKLLQWMMAASLALPIALFAIAATISYTSTKDIADREIERTLDVAHEHALKV 60 Query: 61 FETIDRGLAEVTEVVRGMGDADIGAREKSLHERLRQVAVALPQVKSVWVFDANGRALVNS 120 FETIDR LAE+ EVVRG+ D I ARE +LH RL+++A +LPQ+KS W+FDANG+ALVNS Sbjct: 61 FETIDRSLAELNEVVRGLPDDLIRAREPALHRRLKRLADSLPQLKSAWIFDANGKALVNS 120 Query: 121 LVQPAPDVDFSDRDYFRIHAQGDIGTYIGEVLTPRPPYQGSRFFSVGRRRNGDDGSFAGV 180 L P P++ F+DRDYF H IGT+IG LTPRPPYQG+RFF + RRR+ DDGSF GV Sbjct: 121 LASPPPELSFADRDYFYAHVDQAIGTFIGMPLTPRPPYQGARFFGMSRRRDSDDGSFIGV 180 Query: 181 IQVSVLPEYFENFYARIGREPGSFLALIRTDGAVLAHFPAVNRDVRFEPSGPLGRQIVAN 240 IQ SVLPEYFE+FYARIG +PGSF A+ R DG VLAHFP ++RD+R +P GP+GRQI A+ Sbjct: 181 IQASVLPEYFESFYARIGSDPGSFFAMGRADGVVLAHFPRLDRDLRLDPGGPVGRQIAAH 240 Query: 241 PEAGAMTIHSPADGIERRMRYQRLAGYPVYVSAGLETSVIQSRWMSTMAQHLIFGIPATA 300 P G MTI P+DGIERR+ Y+R+A YP+YVSAGLETS I++RW++TM QHL+FG+PATA Sbjct: 241 PAHGLMTIAWPSDGIERRLGYRRIAEYPIYVSAGLETSAIRARWLATMGQHLVFGVPATA 300 Query: 301 LLFGLLALAFRRTQRLQEEALRRIEAEEALRHGQRLEALG 340 LLF LLA AFRRTQ LQ EA +R EAEEAL+H QRLEALG Sbjct: 301 LLFLLLAFAFRRTQHLQTEAAKRREAEEALKHSQRLEALG 340 >ref|YP_001202449.1| sensor histidine kinase [Bradyrhizobium sp. ORS 278] emb|CAL74199.1| putative sensor histidine kinase with a Response regulator receiver domain [Bradyrhizobium sp. ORS 278] Length = 716 Score = 421 bits (1083), Expect = e-116, Method: Compositional matrix adjust. Identities = 210/342 (61%), Positives = 261/342 (76%), Gaps = 7/342 (2%) Query: 1 VQTAQRNSLRLLQWMMAAALALPLALFVFASAMSWISTSEAADQEIQRTLDVAHEHALKV 60 +QTAQR SL +L+WMM A+LALP+ALF+ A+ +S+ +T++ AD+EI+R+LDV HEHALKV Sbjct: 1 MQTAQRKSLTMLRWMMVASLALPIALFLVAAYVSYGATTDEADREIRRSLDVVHEHALKV 60 Query: 61 FETIDRGLAEVTEVVRGMGDADIGAREKSLHERLRQVAVALPQVKSVWVFDANGRALVNS 120 FETI+R L+E+ E+VR + D+DI RE++LH RLRQ++ +LPQ+KS WVFDANGR LVNS Sbjct: 61 FETIERSLSEIDEIVRDLSDSDIKTREQALHVRLRQLSDSLPQMKSAWVFDANGRPLVNS 120 Query: 121 LVQPAPDVDFSDRDYFRIHAQGDIGTYIGEVLTPRPPYQGSRFFSVGRRRNGDDGSFAGV 180 L+ PAP+V F DRDYF H + IGT+IG LTPR PY G+ FFSV RRR DDGSF G+ Sbjct: 121 LIYPAPEVSFLDRDYFSAHVKDSIGTFIGAPLTPRSPYPGAAFFSVSRRRQSDDGSFTGI 180 Query: 181 IQVSVLPEYFENFYARIGREPGSFLALIRTDGAVLAHFPAVNRDVRFEPSGPLGRQIVAN 240 IQ SVLP+YFE+FYARIGR PGS+ AL R DG LA FPA R +GP I A Sbjct: 181 IQASVLPDYFEHFYARIGRAPGSYFALKRFDGLTLARFPAAERS-----AGPAPNDIPAG 235 Query: 241 PEAGA--MTIHSPADGIERRMRYQRLAGYPVYVSAGLETSVIQSRWMSTMAQHLIFGIPA 298 +T S DGIERR+ YQRL GYPVYV+AGLET+ I++RW+ TM++HLIFGIPA Sbjct: 236 AADTEQLVTETSRRDGIERRVGYQRLPGYPVYVAAGLETATIRNRWLGTMSRHLIFGIPA 295 Query: 299 TALLFGLLALAFRRTQRLQEEALRRIEAEEALRHGQRLEALG 340 TALL L LA RRT+R EA RR+EAE+AL+HGQR+EALG Sbjct: 296 TALLVVFLTLARRRTERFYIEAARRLEAEDALKHGQRMEALG 337 >ref|YP_001236434.1| sensor histidine kinase [Bradyrhizobium sp. BTAi1] gb|ABQ32528.1| putative sensor histidine kinase with a Response regulator receiver domain [Bradyrhizobium sp. BTAi1] Length = 716 Score = 412 bits (1058), Expect = e-113, Method: Compositional matrix adjust. Identities = 208/345 (60%), Positives = 259/345 (75%), Gaps = 13/345 (3%) Query: 1 VQTAQRNSLRLLQWMMAAALALPLALFVFASAMSWISTSEAADQEIQRTLDVAHEHALKV 60 +QTAQR SL +L+WMM A+LALP+ALF+ A+ +S+ ST E AD++I+R+LDV HEHA KV Sbjct: 1 MQTAQRKSLIMLRWMMVASLALPVALFLVAAYVSYGSTCEEADRDIRRSLDVVHEHAEKV 60 Query: 61 FETIDRGLAEVTEVVRGMGDADIGAREKSLHERLRQVAVALPQVKSVWVFDANGRALVNS 120 FETIDR L+E+ E+VR + DA+I ARE++LH RLRQ++ LPQ+KS WVFD GR LV+S Sbjct: 61 FETIDRSLSEIDEIVRDLSDAEIKAREQALHGRLRQLSDTLPQMKSAWVFDVQGRPLVSS 120 Query: 121 LVQPAPDVDFSDRDYFRIHAQGDIGTYIGEVLTPRPPYQGSRFFSVGRRRNGDDGSFAGV 180 ++ PAPD+ F+DRDYF H + G+++G LTPRPP G+ FFSV RRR DG F GV Sbjct: 121 MIYPAPDMIFADRDYFSAHVTTNAGSFVGAALTPRPPDHGAAFFSVSRRRQSADGRFTGV 180 Query: 181 IQVSVLPEYFENFYARIGREPGSFLALIRTDGAVLAHFPAVNRDVRFEPSGPLGRQIVAN 240 IQ SVLP+YFE+FYARIGR PGS+ AL R DG VLA FPA R +GP + Sbjct: 181 IQASVLPDYFEHFYARIGRAPGSYFALRRFDGLVLARFPAAQRS-----AGPPPNDV--- 232 Query: 241 PEAGA-----MTIHSPADGIERRMRYQRLAGYPVYVSAGLETSVIQSRWMSTMAQHLIFG 295 P A A +T SP DG+ERR+ YQRLAG+PVYVSAGLET+ I+ RW+ TM +HLIFG Sbjct: 233 PAAAADTEQLVTETSPIDGLERRVGYQRLAGFPVYVSAGLETATIRDRWLGTMGRHLIFG 292 Query: 296 IPATALLFGLLALAFRRTQRLQEEALRRIEAEEALRHGQRLEALG 340 IPATALL LA+A RRT+R EA RR+EAE+ALRHGQR+EALG Sbjct: 293 IPATALLVVFLAMARRRTERFYIEAARRLEAEDALRHGQRMEALG 337 >ref|YP_533069.1| periplasmic sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB18] gb|ABD88750.1| periplasmic sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB18] Length = 702 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 178/337 (52%), Positives = 248/337 (73%) Query: 4 AQRNSLRLLQWMMAAALALPLALFVFASAMSWISTSEAADQEIQRTLDVAHEHALKVFET 63 AQR+S+RLL+ ++ A++ LP ALF +AS + + + + AD++I +T DV EHALKVFE+ Sbjct: 4 AQRDSIRLLRGILVASVVLPTALFCYASWLGYHNITTIADRQIDQTRDVITEHALKVFES 63 Query: 64 IDRGLAEVTEVVRGMGDADIGAREKSLHERLRQVAVALPQVKSVWVFDANGRALVNSLVQ 123 ++R +AE+TE+VR D I E +LH+RL++++ QVKS+W+FD++GRAL NSL Sbjct: 64 VERSMAEITEIVRDQSDGQIMDSEAALHQRLKRISAGSEQVKSLWIFDSHGRALANSLSH 123 Query: 124 PAPDVDFSDRDYFRIHAQGDIGTYIGEVLTPRPPYQGSRFFSVGRRRNGDDGSFAGVIQV 183 PAP +DFSDRDYF H + DIGTYIGEVL PRPPY G+ FF V RRR DGSFAGVIQ Sbjct: 124 PAPPIDFSDRDYFSAHGERDIGTYIGEVLRPRPPYGGAPFFGVSRRRPSSDGSFAGVIQA 183 Query: 184 SVLPEYFENFYARIGREPGSFLALIRTDGAVLAHFPAVNRDVRFEPSGPLGRQIVANPEA 243 S+LP+YFE F+A+I RE GS+ AL+R DG++LA PA+ R+V + LG+ ++A Sbjct: 184 SLLPDYFEGFFAKISREFGSYAALVRNDGSILARQPAIGRNVSVGANSDLGKLMLARNVE 243 Query: 244 GAMTIHSPADGIERRMRYQRLAGYPVYVSAGLETSVIQSRWMSTMAQHLIFGIPATALLF 303 G +T+ S DG+ER++ Y+RL+ +PVYV +G+ET I+++W++ M ++IFG+PATA L Sbjct: 244 GTLTMTSAVDGLERKLAYRRLSNFPVYVVSGMETRAIRAKWLAMMGSYMIFGLPATAALI 303 Query: 304 GLLALAFRRTQRLQEEALRRIEAEEALRHGQRLEALG 340 L+ LA RTQRL EEA RR AE+AL+ QRLE+LG Sbjct: 304 ALVMLALTRTQRLYEEASRRESAEQALKQAQRLESLG 340 >ref|YP_004109694.1| integral membrane sensor hybrid histidine kinase [Rhodopseudomonas palustris DX-1] gb|ADU44961.1| integral membrane sensor hybrid histidine kinase [Rhodopseudomonas palustris DX-1] Length = 707 Score = 367 bits (942), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 180/339 (53%), Positives = 244/339 (71%), Gaps = 1/339 (0%) Query: 3 TAQRNSLRLLQWMMAAALALPLALFVFASAMSWISTSEAADQEIQRTLDVAHEHALKVFE 62 TAQR+SLRLL+ ++ A++ LP+ALF +A+ +S+ + AD++I +T D+ EHALK+FE Sbjct: 3 TAQRDSLRLLRAILIASVVLPVALFSYAAWLSYRTNEANADRQIDKTRDIITEHALKIFE 62 Query: 63 TIDRGLAEVTEVVRGMGDADIGAREKSLHERLRQVAVALPQVKSVWVFDANGRALVNSLV 122 ++ R +AE E+VRGM D DI A E +LHERL+++A Q+KS+W+FD+ GR LVN++ Sbjct: 63 SVQRSMAETAEIVRGMSDEDIRAAEPALHERLKRLAGGSEQIKSMWIFDSTGRPLVNTMQ 122 Query: 123 QPAPDVDFSDRDYFRIHAQGDIGTYIGEVLTPRPPYQGSRFFSVGRRRNGDDGSFAGVIQ 182 P+P D SDRDYFR H DIG Y+G VL PRPP+ G+ FFSV RRRN DG FAGVIQ Sbjct: 123 FPSPRPDLSDRDYFRAHRDQDIGLYVGRVLQPRPPFDGAPFFSVSRRRNTPDGRFAGVIQ 182 Query: 183 VSVLPEYFENFYARIGREPGSFLALIRTDGAVLAHFPAVN-RDVRFEPSGPLGRQIVANP 241 SVLP+YFE FYA++GR+ GSF +L+R DGA+LA P ++ DV +P G +G+ I Sbjct: 183 TSVLPDYFEGFYAKVGRDDGSFASLVREDGAILARMPEIDGSDVAVKPEGIVGQAIREGR 242 Query: 242 EAGAMTIHSPADGIERRMRYQRLAGYPVYVSAGLETSVIQSRWMSTMAQHLIFGIPATAL 301 G MT S DGIERR+ +++L PVYV AGLETS I+S W++ + +L+ G+PATA Sbjct: 243 SEGRMTTVSSLDGIERRVAFRKLPDLPVYVFAGLETSAIRSMWLAQIGAYLLVGLPATAA 302 Query: 302 LFGLLALAFRRTQRLQEEALRRIEAEEALRHGQRLEALG 340 L ++ LA RRTQ+L EEA RR+ AE AL+ QRLE+LG Sbjct: 303 LIAIVLLAMRRTQKLYEEADRRLVAENALKQAQRLESLG 341