BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0184.0102.p (272 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004750874.1| XRE family transcriptional regulator [Collim... 242 5e-62 ref|NP_485435.1| hypothetical protein alr1392 [Nostoc sp. PCC 71... 229 4e-58 ref|ZP_05127992.1| helix-turn-helix domain protein [gamma proteo... 208 9e-52 ref|ZP_07029911.1| transcriptional regulator, XRE family [Acidob... 207 2e-51 ref|YP_586891.1| transcriptional regulator [Cupriavidus metallid... 201 1e-49 >ref|YP_004750874.1| XRE family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK60051.1| Transcriptional regulator, XRE family [Collimonas fungivorans Ter331] Length = 303 Score = 242 bits (617), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 124/262 (47%), Positives = 180/262 (68%), Gaps = 8/262 (3%) Query: 6 DFAASLRWWRQRKGHSQLELAGRADISQRHLSFLELGRAAPSRDMVIRLAAALDVPLRQQ 65 DFA +LR+WR ++G+SQL L+ + ISQRH+SFLE GR+ PSR+++++L ALD+PLRQ+ Sbjct: 41 DFATALRYWRDKRGYSQLRLSAESHISQRHISFLESGRSQPSRELILKLGTALDIPLRQR 100 Query: 66 NALLVAAGFAPVWRQTDLAAPELAQIRYALDFILAQQEPFPAVVVDRHWNLLLANSGAGQ 125 N +L+AAGFAP +++ L+ PELA ++ ALDF+LAQQ P+PA+VVDR WNL+++N A Sbjct: 101 NVMLLAAGFAPAYQERKLSDPELAAVKQALDFMLAQQAPYPALVVDRLWNLVMSNGPAAM 160 Query: 126 LVELLVG-----PLAPGTAVNLADALVAPGVLRPYLTNWTEVAGYFVRSVEADAAADGTT 180 ++ L+ P+ P VN+ ++ P +R +L NW +V+ + ++ +A +DG Sbjct: 161 MIRWLLDMPDSQPI-PREGVNVLQLMLDPQAIRKHLVNWQDVSADLLHWIQREAMSDGPG 219 Query: 181 ATA-ELLKRLLAYDGVEAALAAPPGPTSG-PVLPMLFRKGDVSLQLFTTIATLGTPQDVT 238 + A LL++LLA G++AA P T P L M RK V L LFT+IAT+GTP DVT Sbjct: 220 SEATRLLEQLLALPGIKAASQTPNLDTRVLPFLAMTLRKDGVELNLFTSIATMGTPHDVT 279 Query: 239 LQELRIESFFPMDEETAQVFRN 260 + ELRIESFFP D TA F++ Sbjct: 280 VHELRIESFFPADAATAAWFKS 301 >ref|NP_485435.1| hypothetical protein alr1392 [Nostoc sp. PCC 7120] dbj|BAB73349.1| alr1392 [Nostoc sp. PCC 7120] Length = 290 Score = 229 bits (583), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 117/258 (45%), Positives = 165/258 (63%), Gaps = 8/258 (3%) Query: 7 FAASLRWWRQRKGHSQLELAGRADISQRHLSFLELGRAAPSRDMVIRLAAALDVPLRQQN 66 F L+ WR ++ SQL+LA +++SQRH+SFLE GRA PSRDM+++LA LDVPLR QN Sbjct: 11 FGNLLKHWRNQRSFSQLDLAVASEVSQRHISFLESGRAKPSRDMILQLATVLDVPLRYQN 70 Query: 67 ALLVAAGFAPVWRQTDLAAPELAQIRYALDFILAQQEPFPAVVVDRHWNLLLANSGAGQL 126 +L +AGFAP++ ++DL+A E+ IR ALDFIL QQEP+PA+V+DR+WNL+ +N+ A +L Sbjct: 71 MMLTSAGFAPIYSESDLSASEIEPIRKALDFILRQQEPYPALVMDRYWNLIQSNTAAQRL 130 Query: 127 VELLV------GPLAPGTAVNLADALVAPGVLRPYLTNWTEVAGYFVRSVEADAAADGTT 180 + LV L NL + P L+P++ NW E+A + ++ V + A+G + Sbjct: 131 INWLVPTQQLQNLLDSNGKFNLMRFMFHPQGLKPFIANWEEIANHLIQRVYRETLAEGCS 190 Query: 181 A-TAELLKRLLAYDGVEAALAAPPGPT-SGPVLPMLFRKGDVSLQLFTTIATLGTPQDVT 238 + L + L Y + T P+L + F K +SL F+TIATLGTP D+T Sbjct: 191 QDSINLFQELQTYPDIPRLWQISHTCTWQVPLLTLQFVKNGLSLSFFSTIATLGTPHDIT 250 Query: 239 LQELRIESFFPMDEETAQ 256 LQELRIES FP DE T + Sbjct: 251 LQELRIESLFPADEVTEE 268 >ref|ZP_05127992.1| helix-turn-helix domain protein [gamma proteobacterium NOR5-3] gb|EED32020.1| helix-turn-helix domain protein [gamma proteobacterium NOR5-3] Length = 265 Score = 208 bits (529), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 116/260 (44%), Positives = 159/260 (61%), Gaps = 2/260 (0%) Query: 2 SQQRDFAASLRWWRQRKGHSQLELAGRADISQRHLSFLELGRAAPSRDMVIRLAAALDVP 61 S Q F + WRQR+ SQL LA A ISQRHLS+LE GR+ PSR+MV+++A AL+VP Sbjct: 3 SMQTTFPTLCKQWRQRRHLSQLHLAETAAISQRHLSWLESGRSQPSREMVLKIAEALEVP 62 Query: 62 LRQQNALLVAAGFAPVWRQTDLAAPELAQIRYALDFILAQQEPFPAVVVDRHWNLLLANS 121 LR++N LL AAGFA +R++ LA P +A IR AL +L PFPAVVVDR WN ++AN Sbjct: 63 LRERNVLLHAAGFAAQYRESGLAEPHMAPIRGALLAVLEHHMPFPAVVVDRKWNRVMANR 122 Query: 122 GAGQLVELL-VGPLAPGTAVNLADALVAPGVLRPYLTNWTEVAGYFVRSVEADAAADGTT 180 A L L P+ NLA A +AP LR Y++NW E F++ + ++A A G Sbjct: 123 AADGLFTLAGADPVGAAEPFNLAAATLAPEGLRRYISNWEEALPLFIQRLRSEALASGQA 182 Query: 181 ATAELLKRLLAYDGVEAALAAPPGPTSGPVLPMLFRKGDVSLQLFTTIATLGTPQDVTLQ 240 + ++ L+ G + P P PV+P+ + L LFT ++T GTPQD+T Sbjct: 183 SIIAHVEALIRSAGELPSTPGTPEPLL-PVMPLELNIDGLRLSLFTVMSTFGTPQDITTD 241 Query: 241 ELRIESFFPMDEETAQVFRN 260 ELRIE+F+P+D+ T+ FR Sbjct: 242 ELRIEAFYPVDDATSTFFRE 261 >ref|ZP_07029911.1| transcriptional regulator, XRE family [Acidobacterium sp. MP5ACTX8] gb|EFI57398.1| transcriptional regulator, XRE family [Acidobacterium sp. MP5ACTX8] Length = 258 Score = 207 bits (526), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 105/249 (42%), Positives = 157/249 (63%), Gaps = 3/249 (1%) Query: 4 QRDFAASLRWWRQRKGHSQLELAGRADISQRHLSFLELGRAAPSRDMVIRLAAALDVPLR 63 +++ LR+WR+++G SQL+L+ +SQRH+SF+E GR+ PSR++++ LA LDVPLR Sbjct: 12 EQELGDLLRYWRRQRGKSQLDLSLDTGVSQRHISFVESGRSVPSRELLLSLAKTLDVPLR 71 Query: 64 QQNALLVAAGFAPVWRQTDLAAPELAQIRYALDFILAQQEPFPAVVVDRHWNLLLANSGA 123 +QN LL+A+G+APV+ ++ APE+A + +D +L Q EP PA+V+DR+WN+L N + Sbjct: 72 EQNVLLLASGYAPVYLESTWDAPEMAVVTRVIDLMLRQHEPHPAIVMDRYWNVLKTNEAS 131 Query: 124 GQLVELLVGPLAPGTAVNLADALVAPGVLRPYLTNWTEVAGYFVRSVEADAAADGTTA-T 182 + V NL D + P +RP++ NW EVA ++ V +A T A T Sbjct: 132 ARFFGSFVNLSERPKPRNLLDLMFDPDGIRPFIENWDEVALGLLQRVYREAVGHVTDART 191 Query: 183 AELLKRLLAYDGVEAALAAPPGPTSGPVLPMLFRKGDVSLQLFTTIATLGTPQDVTLQEL 242 ELL L Y GVE + P + PVLP+ F +G + F+ I+T+G PQD+T QEL Sbjct: 192 IELLGHLRKYPGVEE--LSVPRKSEAPVLPITFVRGSERISYFSMISTVGLPQDITAQEL 249 Query: 243 RIESFFPMD 251 RIES FP++ Sbjct: 250 RIESMFPVE 258 >ref|YP_586891.1| transcriptional regulator [Cupriavidus metallidurans CH34] gb|ABF11622.1| putative transcriptional regulator [Cupriavidus metallidurans CH34] Length = 296 Score = 201 bits (510), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 120/283 (42%), Positives = 169/283 (59%), Gaps = 16/283 (5%) Query: 6 DFAASLRWWRQRKGHSQLELAGRADISQRHLSFLELGRAAPSRDMVIRLAAALDVPLRQQ 65 DF LR+WR ++G+SQL L+ A +SQRH+SFLE GRA PSR+MV+ LA L VPLRQ+ Sbjct: 13 DFPGLLRYWRGKRGYSQLALSLAAGVSQRHISFLESGRARPSREMVLALAERLGVPLRQR 72 Query: 66 NALLVAAGFAPVWRQTDLAAPELAQIRYALDFILAQQEPFPAVVVDRHWNLLLANSGAGQ 125 N LL+A+G+AP + + LA+P + +R+A+ ILA+QEP+PAVV+DR W+L+ AN + Sbjct: 73 NRLLLASGYAPAYSEHALASPPMQMVRHAIALILAKQEPYPAVVLDRFWHLVDANQAYRR 132 Query: 126 LVELLVGPLAP------GTAVNLADALVAPGVLRPYLTNWTEVAGYFVRSVEADAAADGT 179 +++ L+ P G +NL A+ P L P + N +V Y +R V + Sbjct: 133 MLDKLLQGRKPAMLDEGGGRLNLMLAVFDPKGLWPVIENARQVGRYLLRRVWQELQVQAQ 192 Query: 180 TATA-ELLKRLLAYD-------GVEAALAAPPGPTSGPVLPMLFRKGDVSLQLFTTIATL 231 TA E+L+R+ + GV P T PVLP+ G LF+T+ TL Sbjct: 193 DQTAREILRRIAEWHPDMVGPGGVLLVEDDPAEGTPPPVLPVALHAGRFRASLFSTLTTL 252 Query: 232 GTPQDVTLQELRIESFFPMDEETAQVFRNWSK--ANPAKAAQS 272 G PQDVTLQELRIE F+P D+ T VF ++ ANP A+ + Sbjct: 253 GIPQDVTLQELRIECFYPADDATKAVFEALAEVPANPLAASTN 295