BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0184.0101.p         (132 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_771689.1| AttM/AiiB family protein [Bradyrhizobium japoni...   238   2e-61
emb|CBJ40194.1| conserved hypothethical protein, AttM-like prote...   228   3e-58
ref|NP_522156.1| hypothetical protein RS03884 [Ralstonia solanac...   214   3e-54
gb|AAF22881.1| AttM-like protein [Bradyrhizobium japonicum]           197   6e-49
ref|YP_298322.1| beta-lactamase-like protein [Ralstonia eutropha...   120   7e-26

>ref|NP_771689.1| AttM/AiiB family protein [Bradyrhizobium japonicum USDA 110]
 dbj|BAC50314.1| AttM/AiiB family protein [Bradyrhizobium japonicum USDA 110]
          Length = 276

 Score =  238 bits (607), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 107/132 (81%), Positives = 123/132 (93%)

Query: 1   MLYVQKAEYEWPGANNAPRFEPEHPVTKLEGDRDVFGDGSVTILSTPGHTPGHQSLLVKL 60
           +LYVQKAEY+WPGANN PRF+P HPV +L GD+DVFGDGSVTILSTPGHTPGHQSLLVKL
Sbjct: 145 VLYVQKAEYDWPGANNEPRFKPSHPVEQLAGDKDVFGDGSVTILSTPGHTPGHQSLLVKL 204

Query: 61  PKTGAVVLTGDAVHFKDNWDNRRAPSMNASKEQTLASMQKIADTLTKEKAQLWINHDKAQ 120
           PKTGAV+L+GDAVHF+DNWDNRR PSMN +K+Q+ ASMQKIADTL++EKAQLWINHDKAQ
Sbjct: 205 PKTGAVILSGDAVHFRDNWDNRRVPSMNVNKDQSAASMQKIADTLSREKAQLWINHDKAQ 264

Query: 121 RDGLKLSPDFYD 132
           RD  K++P+FYD
Sbjct: 265 RDSQKMAPEFYD 276


>emb|CBJ40194.1| conserved hypothethical protein, AttM-like protein [Ralstonia
           solanacearum CMR15]
          Length = 280

 Score =  228 bits (580), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 102/132 (77%), Positives = 121/132 (91%)

Query: 1   MLYVQKAEYEWPGANNAPRFEPEHPVTKLEGDRDVFGDGSVTILSTPGHTPGHQSLLVKL 60
           ML VQKAEYEWPGA++APRF+P HPVT++EGD+DVFGDGSV ++STPGHTPGHQSLLVKL
Sbjct: 149 MLLVQKAEYEWPGADHAPRFKPSHPVTEIEGDKDVFGDGSVVLISTPGHTPGHQSLLVKL 208

Query: 61  PKTGAVVLTGDAVHFKDNWDNRRAPSMNASKEQTLASMQKIADTLTKEKAQLWINHDKAQ 120
           PKTGAVVL+GDAVHF+ NWDNRR PS+N  K++TLASMQ+IAD L +EKAQLWINHDKAQ
Sbjct: 209 PKTGAVVLSGDAVHFQSNWDNRRVPSINFDKDKTLASMQRIADLLAREKAQLWINHDKAQ 268

Query: 121 RDGLKLSPDFYD 132
           RD LK++P +Y+
Sbjct: 269 RDTLKMAPAYYE 280


>ref|NP_522156.1| hypothetical protein RS03884 [Ralstonia solanacearum GMI1000]
 emb|CAD17746.1| conserved hypothetical protein [Ralstonia solanacearum GMI1000]
          Length = 136

 Score =  214 bits (546), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 95/126 (75%), Positives = 116/126 (92%)

Query: 7   AEYEWPGANNAPRFEPEHPVTKLEGDRDVFGDGSVTILSTPGHTPGHQSLLVKLPKTGAV 66
           +EYEWPGAN+APRF+P+HPVT+LEGD+DVFGDGSV ++STPGHTPGHQSLLVKLPKTGA+
Sbjct: 11  SEYEWPGANHAPRFKPDHPVTELEGDKDVFGDGSVMLISTPGHTPGHQSLLVKLPKTGAL 70

Query: 67  VLTGDAVHFKDNWDNRRAPSMNASKEQTLASMQKIADTLTKEKAQLWINHDKAQRDGLKL 126
           VL+GDAVHF+ NWDNRR PS+N  +++T ASMQ+IAD L +EKAQLWINHDKAQRD LK+
Sbjct: 71  VLSGDAVHFQSNWDNRRVPSINFDQDKTRASMQRIADLLVREKAQLWINHDKAQRDTLKM 130

Query: 127 SPDFYD 132
           +P +Y+
Sbjct: 131 APAYYE 136


>gb|AAF22881.1| AttM-like protein [Bradyrhizobium japonicum]
          Length = 219

 Score =  197 bits (500), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 94/133 (70%), Positives = 109/133 (81%), Gaps = 1/133 (0%)

Query: 1   MLYVQKAEYEWPGANNAPRFEP-EHPVTKLEGDRDVFGDGSVTILSTPGHTPGHQSLLVK 59
           +LYVQKAEY+WP ANN P  +      +     R    DGSVTILSTPGHTPGHQSLLVK
Sbjct: 87  VLYVQKAEYDWPAANNEPALQAFASRRSSSRVTRTCSADGSVTILSTPGHTPGHQSLLVK 146

Query: 60  LPKTGAVVLTGDAVHFKDNWDNRRAPSMNASKEQTLASMQKIADTLTKEKAQLWINHDKA 119
           LPKTGAV+L+GDAVHF+DNWDNRR PSMN +K+Q+ ASMQKIADTL++EKAQLWINHDKA
Sbjct: 147 LPKTGAVILSGDAVHFRDNWDNRRVPSMNVNKDQSAASMQKIADTLSREKAQLWINHDKA 206

Query: 120 QRDGLKLSPDFYD 132
           QRD  K++P+FYD
Sbjct: 207 QRDSQKMAPEFYD 219


>ref|YP_298322.1| beta-lactamase-like protein [Ralstonia eutropha JMP134]
 gb|AAZ63478.1| Beta-lactamase-like protein [Ralstonia eutropha JMP134]
          Length = 299

 Score =  120 bits (301), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 63/144 (43%), Positives = 87/144 (60%), Gaps = 13/144 (9%)

Query: 2   LYVQKAEYEW---PGANNAPRFEPEHPVTKL----------EGDRDVFGDGSVTILSTPG 48
           + +Q+AEY W   P  +N    +      KL          +GD DV+GDGSV ++STPG
Sbjct: 156 VLMQRAEYSWIHSPNGSNENVNQLMALARKLLGTPKNLQLVDGDTDVYGDGSVVLISTPG 215

Query: 49  HTPGHQSLLVKLPKTGAVVLTGDAVHFKDNWDNRRAPSMNASKEQTLASMQKIADTLTKE 108
           HTPG Q+LLV L  +G V+L+GD VH + N++    PS+N   ++++ASM KI   +   
Sbjct: 216 HTPGSQALLVHLKNSGFVILSGDVVHLEGNFERSIVPSLNTDNQESVASMNKIRKLIETY 275

Query: 109 KAQLWINHDKAQRDGLKLSPDFYD 132
           KA L+INHDK Q D LKL P FY+
Sbjct: 276 KATLFINHDKKQSDQLKLIPAFYN 299