BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0184.0092.p (276 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_771701.1| RNase III [Bradyrhizobium japonicum USDA 110] >... 385 e-105 ref|YP_001240617.1| ribonuclease III [Bradyrhizobium sp. BTAi1] ... 385 e-105 ref|YP_486226.1| ribonuclease III [Rhodopseudomonas palustris Ha... 382 e-104 sp|O69161.2|RNC_BRAJA RecName: Full=Ribonuclease 3; AltName: Ful... 380 e-104 ref|YP_001206425.1| ribonuclease III (modular protein) [Bradyrhi... 379 e-103 >ref|NP_771701.1| RNase III [Bradyrhizobium japonicum USDA 110] dbj|BAC50326.1| RNase III [Bradyrhizobium japonicum USDA 110] Length = 273 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 194/256 (75%), Positives = 214/256 (83%), Gaps = 2/256 (0%) Query: 21 APTGEPSQXAAPKKRRSKAAKAAEEKAAIAGTEARIGYTFQDPALLTTAFTHVSALKPAT 80 AP GE KK+R++++KA A A EARIG++F DP LL THVSALK + Sbjct: 18 APDGEAVTKTPAKKKRARSSKAKGTDAN-AALEARIGHSFADPNLLMQGITHVSALK-SG 75 Query: 81 RNRADSYQRLEFLGDHVLGLIVSDMLFRSFPKADEGELSKRLADLVRKESCADVAKALGL 140 R R DSYQRLEFLGDHVLGL+VSDML+ +FP ADEGELSKRLA+LVRKESCADVAK+LGL Sbjct: 76 RKRGDSYQRLEFLGDHVLGLVVSDMLYHAFPNADEGELSKRLAELVRKESCADVAKSLGL 135 Query: 141 LEDIKLGMVKAVEGARLRKSVLGDICEAVIGAIFLDGGYEAARQFVERNWTERMHKLRRP 200 L+DIKLG V ARLRKSVLGDICEAVIGAIFLDGG+ AA +FV+RNWTERMHK RRP Sbjct: 136 LDDIKLGSVGPSADARLRKSVLGDICEAVIGAIFLDGGHAAAAEFVKRNWTERMHKPRRP 195 Query: 201 LRDPKTVLQEWAQGKGLPTPVYREVERTGPHHDPQFRVAVDLPGLASAEGLGGNKRAAEK 260 LRDPKTVLQEWAQGKGLPTPVYREVERTGPHHDPQFRVAVDLPGLA AEG+GG+KRAAEK Sbjct: 196 LRDPKTVLQEWAQGKGLPTPVYREVERTGPHHDPQFRVAVDLPGLAPAEGIGGSKRAAEK 255 Query: 261 AAASAMIEREGVGTND 276 AAS MIEREGVG + Sbjct: 256 VAASVMIEREGVGGGN 271 >ref|YP_001240617.1| ribonuclease III [Bradyrhizobium sp. BTAi1] gb|ABQ36711.1| RNAse III [Bradyrhizobium sp. BTAi1] Length = 368 Score = 385 bits (988), Expect = e-105, Method: Compositional matrix adjust. Identities = 191/224 (85%), Positives = 204/224 (91%), Gaps = 3/224 (1%) Query: 55 RIGYTFQDPALLTTAFTHVSALKPATRNRADSYQRLEFLGDHVLGLIVSDMLFRSFPKAD 114 RIG+ F DP+LL+TA THVSALK +++ R DSYQRLEFLGDHVLGLIVSDML+RSFP AD Sbjct: 145 RIGHHFADPSLLSTAVTHVSALK-SSKKRGDSYQRLEFLGDHVLGLIVSDMLYRSFPSAD 203 Query: 115 EGELSKRLADLVRKESCADVAKALGLLEDIKLGMVKAVEGARLRKSVLGDICEAVIGAIF 174 EGELSKRLADLVRKESCADVAK+LGLL+DIKLG V A GARLRKSVLGD+CEAVIGAIF Sbjct: 204 EGELSKRLADLVRKESCADVAKSLGLLDDIKLGAVGAGAGARLRKSVLGDVCEAVIGAIF 263 Query: 175 LDGGYEAARQFVERNWTERMHKLRRPLRDPKTVLQEWAQGKGLPTPVYREVERTGPHHDP 234 LDGGY AA FVERNWTERMHK RRPLRDPKTVLQEWAQGKGLPTPVYREVERTGPHHDP Sbjct: 264 LDGGYAAAAGFVERNWTERMHKPRRPLRDPKTVLQEWAQGKGLPTPVYREVERTGPHHDP 323 Query: 235 QFRVAVDLPGLASAEGLGGNKRAAEKAAASAMIEREGV--GTND 276 QFRVAVDLPGL SAEG+GG+KRAAEK AAS MIEREGV G+ND Sbjct: 324 QFRVAVDLPGLESAEGVGGSKRAAEKVAASVMIEREGVSGGSND 367 >ref|YP_486226.1| ribonuclease III [Rhodopseudomonas palustris HaA2] gb|ABD07315.1| RNAse III [Rhodopseudomonas palustris HaA2] Length = 271 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 195/267 (73%), Positives = 218/267 (81%), Gaps = 7/267 (2%) Query: 12 DDTAAINDPAPTGEPSQXAAPKKRRSKAAKAAEEKAAIAGTEARIGYTFQDPALLTTAFT 71 D +DPA + +P++ A +KRRSKA + KA E RIG++F DP+LL TA T Sbjct: 9 DSPPMASDPAGSEQPAEQPAGRKRRSKA----KSKAVAVAIEQRIGHSFADPSLLNTALT 64 Query: 72 HVSALKPATRNRADSYQRLEFLGDHVLGLIVSDMLFRSFPKADEGELSKRLADLVRKESC 131 HVSALK A RNRADSYQRLEFLGDHVLGL+VSDML+R+FP ADEGELSKRLADLVRKE+C Sbjct: 65 HVSALKSA-RNRADSYQRLEFLGDHVLGLVVSDMLYRAFPNADEGELSKRLADLVRKETC 123 Query: 132 ADVAKALGLLEDIKLGMVKAVEGARLRKSVLGDICEAVIGAIFLDGGYEAARQFVERNWT 191 ADVA++L L E +KLG V A GARLRKSVLGDICEAVIGA+FLDGGY AA +FV+RNWT Sbjct: 124 ADVARSLDLDEGVKLGTVGAGAGARLRKSVLGDICEAVIGAVFLDGGYPAAAEFVQRNWT 183 Query: 192 ERMHKLRRPLRDPKTVLQEWAQGKGLPTPVYREVERTGPHHDPQFRVAVDLPGLASAEGL 251 ERM K R LRDPKTVLQEWAQGKGLPTPVYREVERTGPHHDPQFRVAV LPGL AEG+ Sbjct: 184 ERMRKPTRSLRDPKTVLQEWAQGKGLPTPVYREVERTGPHHDPQFRVAVSLPGLDPAEGV 243 Query: 252 GGNKRAAEKAAASAMIEREGV--GTND 276 GG+KRAAEK AAS M+ REGV G ND Sbjct: 244 GGSKRAAEKVAASVMLAREGVSAGGND 270 >sp|O69161.2|RNC_BRAJA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III; Short=RNase III Length = 250 Score = 380 bits (977), Expect = e-104, Method: Compositional matrix adjust. Identities = 193/251 (76%), Positives = 212/251 (84%), Gaps = 5/251 (1%) Query: 27 SQXAAPKKR-RSKAAKAAEEKAAIAGTEARIGYTFQDPALLTTAFTHVSALKPATRNRAD 85 ++ A KKR RS AK + AA+ EARIG++F DP LL THVSALK + R R D Sbjct: 2 TKTPAKKKRARSSKAKGTDANAAL---EARIGHSFADPNLLMQGITHVSALK-SGRKRGD 57 Query: 86 SYQRLEFLGDHVLGLIVSDMLFRSFPKADEGELSKRLADLVRKESCADVAKALGLLEDIK 145 SYQRLEFLGDHVLGL+VSDML+ +FP ADEGELSKRLA+LVRKESCADVAK+LGLL+DIK Sbjct: 58 SYQRLEFLGDHVLGLVVSDMLYHAFPNADEGELSKRLAELVRKESCADVAKSLGLLDDIK 117 Query: 146 LGMVKAVEGARLRKSVLGDICEAVIGAIFLDGGYEAARQFVERNWTERMHKLRRPLRDPK 205 LG V ARLRKSVLGDICEAVIGAIFLDGG+ AA +FV+RNWTERMHK RRPLRDPK Sbjct: 118 LGSVGPSADARLRKSVLGDICEAVIGAIFLDGGHAAAAEFVKRNWTERMHKPRRPLRDPK 177 Query: 206 TVLQEWAQGKGLPTPVYREVERTGPHHDPQFRVAVDLPGLASAEGLGGNKRAAEKAAASA 265 TVLQEWAQGKGLPTPVYREVERTGPHHDPQFRVAVDLPGLA AEG+GG+KRAAEK AAS Sbjct: 178 TVLQEWAQGKGLPTPVYREVERTGPHHDPQFRVAVDLPGLAPAEGIGGSKRAAEKVAASV 237 Query: 266 MIEREGVGTND 276 MIEREGVG + Sbjct: 238 MIEREGVGGGN 248 >ref|YP_001206425.1| ribonuclease III (modular protein) [Bradyrhizobium sp. ORS 278] emb|CAL78204.1| ribonuclease III (modular protein) [Bradyrhizobium sp. ORS 278] Length = 357 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 189/224 (84%), Positives = 203/224 (90%), Gaps = 3/224 (1%) Query: 55 RIGYTFQDPALLTTAFTHVSALKPATRNRADSYQRLEFLGDHVLGLIVSDMLFRSFPKAD 114 RIG+ F DP+LL+TAFTHVSALK +++ R DSYQRLEFLGDHVLGLIVSDML+R+FP AD Sbjct: 134 RIGHRFADPSLLSTAFTHVSALK-SSKKRGDSYQRLEFLGDHVLGLIVSDMLYRAFPSAD 192 Query: 115 EGELSKRLADLVRKESCADVAKALGLLEDIKLGMVKAVEGARLRKSVLGDICEAVIGAIF 174 EGELSKRLADLVRKESCADVAK+LGLL+DIKLG V A GARLRKSVLGD+CEAVIGAIF Sbjct: 193 EGELSKRLADLVRKESCADVAKSLGLLDDIKLGAVGAGAGARLRKSVLGDVCEAVIGAIF 252 Query: 175 LDGGYEAARQFVERNWTERMHKLRRPLRDPKTVLQEWAQGKGLPTPVYREVERTGPHHDP 234 LDGGY AA FVERNWTERM K RRPLRDPKTVLQEWAQGKGLPTPVYREVERTGPHHDP Sbjct: 253 LDGGYTAAAGFVERNWTERMRKPRRPLRDPKTVLQEWAQGKGLPTPVYREVERTGPHHDP 312 Query: 235 QFRVAVDLPGLASAEGLGGNKRAAEKAAASAMIEREGV--GTND 276 QFRVAVDLPGL AEG+GG+KRAAEK AAS MIEREGV G+ND Sbjct: 313 QFRVAVDLPGLEPAEGVGGSKRAAEKVAASVMIEREGVSGGSND 356