BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0184.0085.p         (130 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001206430.1| DNA-directed RNA polymerase subunit omega [B...   254   3e-66
ref|NP_771706.1| DNA-directed RNA polymerase subunit omega [Brad...   253   6e-66
ref|YP_577508.1| DNA-directed RNA polymerase subunit omega [Nitr...   246   6e-64
ref|YP_781944.1| DNA-directed RNA polymerase subunit omega [Rhod...   233   6e-60
ref|ZP_08630219.1| DNA-directed RNA polymerase omega subunit [Br...   231   4e-59

>ref|YP_001206430.1| DNA-directed RNA polymerase subunit omega [Bradyrhizobium sp. ORS
           278]
 ref|YP_001240622.1| DNA-directed RNA polymerase subunit omega [Bradyrhizobium sp.
           BTAi1]
 sp|A5EKM2.1|RPOZ_BRASB RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
           omega subunit; AltName: Full=RNA polymerase omega
           subunit; AltName: Full=Transcriptase subunit omega
 sp|A4YWD3.1|RPOZ_BRASO RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
           omega subunit; AltName: Full=RNA polymerase omega
           subunit; AltName: Full=Transcriptase subunit omega
 emb|CAL78209.1| RNA polymerase omega subunit [Bradyrhizobium sp. ORS 278]
 gb|ABQ36716.1| DNA-directed RNA polymerase subunit omega [Bradyrhizobium sp.
           BTAi1]
          Length = 130

 Score =  254 bits (649), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 128/130 (98%), Positives = 130/130 (100%)

Query: 1   MARVTVEDCIDKVDNRFDLVLLAAHRARMISSGSQLTVDRDNDKNPVVSLREIADSTISP 60
           MARVTVEDCIDKVDNRFDLVLLAAHRARMISSGSQLT+DRDNDKNPVV+LREIADSTISP
Sbjct: 1   MARVTVEDCIDKVDNRFDLVLLAAHRARMISSGSQLTIDRDNDKNPVVALREIADSTISP 60

Query: 61  EDLKEELVHSLQKFVEVDEPEPDTVPLIGSAGASVDADDTEVAVERMTEEELLKGLEGLA 120
           EDLKEELVHSLQKFVEVDEPEPDTVPLIGSAGASVDADDTEVAVERMTEEELLKGLEGLA
Sbjct: 61  EDLKEELVHSLQKFVEVDEPEPDTVPLIGSAGASVDADDTEVAVERMTEEELLKGLEGLA 120

Query: 121 PPEEQPEEDE 130
           PPEEQPEEDE
Sbjct: 121 PPEEQPEEDE 130


>ref|NP_771706.1| DNA-directed RNA polymerase subunit omega [Bradyrhizobium japonicum
           USDA 110]
 sp|Q9RH70.2|RPOZ_BRAJA RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
           omega subunit; AltName: Full=RNA polymerase omega
           subunit; AltName: Full=Transcriptase subunit omega
 dbj|BAC50331.1| RNA polymerase omega subunit [Bradyrhizobium japonicum USDA 110]
          Length = 130

 Score =  253 bits (646), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 128/130 (98%), Positives = 130/130 (100%)

Query: 1   MARVTVEDCIDKVDNRFDLVLLAAHRARMISSGSQLTVDRDNDKNPVVSLREIADSTISP 60
           MARVTVEDCIDKVDNRFDLVLLAAHRARMISSGSQLTVDRDNDKNPVVSLREIAD+TISP
Sbjct: 1   MARVTVEDCIDKVDNRFDLVLLAAHRARMISSGSQLTVDRDNDKNPVVSLREIADTTISP 60

Query: 61  EDLKEELVHSLQKFVEVDEPEPDTVPLIGSAGASVDADDTEVAVERMTEEELLKGLEGLA 120
           EDL+EELVHSLQKFVEVDEPEPDTVPLIGSAGASVDADDTEVAVERMTEEELLKGLEGLA
Sbjct: 61  EDLREELVHSLQKFVEVDEPEPDTVPLIGSAGASVDADDTEVAVERMTEEELLKGLEGLA 120

Query: 121 PPEEQPEEDE 130
           PPEEQPEEDE
Sbjct: 121 PPEEQPEEDE 130


>ref|YP_577508.1| DNA-directed RNA polymerase subunit omega [Nitrobacter hamburgensis
           X14]
 sp|Q1QL49.1|RPOZ_NITHX RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
           omega subunit; AltName: Full=RNA polymerase omega
           subunit; AltName: Full=Transcriptase subunit omega
 gb|ABE63048.1| DNA-directed RNA polymerase subunit omega [Nitrobacter hamburgensis
           X14]
          Length = 130

 Score =  246 bits (629), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 124/130 (95%), Positives = 128/130 (98%)

Query: 1   MARVTVEDCIDKVDNRFDLVLLAAHRARMISSGSQLTVDRDNDKNPVVSLREIADSTISP 60
           MARVTVEDCIDKVDNRFDLVLLAAHRARMISSGSQLT+DRDNDKNPVVSLREIA+ TISP
Sbjct: 1   MARVTVEDCIDKVDNRFDLVLLAAHRARMISSGSQLTIDRDNDKNPVVSLREIAEQTISP 60

Query: 61  EDLKEELVHSLQKFVEVDEPEPDTVPLIGSAGASVDADDTEVAVERMTEEELLKGLEGLA 120
           ED++EELVHSLQKFVEVDEPEPDTVPLIGSAGASVDADDTEVAVERMTEEELLKGLEGLA
Sbjct: 61  EDMREELVHSLQKFVEVDEPEPDTVPLIGSAGASVDADDTEVAVERMTEEELLKGLEGLA 120

Query: 121 PPEEQPEEDE 130
           P EEQPEEDE
Sbjct: 121 PREEQPEEDE 130


>ref|YP_781944.1| DNA-directed RNA polymerase subunit omega [Rhodopseudomonas
           palustris BisA53]
 sp|Q07M70.1|RPOZ_RHOP5 RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP
           omega subunit; AltName: Full=RNA polymerase omega
           subunit; AltName: Full=Transcriptase subunit omega
 gb|ABJ06964.1| DNA-directed RNA polymerase, omega subunit [Rhodopseudomonas
           palustris BisA53]
          Length = 130

 Score =  233 bits (595), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 117/120 (97%), Positives = 119/120 (99%)

Query: 1   MARVTVEDCIDKVDNRFDLVLLAAHRARMISSGSQLTVDRDNDKNPVVSLREIADSTISP 60
           MARVTVEDCIDKVDNRFDLVLLAAHRARMISSGSQLT+DRDNDKNPVVSLREIAD TISP
Sbjct: 1   MARVTVEDCIDKVDNRFDLVLLAAHRARMISSGSQLTIDRDNDKNPVVSLREIADQTISP 60

Query: 61  EDLKEELVHSLQKFVEVDEPEPDTVPLIGSAGASVDADDTEVAVERMTEEELLKGLEGLA 120
           EDL+EELVHSLQKFVEVDEPEPDTVPLIGSAGASVDADDTEVAVERMTEEELLKGLEGLA
Sbjct: 61  EDLREELVHSLQKFVEVDEPEPDTVPLIGSAGASVDADDTEVAVERMTEEELLKGLEGLA 120


>ref|ZP_08630219.1| DNA-directed RNA polymerase omega subunit [Bradyrhizobiaceae
           bacterium SG-6C]
 gb|EGP07092.1| DNA-directed RNA polymerase omega subunit [Bradyrhizobiaceae
           bacterium SG-6C]
          Length = 130

 Score =  231 bits (588), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 117/120 (97%), Positives = 119/120 (99%)

Query: 1   MARVTVEDCIDKVDNRFDLVLLAAHRARMISSGSQLTVDRDNDKNPVVSLREIADSTISP 60
           MARVTVEDCIDKVDNRFDLVLLAAHRARMISSGS LTVDRDNDKNPVVSLREIAD+TISP
Sbjct: 1   MARVTVEDCIDKVDNRFDLVLLAAHRARMISSGSPLTVDRDNDKNPVVSLREIADTTISP 60

Query: 61  EDLKEELVHSLQKFVEVDEPEPDTVPLIGSAGASVDADDTEVAVERMTEEELLKGLEGLA 120
           EDL+EELVHSLQKFVEVDEPEPDTVPLIGSAGASVDADDTEVAVERMTEEELLKGLEGLA
Sbjct: 61  EDLREELVHSLQKFVEVDEPEPDTVPLIGSAGASVDADDTEVAVERMTEEELLKGLEGLA 120