BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0184.0084.p         (210 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_771707.1| hypothetical protein blr5067 [Bradyrhizobium ja...   401   e-110
ref|YP_486220.1| hypothetical protein RPB_2606 [Rhodopseudomonas...   398   e-109
ref|YP_569775.1| hypothetical protein RPD_2645 [Rhodopseudomonas...   397   e-109
ref|YP_532502.1| hypothetical protein RPC_2633 [Rhodopseudomonas...   395   e-108
ref|ZP_08630220.1| protein of unknown function DUF88 [Bradyrhizo...   394   e-108

>ref|NP_771707.1| hypothetical protein blr5067 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC50332.1| blr5067 [Bradyrhizobium japonicum USDA 110]
          Length = 214

 Score =  401 bits (1031), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 200/215 (93%), Positives = 205/215 (95%), Gaps = 6/215 (2%)

Query: 1   MSSPVSNKIALFIDGANLYATAKTLGFDIDYKRLLKEFQSRGTLLRAFYYTAIIEDQEYS 60
           MS   +NKIALFIDGANLYATAKTLGFDIDYKRLLKEFQSRGTLLRAFYYTAIIEDQEYS
Sbjct: 1   MSPSPTNKIALFIDGANLYATAKTLGFDIDYKRLLKEFQSRGTLLRAFYYTAIIEDQEYS 60

Query: 61  SIRPLIDWLDYNGYTVVTKATKEFIDASGRRKVKGNMDIELAVDAMELAEHIDQMILFSG 120
           SIRPLIDWLDYNGYTVVTKATKEFIDASGRRKVKGNMDIELAVDAMELAEHIDQM+LFSG
Sbjct: 61  SIRPLIDWLDYNGYTVVTKATKEFIDASGRRKVKGNMDIELAVDAMELAEHIDQMVLFSG 120

Query: 121 DGDFRSLVEAVQRRGVRVTVISTIASQPPMIADELRRQADVFTDLVELQSKLGRDPSERP 180
           DGDFRSLVEAVQRRGVRVTV+STIASQPPMIADELRRQADVFTDLVELQSKLGRDPSERP
Sbjct: 121 DGDFRSLVEAVQRRGVRVTVVSTIASQPPMIADELRRQADVFTDLVELQSKLGRDPSERP 180

Query: 181 AP-----REPRHHSPQFLQRATTMAPRGADDDFDE 210
           AP     RE RHH+PQFLQRATTMAPRG DDDF+E
Sbjct: 181 APRDRGEREARHHAPQFLQRATTMAPRG-DDDFEE 214


>ref|YP_486220.1| hypothetical protein RPB_2606 [Rhodopseudomonas palustris HaA2]
 gb|ABD07309.1| Protein of unknown function DUF88 [Rhodopseudomonas palustris HaA2]
          Length = 209

 Score =  398 bits (1022), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 192/210 (91%), Positives = 203/210 (96%), Gaps = 1/210 (0%)

Query: 1   MSSPVSNKIALFIDGANLYATAKTLGFDIDYKRLLKEFQSRGTLLRAFYYTAIIEDQEYS 60
           MS+P SNKIALFIDGANLYATAKTLGFDIDYKRLLKEF SRGTL+RAFYYTAIIEDQEYS
Sbjct: 1   MSTPASNKIALFIDGANLYATAKTLGFDIDYKRLLKEFHSRGTLIRAFYYTAIIEDQEYS 60

Query: 61  SIRPLIDWLDYNGYTVVTKATKEFIDASGRRKVKGNMDIELAVDAMELAEHIDQMILFSG 120
           SIRPLIDWLDYNGYTVVTKATKEFIDASGRRKVKGNMDIELAVDAMELAEHIDQM+LFSG
Sbjct: 61  SIRPLIDWLDYNGYTVVTKATKEFIDASGRRKVKGNMDIELAVDAMELAEHIDQMVLFSG 120

Query: 121 DGDFRSLVEAVQRRGVRVTVISTIASQPPMIADELRRQADVFTDLVELQSKLGRDPSERP 180
           DGDFRSLVEAVQRRGVRVTVISTI+SQPPMIADELRRQADVFTDLVELQSK+GRDP++RP
Sbjct: 121 DGDFRSLVEAVQRRGVRVTVISTISSQPPMIADELRRQADVFTDLVELQSKIGRDPADRP 180

Query: 181 APREPRHHSPQFLQRATTMAPRGADDDFDE 210
            PREPR H+PQFLQR+  MAPRG DDDF++
Sbjct: 181 PPREPR-HTPQFLQRSAAMAPRGGDDDFED 209


>ref|YP_569775.1| hypothetical protein RPD_2645 [Rhodopseudomonas palustris BisB5]
 gb|ABE39874.1| protein of unknown function DUF88 [Rhodopseudomonas palustris
           BisB5]
          Length = 228

 Score =  397 bits (1020), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 192/210 (91%), Positives = 203/210 (96%), Gaps = 1/210 (0%)

Query: 1   MSSPVSNKIALFIDGANLYATAKTLGFDIDYKRLLKEFQSRGTLLRAFYYTAIIEDQEYS 60
           MS+  SNKIALFIDGANLYATAKTLGFDIDYKRLLKEFQSRGTL+RAFYYTAIIEDQEYS
Sbjct: 20  MSTSASNKIALFIDGANLYATAKTLGFDIDYKRLLKEFQSRGTLIRAFYYTAIIEDQEYS 79

Query: 61  SIRPLIDWLDYNGYTVVTKATKEFIDASGRRKVKGNMDIELAVDAMELAEHIDQMILFSG 120
           SIRPLIDWLDYNGYTVVTKATKEFIDASGRRKVKGNMDIELAVDAMELAEHIDQM+LFSG
Sbjct: 80  SIRPLIDWLDYNGYTVVTKATKEFIDASGRRKVKGNMDIELAVDAMELAEHIDQMVLFSG 139

Query: 121 DGDFRSLVEAVQRRGVRVTVISTIASQPPMIADELRRQADVFTDLVELQSKLGRDPSERP 180
           DGDFRSLVEAVQRRGVRVTVISTI+SQPPMIADELRRQAD FTDLVELQSK+GRDP++RP
Sbjct: 140 DGDFRSLVEAVQRRGVRVTVISTISSQPPMIADELRRQADTFTDLVELQSKIGRDPADRP 199

Query: 181 APREPRHHSPQFLQRATTMAPRGADDDFDE 210
            PREPR H+PQFLQR+  MAPRGADDDF++
Sbjct: 200 PPREPR-HAPQFLQRSVAMAPRGADDDFED 228


>ref|YP_532502.1| hypothetical protein RPC_2633 [Rhodopseudomonas palustris BisB18]
 gb|ABD88183.1| protein of unknown function DUF88 [Rhodopseudomonas palustris
           BisB18]
          Length = 208

 Score =  395 bits (1014), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/208 (92%), Positives = 202/208 (97%), Gaps = 1/208 (0%)

Query: 3   SPVSNKIALFIDGANLYATAKTLGFDIDYKRLLKEFQSRGTLLRAFYYTAIIEDQEYSSI 62
           S  S+KIALFIDGANLYATAKTLGFDIDYKRLLKEFQSRGTL+RAFYYTAIIEDQEYSSI
Sbjct: 2   SSASSKIALFIDGANLYATAKTLGFDIDYKRLLKEFQSRGTLVRAFYYTAIIEDQEYSSI 61

Query: 63  RPLIDWLDYNGYTVVTKATKEFIDASGRRKVKGNMDIELAVDAMELAEHIDQMILFSGDG 122
           RPLIDWLDYNGYTVVTKATKEFIDASGRRKVKGNMDIELAVDAMELAEHIDQM+LFSGDG
Sbjct: 62  RPLIDWLDYNGYTVVTKATKEFIDASGRRKVKGNMDIELAVDAMELAEHIDQMVLFSGDG 121

Query: 123 DFRSLVEAVQRRGVRVTVISTIASQPPMIADELRRQADVFTDLVELQSKLGRDPSERPAP 182
           DFRSLVEAVQRRGVRVTVISTI+SQPPMIADELRRQADVFTDLVELQSKLGRDP+ERPAP
Sbjct: 122 DFRSLVEAVQRRGVRVTVISTISSQPPMIADELRRQADVFTDLVELQSKLGRDPAERPAP 181

Query: 183 REPRHHSPQFLQRATTMAPRGADDDFDE 210
           REPR H+PQFLQRATT APR  DD+F++
Sbjct: 182 REPR-HTPQFLQRATTTAPRVEDDEFED 208


>ref|ZP_08630220.1| protein of unknown function DUF88 [Bradyrhizobiaceae bacterium
           SG-6C]
 gb|EGP07093.1| protein of unknown function DUF88 [Bradyrhizobiaceae bacterium
           SG-6C]
          Length = 210

 Score =  394 bits (1013), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 194/207 (93%), Positives = 202/207 (97%), Gaps = 3/207 (1%)

Query: 6   SNKIALFIDGANLYATAKTLGFDIDYKRLLKEFQSRGTLLRAFYYTAIIEDQEYSSIRPL 65
           +NKIALFIDGANLYATAKTLGFDIDYKRLL EFQSRGTL+RAFYYTAIIEDQEYSSIRPL
Sbjct: 5   TNKIALFIDGANLYATAKTLGFDIDYKRLLLEFQSRGTLVRAFYYTAIIEDQEYSSIRPL 64

Query: 66  IDWLDYNGYTVVTKATKEFIDASGRRKVKGNMDIELAVDAMELAEHIDQMILFSGDGDFR 125
           IDWLDYNGYTVVTKATKEFIDASGRRKVKGNMDIELAVDAMELAEHIDQM+LFSGDGDFR
Sbjct: 65  IDWLDYNGYTVVTKATKEFIDASGRRKVKGNMDIELAVDAMELAEHIDQMVLFSGDGDFR 124

Query: 126 SLVEAVQRRGVRVTVISTIASQPPMIADELRRQADVFTDLVELQSKLGRDPSERPAPREP 185
           SLVEAVQRRGVRVTVISTIASQPPMIADELRRQADVFTDL++LQSKLGRDPSERPAPREP
Sbjct: 125 SLVEAVQRRGVRVTVISTIASQPPMIADELRRQADVFTDLIQLQSKLGRDPSERPAPREP 184

Query: 186 RHHSPQFLQRAT--TMAPRGADDDFDE 210
           R H+PQFLQRAT  TMAPRG DD+FD+
Sbjct: 185 RQHTPQFLQRATTSTMAPRG-DDEFDD 210