BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0184.0083.p (176 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAF04324.1| unknown [Bradyrhizobium japonicum] 293 7e-78 ref|NP_771708.1| hypothetical protein blr5068 [Bradyrhizobium ja... 293 9e-78 ref|YP_004109133.1| uracil-DNA glycosylase superfamily protein [... 292 2e-77 ref|NP_948032.1| Uracil-DNA glycosylase superfamily [Rhodopseudo... 291 2e-77 ref|YP_001991948.1| uracil-DNA glycosylase superfamily [Rhodopse... 290 5e-77 >gb|AAF04324.1| unknown [Bradyrhizobium japonicum] Length = 283 Score = 293 bits (750), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 138/172 (80%), Positives = 151/172 (87%) Query: 4 FGDQNARLLIVGLAPGLQGANRTGRPFTGDYAGDLLYATLLEYGFASGVYQARPDDGLKL 63 FGD ARLLIVGLAPG+QGANRTGRPFTGDYAGDLLYATLLEYGFA G YQARPDDGLKL Sbjct: 111 FGDVKARLLIVGLAPGMQGANRTGRPFTGDYAGDLLYATLLEYGFAKGAYQARPDDGLKL 170 Query: 64 VDARISNAVRCVPPQNKPLPAEINTCRQFLRATIATMPKLRAIVLLGRIAHESTLKALDV 123 VD RI+NAV CVPPQNKPLPAEINTCRQFL A +ATMP LRAIV LGRIAH++ LK L++ Sbjct: 171 VDCRIANAVHCVPPQNKPLPAEINTCRQFLAANLATMPNLRAIVALGRIAHDTVLKPLNL 230 Query: 124 RLAAAPFVHGAVHSAGKFKLYDSYHCSRYNTNTGVLTTDMFRKVFATVRKEL 175 + + APF HGAVH AG F+LYDSYHCSRYNTNTGVLT DMFR VF+ V+ +L Sbjct: 231 KGSQAPFGHGAVHQAGAFRLYDSYHCSRYNTNTGVLTPDMFRSVFSKVKADL 282 >ref|NP_771708.1| hypothetical protein blr5068 [Bradyrhizobium japonicum USDA 110] dbj|BAC50333.1| blr5068 [Bradyrhizobium japonicum USDA 110] Length = 224 Score = 293 bits (749), Expect = 9e-78, Method: Compositional matrix adjust. Identities = 139/175 (79%), Positives = 152/175 (86%) Query: 1 VESFGDQNARLLIVGLAPGLQGANRTGRPFTGDYAGDLLYATLLEYGFASGVYQARPDDG 60 V FGD ARLLIVGLAPG+QGANRTGRPFTGDYAGDLLYATLLEYGFA G YQARPDDG Sbjct: 49 VAPFGDVKARLLIVGLAPGMQGANRTGRPFTGDYAGDLLYATLLEYGFAKGAYQARPDDG 108 Query: 61 LKLVDARISNAVRCVPPQNKPLPAEINTCRQFLRATIATMPKLRAIVLLGRIAHESTLKA 120 LKLVD RI+NAV CVPPQNKPLPAEINTCRQFL A +ATMP LRAIV LGRIAH++ LK Sbjct: 109 LKLVDCRIANAVHCVPPQNKPLPAEINTCRQFLAANLATMPNLRAIVALGRIAHDTVLKP 168 Query: 121 LDVRLAAAPFVHGAVHSAGKFKLYDSYHCSRYNTNTGVLTTDMFRKVFATVRKEL 175 L+++ + APF HGAVH AG F+LYDSYHCSRYNTNTGVLT DMFR VF+ V+ +L Sbjct: 169 LNLKGSQAPFGHGAVHQAGAFRLYDSYHCSRYNTNTGVLTPDMFRSVFSKVKADL 223 >ref|YP_004109133.1| uracil-DNA glycosylase superfamily protein [Rhodopseudomonas palustris DX-1] gb|ADU44400.1| Uracil-DNA glycosylase superfamily [Rhodopseudomonas palustris DX-1] Length = 224 Score = 292 bits (747), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 143/175 (81%), Positives = 152/175 (86%) Query: 1 VESFGDQNARLLIVGLAPGLQGANRTGRPFTGDYAGDLLYATLLEYGFASGVYQARPDDG 60 V SFG +A LLIVGLAPGLQGANRTGRPFTGDYAGDLLYATL+EYGFASG YQARPDD Sbjct: 48 VSSFGGTDASLLIVGLAPGLQGANRTGRPFTGDYAGDLLYATLIEYGFASGQYQARPDDS 107 Query: 61 LKLVDARISNAVRCVPPQNKPLPAEINTCRQFLRATIATMPKLRAIVLLGRIAHESTLKA 120 L+LV RISNAVRCVPPQNKPLP EINTCR+FL ATI MPKLRAIVLLGRIAH+STLKA Sbjct: 108 LRLVGCRISNAVRCVPPQNKPLPVEINTCRRFLIATIDAMPKLRAIVLLGRIAHDSTLKA 167 Query: 121 LDVRLAAAPFVHGAVHSAGKFKLYDSYHCSRYNTNTGVLTTDMFRKVFATVRKEL 175 L +R A APF HGAVH AG+ +LYDSYHCSRYNTNTGVLT MFR VFA VR +L Sbjct: 168 LGLRAAQAPFGHGAVHEAGRLRLYDSYHCSRYNTNTGVLTPKMFRDVFARVRDDL 222 >ref|NP_948032.1| Uracil-DNA glycosylase superfamily [Rhodopseudomonas palustris CGA009] emb|CAE28131.1| possible uracil-DNA glycosylase [Rhodopseudomonas palustris CGA009] Length = 224 Score = 291 bits (746), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 142/175 (81%), Positives = 153/175 (87%) Query: 1 VESFGDQNARLLIVGLAPGLQGANRTGRPFTGDYAGDLLYATLLEYGFASGVYQARPDDG 60 V SFG +A LLIVGLAPGLQGANRTGRPFTGDYAGDLLYATL++YGFA G YQARPDDG Sbjct: 48 VPSFGGADASLLIVGLAPGLQGANRTGRPFTGDYAGDLLYATLIDYGFAQGHYQARPDDG 107 Query: 61 LKLVDARISNAVRCVPPQNKPLPAEINTCRQFLRATIATMPKLRAIVLLGRIAHESTLKA 120 L+L+D RISNAVRCVPPQNKPLP EINTCR+FL ATI MPKLRAIVLLGRIAH+STLKA Sbjct: 108 LQLIDCRISNAVRCVPPQNKPLPLEINTCRRFLIATIEAMPKLRAIVLLGRIAHDSTLKA 167 Query: 121 LDVRLAAAPFVHGAVHSAGKFKLYDSYHCSRYNTNTGVLTTDMFRKVFATVRKEL 175 L +R A APF HGAVH AG+ +LYDSYHCSRYNTNTGVLT MFR VFA VR +L Sbjct: 168 LGLRAAQAPFGHGAVHDAGRLRLYDSYHCSRYNTNTGVLTPKMFRDVFARVRTDL 222 >ref|YP_001991948.1| uracil-DNA glycosylase superfamily [Rhodopseudomonas palustris TIE-1] gb|ACF01473.1| Uracil-DNA glycosylase superfamily [Rhodopseudomonas palustris TIE-1] Length = 224 Score = 290 bits (742), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 142/175 (81%), Positives = 152/175 (86%) Query: 1 VESFGDQNARLLIVGLAPGLQGANRTGRPFTGDYAGDLLYATLLEYGFASGVYQARPDDG 60 V SFG +A LLIVGLAPGLQGANRTGRPFTGDYAGDLLYATL++YGFA G YQARPDDG Sbjct: 48 VPSFGGADASLLIVGLAPGLQGANRTGRPFTGDYAGDLLYATLIDYGFARGHYQARPDDG 107 Query: 61 LKLVDARISNAVRCVPPQNKPLPAEINTCRQFLRATIATMPKLRAIVLLGRIAHESTLKA 120 L+L D RISNAVRCVPPQNKPLP EINTCR+FL ATI MPKLRAIVLLGRIAH+STLKA Sbjct: 108 LQLTDCRISNAVRCVPPQNKPLPIEINTCRRFLIATIEAMPKLRAIVLLGRIAHDSTLKA 167 Query: 121 LDVRLAAAPFVHGAVHSAGKFKLYDSYHCSRYNTNTGVLTTDMFRKVFATVRKEL 175 L +R A APF HGAVH AG+ +LYDSYHCSRYNTNTGVLT MFR VFA VR +L Sbjct: 168 LGLRAAQAPFGHGAVHDAGRLRLYDSYHCSRYNTNTGVLTPKMFRDVFARVRTDL 222