BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0184.0081.p         (157 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_577512.1| SsrA-binding protein [Nitrobacter hamburgensis ...   300   4e-80
ref|YP_318539.1| SsrA-binding protein [Nitrobacter winogradskyi ...   295   2e-78
ref|NP_771710.1| SsrA-binding protein [Bradyrhizobium japonicum ...   293   4e-78
ref|ZP_01046050.1| SsrA-binding protein [Nitrobacter sp. Nb-311A...   293   7e-78
ref|YP_569772.1| SsrA-binding protein [Rhodopseudomonas palustri...   292   1e-77

>ref|YP_577512.1| SsrA-binding protein [Nitrobacter hamburgensis X14]
 sp|Q1QL45.1|SSRP_NITHX RecName: Full=SsrA-binding protein
 gb|ABE63052.1| SsrA-binding protein [Nitrobacter hamburgensis X14]
          Length = 157

 Score =  300 bits (768), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 146/157 (92%), Positives = 155/157 (98%)

Query: 1   VAEKNERPIKVVAENRKARFNYAIEDTIEAGISLTGTEVKSIRSGKSTIAESYADSKNGE 60
           +AEKNER IKVVAENRKARFNYAIEDT+EAGI+LTGTEVKS+R+GK+TIAESYADSKNGE
Sbjct: 1   MAEKNERAIKVVAENRKARFNYAIEDTVEAGIALTGTEVKSVRNGKTTIAESYADSKNGE 60

Query: 61  LWLINANIPEYLQANRFNHEPKRPRKLLLHRKQINKLLGAVDREGMTLIPLKLYFNERGR 120
           +WLINANIPEYLQANRFNHEPKRPRKLLLHRKQINKLLGAVDREGMTLIPLKLYFNERGR
Sbjct: 61  IWLINANIPEYLQANRFNHEPKRPRKLLLHRKQINKLLGAVDREGMTLIPLKLYFNERGR 120

Query: 121 AKLLLAVAKGKKLHDKRETVKKRDWGREKGRLMRARG 157
           AKLLLAVAKGKKLHDKRE+ KKRDWGREKGRL+RARG
Sbjct: 121 AKLLLAVAKGKKLHDKRESEKKRDWGREKGRLLRARG 157


>ref|YP_318539.1| SsrA-binding protein [Nitrobacter winogradskyi Nb-255]
 sp|Q3SRA4.1|SSRP_NITWN RecName: Full=SsrA-binding protein
 gb|ABA05187.1| SsrA-binding protein [Nitrobacter winogradskyi Nb-255]
          Length = 157

 Score =  295 bits (754), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 142/157 (90%), Positives = 154/157 (98%)

Query: 1   VAEKNERPIKVVAENRKARFNYAIEDTIEAGISLTGTEVKSIRSGKSTIAESYADSKNGE 60
           +A+K ER IKVVAENRKARFNYAIEDT+EAGI+LTGTEVKSIR+GK+TIAESYADSKNGE
Sbjct: 1   MADKGERAIKVVAENRKARFNYAIEDTVEAGIALTGTEVKSIRNGKTTIAESYADSKNGE 60

Query: 61  LWLINANIPEYLQANRFNHEPKRPRKLLLHRKQINKLLGAVDREGMTLIPLKLYFNERGR 120
           +WLIN+NIPEYLQANRFNHEPKRPRKLLLHRKQINKL+GAVDREGMTLIPLKLYFNERGR
Sbjct: 61  IWLINSNIPEYLQANRFNHEPKRPRKLLLHRKQINKLMGAVDREGMTLIPLKLYFNERGR 120

Query: 121 AKLLLAVAKGKKLHDKRETVKKRDWGREKGRLMRARG 157
           AKLLLA+AKGKKLHDKRE+ KKRDWGREKGRL+RARG
Sbjct: 121 AKLLLAIAKGKKLHDKRESEKKRDWGREKGRLLRARG 157


>ref|NP_771710.1| SsrA-binding protein [Bradyrhizobium japonicum USDA 110]
 sp|Q9RH74.2|SSRP_BRAJA RecName: Full=SsrA-binding protein
 dbj|BAC50335.1| tmRNA-binding protein [Bradyrhizobium japonicum USDA 110]
          Length = 157

 Score =  293 bits (751), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 143/157 (91%), Positives = 152/157 (96%)

Query: 1   VAEKNERPIKVVAENRKARFNYAIEDTIEAGISLTGTEVKSIRSGKSTIAESYADSKNGE 60
           +A+KNERPIKV+AENRKARFNYAIEDTIEAGI+LTGTEVKSIR+GKSTIAESYADSKNGE
Sbjct: 1   MADKNERPIKVMAENRKARFNYAIEDTIEAGIALTGTEVKSIRNGKSTIAESYADSKNGE 60

Query: 61  LWLINANIPEYLQANRFNHEPKRPRKLLLHRKQINKLLGAVDREGMTLIPLKLYFNERGR 120
           +WLINA IPEYLQ NRFNHEPKRPRKLLLHR+QINKL+GAVDREGMTLIPLKLYFNERGR
Sbjct: 61  IWLINATIPEYLQGNRFNHEPKRPRKLLLHRRQINKLIGAVDREGMTLIPLKLYFNERGR 120

Query: 121 AKLLLAVAKGKKLHDKRETVKKRDWGREKGRLMRARG 157
           AKL LAVAKGKKLHDKRET KKRDW REKGRL+RARG
Sbjct: 121 AKLQLAVAKGKKLHDKRETEKKRDWSREKGRLLRARG 157


>ref|ZP_01046050.1| SsrA-binding protein [Nitrobacter sp. Nb-311A]
 gb|EAQ35854.1| SsrA-binding protein [Nitrobacter sp. Nb-311A]
          Length = 157

 Score =  293 bits (749), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 142/157 (90%), Positives = 153/157 (97%)

Query: 1   VAEKNERPIKVVAENRKARFNYAIEDTIEAGISLTGTEVKSIRSGKSTIAESYADSKNGE 60
           +A K ER IKVVAENRKARFNYAIEDT+EAGI+LTGTEVKSIR+GK+TIAESYADSKNGE
Sbjct: 1   MAGKGERAIKVVAENRKARFNYAIEDTVEAGIALTGTEVKSIRNGKTTIAESYADSKNGE 60

Query: 61  LWLINANIPEYLQANRFNHEPKRPRKLLLHRKQINKLLGAVDREGMTLIPLKLYFNERGR 120
           +WLIN+NIPEYLQANRFNHEPKRPRKLLLHRKQINKL+GAVDREGMTLIPLKLYFNERGR
Sbjct: 61  IWLINSNIPEYLQANRFNHEPKRPRKLLLHRKQINKLMGAVDREGMTLIPLKLYFNERGR 120

Query: 121 AKLLLAVAKGKKLHDKRETVKKRDWGREKGRLMRARG 157
           AKLLLA+AKGKKLHDKRE+ KKRDWGREKGRL+RARG
Sbjct: 121 AKLLLAIAKGKKLHDKRESEKKRDWGREKGRLLRARG 157


>ref|YP_569772.1| SsrA-binding protein [Rhodopseudomonas palustris BisB5]
 sp|Q136W8.1|SSRP_RHOPS RecName: Full=SsrA-binding protein
 gb|ABE39871.1| SsrA-binding protein [Rhodopseudomonas palustris BisB5]
          Length = 157

 Score =  292 bits (748), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 141/157 (89%), Positives = 153/157 (97%)

Query: 1   VAEKNERPIKVVAENRKARFNYAIEDTIEAGISLTGTEVKSIRSGKSTIAESYADSKNGE 60
           +A+KNER IKVVAENRKARFNYAIEDTIEAGISLTGTEVKS+RSGKSTIAESYADS+ GE
Sbjct: 1   MADKNERAIKVVAENRKARFNYAIEDTIEAGISLTGTEVKSVRSGKSTIAESYADSRGGE 60

Query: 61  LWLINANIPEYLQANRFNHEPKRPRKLLLHRKQINKLLGAVDREGMTLIPLKLYFNERGR 120
           +WLINANIPEYLQANRFNHEPKRPRKLLLHRKQINKL+GAV+R+GMTLIPLKLYFNE+GR
Sbjct: 61  IWLINANIPEYLQANRFNHEPKRPRKLLLHRKQINKLMGAVERQGMTLIPLKLYFNEKGR 120

Query: 121 AKLLLAVAKGKKLHDKRETVKKRDWGREKGRLMRARG 157
           AKLLLA+AKGK+LHDKRET KKRDW REKGRL+RARG
Sbjct: 121 AKLLLALAKGKQLHDKRETEKKRDWSREKGRLLRARG 157