BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0184.0075.p         (93 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_769215.1| hypothetical protein bsl2575 [Bradyrhizobium ja...    55   4e-06
ref|ZP_01046751.1| hypothetical protein NB311A_13346 [Nitrobacte...    50   1e-04
ref|YP_001923458.1| flagellar export protein FliJ [Methylobacter...    45   0.005
ref|YP_004011301.1| hypothetical protein Rvan_0926 [Rhodomicrobi...    44   0.010
ref|YP_001638298.1| flagellar export protein FliJ [Methylobacter...    43   0.013

>ref|NP_769215.1| hypothetical protein bsl2575 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC47840.1| bsl2575 [Bradyrhizobium japonicum USDA 110]
          Length = 86

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 45/76 (59%)

Query: 9  TARGRGGRESTVSKMLSDLMLACQQIEADIATEEARAGIYDRSDARYPILARSLNDRHAN 68
          T+R      + +  ++SDL    Q ++ADI  EE +AGI D  +  YPILA++L  R  N
Sbjct: 4  TSRFEATIPTQLHALISDLRWRAQLLDADILEEERKAGISDPKNLAYPILAQNLRARRDN 63

Query: 69 LKGTIATLEKRVAESS 84
          L+ +IA LE R+ + S
Sbjct: 64 LQVSIAILESRIEKRS 79


>ref|ZP_01046751.1| hypothetical protein NB311A_13346 [Nitrobacter sp. Nb-311A]
 gb|EAQ35304.1| hypothetical protein NB311A_13346 [Nitrobacter sp. Nb-311A]
          Length = 149

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 39/63 (61%)

Query: 17  ESTVSKMLSDLMLACQQIEADIATEEARAGIYDRSDARYPILARSLNDRHANLKGTIATL 76
           ++ V+ ++SD       ++ +I  EE R  ++D  DA Y +LAR+L  R  NLK TIATL
Sbjct: 77  DAKVASLISDFDRIVGLLDCEILAEEKRTLVFDPQDAAYSMLARALRTRRDNLKATIATL 136

Query: 77  EKR 79
           E++
Sbjct: 137 ERK 139


>ref|YP_001923458.1| flagellar export protein FliJ [Methylobacterium populi BJ001]
 gb|ACB78923.1| flagellar export protein FliJ [Methylobacterium populi BJ001]
          Length = 134

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 40/69 (57%)

Query: 16 RESTVSKMLSDLMLACQQIEADIATEEARAGIYDRSDARYPILARSLNDRHANLKGTIAT 75
          R + +  M++D      +++ ++A EEARAGI D +   YP  AR+   R  N++ + A 
Sbjct: 21 RVAQIEMMMADFNRMAAELDREVAQEEARAGISDPAHFAYPTYARAATGRRDNMRQSAAA 80

Query: 76 LEKRVAESS 84
          LE ++AE+ 
Sbjct: 81 LEGQLAEAK 89


>ref|YP_004011301.1| hypothetical protein Rvan_0926 [Rhodomicrobium vannielii ATCC
          17100]
 gb|ADP70202.1| hypothetical protein Rvan_0926 [Rhodomicrobium vannielii ATCC
          17100]
          Length = 132

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 1/87 (1%)

Query: 2  NMHHRFETARGRGGRESTVSKMLSDLMLACQQIEADIATEEARAGIYDRSDARYPILARS 61
          N   RFE    R  + S +  M++D       +E  I  E+  +GI D +   YP  AR+
Sbjct: 7  NQIQRFEYEEKRQ-QVSDLELMIADFARMANDLEQQIKIEQQTSGISDVNHFAYPTFARA 65

Query: 62 LNDRHANLKGTIATLEKRVAESSQHQL 88
             R  NL+ +IA LEKR+  + Q  L
Sbjct: 66 AMTRRDNLRSSIAELEKRLDRARQEAL 92


>ref|YP_001638298.1| flagellar export protein FliJ [Methylobacterium extorquens PA1]
 ref|YP_002419629.1| flagellar export protein FliJ [Methylobacterium chloromethanicum
          CM4]
 ref|YP_002961795.1| hypothetical protein MexAM1_META1p0588 [methylobacterium
          extorquens AM1]
 ref|YP_003066600.1| hypothetical protein METDI0959 [Methylobacterium extorquens DM4]
 gb|ABY29227.1| flagellar export protein FliJ [Methylobacterium extorquens PA1]
 gb|ACK81701.1| flagellar export protein FliJ [Methylobacterium chloromethanicum
          CM4]
 gb|ACS38518.1| conserved hypothetical protein, putative flagellar fliJ protein
          [Methylobacterium extorquens AM1]
 emb|CAX22582.1| conserved hypothetical protein, putative flagellar fliJ protein
          [Methylobacterium extorquens DM4]
          Length = 134

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 40/69 (57%)

Query: 16 RESTVSKMLSDLMLACQQIEADIATEEARAGIYDRSDARYPILARSLNDRHANLKGTIAT 75
          R + +  M++D      +++ +++ EEARAGI D +   YP  AR+   R  N++ + A 
Sbjct: 21 RVAQIEMMMADFNRMAAELDREVSQEEARAGISDPAHFAYPTYARAATGRRDNMRQSAAA 80

Query: 76 LEKRVAESS 84
          LE ++AE+ 
Sbjct: 81 LEGQLAEAK 89