BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0184.0073.p (262 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001566841.1| AraC family transcriptional regulator [Delft... 335 6e-90 ref|YP_004486165.1| AraC family transcriptional regulator [Delft... 332 5e-89 ref|ZP_07045220.1| AraC family transcriptional regulator [Comamo... 285 6e-75 ref|YP_004381241.1| AraC family transcriptional regulator [Pseud... 284 1e-74 ref|YP_261221.2| AraC family transcriptional regulator [Pseudomo... 275 6e-72 >ref|YP_001566841.1| AraC family transcriptional regulator [Delftia acidovorans SPH-1] gb|ABX38456.1| transcriptional regulator, AraC family [Delftia acidovorans SPH-1] Length = 257 Score = 335 bits (858), Expect = 6e-90, Method: Compositional matrix adjust. Identities = 157/254 (61%), Positives = 198/254 (77%) Query: 9 ELITRHLDYHATARPMAAMEIDYPSGASTGLHAHPRGQLLYAIEGVMVVRCAEGTWVVPP 68 EL R+L YH T RPMAAME ++ G STG H+HPRGQLLYAIEGVM V+ G+W+VPP Sbjct: 4 ELPRRYLKYHQTGRPMAAMEANWAHGTSTGWHSHPRGQLLYAIEGVMSVQLHSGSWLVPP 63 Query: 69 NRAVWLVADLEHEVRMCGAVKIRTVFVDADAAPNLPQASCVFAVSPLLRELFVAAMRVPL 128 NR +W+ AD EH+VRM G VK+RT ++DA A +LP +CV VSPLLREL VAA+ VPL Sbjct: 64 NRGLWIEADAEHDVRMSGDVKMRTAYIDASAFADLPARTCVVNVSPLLRELVVAAVGVPL 123 Query: 129 DYAPATSDERLMRVLLDQLREVDVLPLHLPMPRDERLARVCTALVACPDDGSTAEQWARR 188 DYA + DERLM +L+D+LR +VLPLHLP+ D RL +VC AL+ P D +TAE WA+R Sbjct: 124 DYAEGSRDERLMHLLVDELRAAEVLPLHLPLSTDARLRQVCEALMREPADTATAEHWAQR 183 Query: 189 LKLTSKTIHRLFARETGMTFGEWRQQARLLFALERLARGARVVDVALDSGYASQSAFTAM 248 L +++KT+ RLF +ETGM F +WR+QARL+FAL R+A G R++D+ALD GYASQSAFTAM Sbjct: 184 LGVSAKTLQRLFVKETGMPFAQWREQARLMFALGRIAAGERIIDIALDCGYASQSAFTAM 243 Query: 249 FRKHFGVPPNAFYR 262 F++HFGVPP+ F R Sbjct: 244 FKRHFGVPPSGFQR 257 >ref|YP_004486165.1| AraC family transcriptional regulator [Delftia sp. Cs1-4] gb|AEF87810.1| transcriptional regulator, AraC family [Delftia sp. Cs1-4] Length = 257 Score = 332 bits (850), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 156/254 (61%), Positives = 197/254 (77%) Query: 9 ELITRHLDYHATARPMAAMEIDYPSGASTGLHAHPRGQLLYAIEGVMVVRCAEGTWVVPP 68 EL +L YH T RPMAAME ++ G STG H+HPRGQLLYAIEGVM V+ G+W+VPP Sbjct: 4 ELPRIYLKYHQTGRPMAAMEANWAHGTSTGWHSHPRGQLLYAIEGVMSVQLHSGSWLVPP 63 Query: 69 NRAVWLVADLEHEVRMCGAVKIRTVFVDADAAPNLPQASCVFAVSPLLRELFVAAMRVPL 128 NR +W+ AD EH+VRM G VK+RT ++DA A +LP +CV VSPLLREL VAA+ VPL Sbjct: 64 NRGLWIEADAEHDVRMSGDVKMRTAYIDASAFADLPARTCVVNVSPLLRELVVAAVGVPL 123 Query: 129 DYAPATSDERLMRVLLDQLREVDVLPLHLPMPRDERLARVCTALVACPDDGSTAEQWARR 188 DYA + DERLM +L+D+LR +VLPLHLP+ D RL +VC AL+ P D +TAE WA+R Sbjct: 124 DYAEGSRDERLMHLLVDELRAAEVLPLHLPLSADARLRQVCEALMREPADTATAEHWAQR 183 Query: 189 LKLTSKTIHRLFARETGMTFGEWRQQARLLFALERLARGARVVDVALDSGYASQSAFTAM 248 L +++KT+ RLF +ETGM F +WR+QARL+FAL R+A G R++D+ALD GYASQSAFTAM Sbjct: 184 LGVSAKTLQRLFVKETGMPFAQWREQARLMFALGRIAAGERIIDIALDCGYASQSAFTAM 243 Query: 249 FRKHFGVPPNAFYR 262 F++HFGVPP+ F R Sbjct: 244 FKRHFGVPPSGFQR 257 >ref|ZP_07045220.1| AraC family transcriptional regulator [Comamonas testosteroni S44] gb|EFI61214.1| AraC family transcriptional regulator [Comamonas testosteroni S44] Length = 257 Score = 285 bits (728), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 132/250 (52%), Positives = 170/250 (68%) Query: 13 RHLDYHATARPMAAMEIDYPSGASTGLHAHPRGQLLYAIEGVMVVRCAEGTWVVPPNRAV 72 +H Y + A P+ ME +P G STG H+HP+GQLLYA EGVMVV G+W+VPPNRA+ Sbjct: 8 KHKQYDSLAWPVVVMESRWPVGMSTGWHSHPKGQLLYATEGVMVVHTDAGSWIVPPNRAL 67 Query: 73 WLVADLEHEVRMCGAVKIRTVFVDADAAPNLPQASCVFAVSPLLRELFVAAMRVPLDYAP 132 W+ L H V M G V +RT ++DA LP S V VSPLLREL V A+R+ P Sbjct: 68 WITTGLRHTVTMAGDVLMRTAYIDAAKVTTLPHESSVINVSPLLRELLVEAVRIAFHTEP 127 Query: 133 ATSDERLMRVLLDQLREVDVLPLHLPMPRDERLARVCTALVACPDDGSTAEQWARRLKLT 192 D RL+ +L+D++R LPLHLPMP+D RL +C L A P D S A +WA + + Sbjct: 128 KGRDARLLELLIDEIRVSTTLPLHLPMPKDGRLRSICDQLGATPSDSSNAAEWAASIHVG 187 Query: 193 SKTIHRLFARETGMTFGEWRQQARLLFALERLARGARVVDVALDSGYASQSAFTAMFRKH 252 +T+HRLFA+ETGMTF +WR+QARLL AL +A G +V++VALD GY S SAF AMFR+H Sbjct: 188 ERTLHRLFAKETGMTFAQWREQARLLHALRGIAAGNKVIEVALDCGYGSASAFAAMFRRH 247 Query: 253 FGVPPNAFYR 262 FGV P++FY+ Sbjct: 248 FGVSPSSFYQ 257 >ref|YP_004381241.1| AraC family transcriptional regulator [Pseudomonas mendocina NK-01] gb|AEB59489.1| AraC family transcriptional regulator [Pseudomonas mendocina NK-01] Length = 254 Score = 284 bits (726), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 138/248 (55%), Positives = 169/248 (68%) Query: 15 LDYHATARPMAAMEIDYPSGASTGLHAHPRGQLLYAIEGVMVVRCAEGTWVVPPNRAVWL 74 L Y + + P+ + IDYPSG H+HPR QL+YAIEGV+VV G WV PP R VWL Sbjct: 7 LPYESLSMPVTGVAIDYPSGHQVPSHSHPRAQLIYAIEGVLVVDTPAGRWVTPPTRGVWL 66 Query: 75 VADLEHEVRMCGAVKIRTVFVDADAAPNLPQASCVFAVSPLLRELFVAAMRVPLDYAPAT 134 A EH ++M G ++R++FV+ DAAP LP +CV +SPLLREL AA VP Y + Sbjct: 67 QAGCEHSLQMRGVTRVRSLFVNPDAAPGLPIGNCVIDISPLLRELIQAATLVPAHYPANS 126 Query: 135 SDERLMRVLLDQLREVDVLPLHLPMPRDERLARVCTALVACPDDGSTAEQWARRLKLTSK 194 D RLMR LLD+L + VLPLHLP P D R+ARVC +L P AE WA++L ++SK Sbjct: 127 RDGRLMRFLLDELSSLPVLPLHLPWPDDARIARVCQSLADNPAQAEPAEYWAKQLAMSSK 186 Query: 195 TIHRLFARETGMTFGEWRQQARLLFALERLARGARVVDVALDSGYASQSAFTAMFRKHFG 254 T HR F R TG+TFG WRQQARLL +LE LA+G V+ VAL GY SQSAF A FR+ FG Sbjct: 187 TFHRHFQRSTGITFGRWRQQARLLLSLEALAQGLPVLQVALQHGYDSQSAFAAAFRRQFG 246 Query: 255 VPPNAFYR 262 VPP+AFYR Sbjct: 247 VPPSAFYR 254 >ref|YP_261221.2| AraC family transcriptional regulator [Pseudomonas fluorescens Pf-5] gb|AAY93385.2| transcriptional regulator, AraC family [Pseudomonas fluorescens Pf-5] Length = 276 Score = 275 bits (702), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 134/255 (52%), Positives = 173/255 (67%), Gaps = 2/255 (0%) Query: 8 DELITRHLDYHATARPMAAMEIDYPSGASTGLHAHPRGQLLYAIEGVMVVRCAEGTWVVP 67 D L+ +D + P+ ++ +DYP+G H+HPR QL YAIEGV+V+ G WVVP Sbjct: 24 DLLVVSSID--CLSMPVTSIAVDYPNGHEIPAHSHPRSQLAYAIEGVLVIDTESGRWVVP 81 Query: 68 PNRAVWLVADLEHEVRMCGAVKIRTVFVDADAAPNLPQASCVFAVSPLLRELFVAAMRVP 127 P+R VWL A +EH VRM GAV++R++F++ DA LP+ CV VSPLLREL +AA +V Sbjct: 82 PSRGVWLQAGVEHRVRMRGAVRMRSLFINVDAIAGLPEHDCVIEVSPLLRELILAAAQVG 141 Query: 128 LDYAPATSDERLMRVLLDQLREVDVLPLHLPMPRDERLARVCTALVACPDDGSTAEQWAR 187 Y+P + D RLMR++LD++R + VLP LP P + R+ RVC AL P D TAEQW Sbjct: 142 THYSPDSRDGRLMRLILDEMRSLPVLPFSLPWPHEPRMLRVCQALADDPSDNRTAEQWGD 201 Query: 188 RLKLTSKTIHRLFARETGMTFGEWRQQARLLFALERLARGARVVDVALDSGYASQSAFTA 247 L +++KT HR F R TG+TFG WRQQARLL +LE LA G VV VAL GY SQSAF A Sbjct: 202 CLAMSAKTFHRQFQRHTGITFGRWRQQARLLMSLECLAEGMPVVQVALQHGYDSQSAFAA 261 Query: 248 MFRKHFGVPPNAFYR 262 F++ FG PP+ FYR Sbjct: 262 AFKRQFGTPPSEFYR 276