BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0184.0044.p (375 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08628753.1| hypothetical protein CSIRO_1837 [Bradyrhizobi... 473 e-131 ref|YP_576335.1| hypothetical protein Nham_1027 [Nitrobacter ham... 461 e-127 ref|ZP_01046408.1| hypothetical protein NB311A_12899 [Nitrobacte... 457 e-126 ref|YP_004011326.1| hypothetical protein Rvan_0951 [Rhodomicrobi... 401 e-110 ref|YP_004012807.1| hypothetical protein Rvan_2493 [Rhodomicrobi... 384 e-104 >ref|ZP_08628753.1| hypothetical protein CSIRO_1837 [Bradyrhizobiaceae bacterium SG-6C] gb|EGP08558.1| hypothetical protein CSIRO_1837 [Bradyrhizobiaceae bacterium SG-6C] Length = 391 Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust. Identities = 221/375 (58%), Positives = 279/375 (74%), Gaps = 1/375 (0%) Query: 1 VKIVTRDEIAGCPAWAASFADLRKDHRYYEILEDTLRERVEYRYFAIIDRAGSLHAVQPF 60 V V+R E++ C W FA RKDHRYYEI+EDTLRE +YRYFAI D G + AVQPF Sbjct: 18 VAAVSRAELSSCEVWRTMFASERKDHRYYEIIEDTLREGFDYRYFAIRDANGQIRAVQPF 77 Query: 61 FLLDQDVLEGLGAEWQPLLARIRRFVPGFFRMRTLMVGCFAGEGHLAGSSTVPSGKIAEI 120 FLLDQDVLEG+G+EW+ L+ IRR P F ++RTLMVGC AGEGHLA V +A++ Sbjct: 78 FLLDQDVLEGMGSEWR-LVWLIRRRYPRFLKLRTLMVGCTAGEGHLAVGDGVSVESVADV 136 Query: 121 LCSEIVTLARSCRAQLIVLKEFPARYRPVLDCFVRRGFARAPSMPMTALNIEHDDFDAYM 180 L +I LA+ A LIVLKEFP YR CF++RGF RAPSMPMT LNIE+++FD ++ Sbjct: 137 LSRDIGKLAKQLGAHLIVLKEFPVGYREAFACFLQRGFGRAPSMPMTKLNIEYENFDRFI 196 Query: 181 QNALPRSARWQLRKKFKATDGETIALTVTDDARDAVDEIYPLYLQVFDRSKFRFEKLTAD 240 + AL AR +R+ +A+ GE I +TVTDD + VDEIYPLYLQV++RSKFRFEKLT D Sbjct: 197 EKALSGKARKNVRRNLQASAGEDIRMTVTDDTANLVDEIYPLYLQVYERSKFRFEKLTKD 256 Query: 241 YLRRLGSDMKDKVRFFIWRRGGKVIAFSLCMVEGDSLFWEYVGLDYGVALDLHLYYYTIR 300 Y R +G+ MKDKVR F W RG ++AF++CMV+GD F EYVG DY VAL+LHLY+ +R Sbjct: 257 YFREVGTQMKDKVRVFTWHRGNTLVAFNICMVQGDQFFSEYVGFDYSVALNLHLYFCVVR 316 Query: 301 DMMNWAIANGYRWLRSTGLSYEPKFRMRHDLDPLDLYVRLRSPLPNAIFRLLLPWIVPAR 360 D +NWAIA GY+W RS+GL+Y+PK +RH LDP+DLYVR SP+ N + + +LPW+ P R Sbjct: 317 DTINWAIAGGYKWFRSSGLNYDPKLHLRHQLDPVDLYVRHVSPVANMVLKRVLPWLSPVR 376 Query: 361 YDKTLRKFANYREVW 375 YD+TL+KF NYRE+W Sbjct: 377 YDETLKKFPNYREMW 391 >ref|YP_576335.1| hypothetical protein Nham_1027 [Nitrobacter hamburgensis X14] gb|ABE61875.1| conserved hypothetical protein [Nitrobacter hamburgensis X14] Length = 387 Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust. Identities = 223/375 (59%), Positives = 275/375 (73%) Query: 1 VKIVTRDEIAGCPAWAASFADLRKDHRYYEILEDTLRERVEYRYFAIIDRAGSLHAVQPF 60 V ++RDE+ C AW +FAD RKDHRYYEI+ DT+R+R EY YFAI D +G + AVQP+ Sbjct: 13 VAPISRDELRTCEAWRTAFADRRKDHRYYEIIADTIRDRFEYGYFAIRDASGRVLAVQPY 72 Query: 61 FLLDQDVLEGLGAEWQPLLARIRRFVPGFFRMRTLMVGCFAGEGHLAGSSTVPSGKIAEI 120 FLLDQDVLEG+ + L+A IRR P F ++RTLM+GC AGEGHLA S+ + S IA Sbjct: 73 FLLDQDVLEGVKLDGWSLVASIRRRYPRFLKLRTLMLGCTAGEGHLATSAHLSSTAIAMA 132 Query: 121 LCSEIVTLARSCRAQLIVLKEFPARYRPVLDCFVRRGFARAPSMPMTALNIEHDDFDAYM 180 L IV AR+ AQ+IVLKEFP R L CF R GF RAPSMPMT L+I++D FD YM Sbjct: 133 LAQGIVAQARALGAQMIVLKEFPRGDRRDLACFEREGFGRAPSMPMTILDIDYDSFDDYM 192 Query: 181 QNALPRSARWQLRKKFKATDGETIALTVTDDARDAVDEIYPLYLQVFDRSKFRFEKLTAD 240 Q AL R LRKKF T+ +A+TV D+A +DE+YPLYLQ ++ S F FEKLT D Sbjct: 193 QKALSAKTRRHLRKKFLGTENSGLAMTVADNAASFIDELYPLYLQTYEHSNFHFEKLTRD 252 Query: 241 YLRRLGSDMKDKVRFFIWRRGGKVIAFSLCMVEGDSLFWEYVGLDYGVALDLHLYYYTIR 300 Y RRLG +M DK RFFIW RG ++AF+LCMVEGD +F EY+GLDY A DLHLY+Y R Sbjct: 253 YFRRLGCEMSDKTRFFIWDRGNTLMAFALCMVEGDDIFAEYIGLDYDFAFDLHLYHYITR 312 Query: 301 DMMNWAIANGYRWLRSTGLSYEPKFRMRHDLDPLDLYVRLRSPLPNAIFRLLLPWIVPAR 360 DM++WA+A+GY+ RS+GL+Y+PK +RH LDP+DLYVRL SP N I RL+LPWIVP R Sbjct: 313 DMISWAMAHGYKRFRSSGLNYDPKLHLRHRLDPIDLYVRLVSPFANRILRLVLPWIVPVR 372 Query: 361 YDKTLRKFANYREVW 375 YD TLRKF++Y E+W Sbjct: 373 YDATLRKFSDYHEMW 387 >ref|ZP_01046408.1| hypothetical protein NB311A_12899 [Nitrobacter sp. Nb-311A] gb|EAQ35722.1| hypothetical protein NB311A_12899 [Nitrobacter sp. Nb-311A] Length = 387 Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust. Identities = 219/372 (58%), Positives = 278/372 (74%) Query: 4 VTRDEIAGCPAWAASFADLRKDHRYYEILEDTLRERVEYRYFAIIDRAGSLHAVQPFFLL 63 ++RDE+ C AW +FA RKDHRYYEI+ DT+R+ EY YFAI D +G + AVQP+FLL Sbjct: 16 ISRDELRTCEAWRIAFAGQRKDHRYYEIIADTIRDHFEYGYFAIRDASGRVLAVQPYFLL 75 Query: 64 DQDVLEGLGAEWQPLLARIRRFVPGFFRMRTLMVGCFAGEGHLAGSSTVPSGKIAEILCS 123 DQDVLEG+ + L+ARIRR P F ++RTLM+GC AGEGHLA S+ + S +A+ L Sbjct: 76 DQDVLEGIKLDRLSLVARIRRRYPRFLKLRTLMLGCTAGEGHLAASAYLSSATVAKTLAQ 135 Query: 124 EIVTLARSCRAQLIVLKEFPARYRPVLDCFVRRGFARAPSMPMTALNIEHDDFDAYMQNA 183 IV A + A++IVLKEF R L CF R GFARAPSMPMT L+I++D+FD Y Q A Sbjct: 136 GIVAQANALGARMIVLKEFSRGDRRDLACFEREGFARAPSMPMTTLDIDYDNFDEYTQKA 195 Query: 184 LPRSARWQLRKKFKATDGETIALTVTDDARDAVDEIYPLYLQVFDRSKFRFEKLTADYLR 243 L R LRKKF+AT G + +TVT++A + +DEIYPLYLQ ++RS F FEKLT DY R Sbjct: 196 LSAKTRRDLRKKFRATKGSRLQMTVTENAANFIDEIYPLYLQSYERSNFHFEKLTKDYFR 255 Query: 244 RLGSDMKDKVRFFIWRRGGKVIAFSLCMVEGDSLFWEYVGLDYGVALDLHLYYYTIRDMM 303 RLG +M DK RFFIW RG ++AF+LCMVEGD +F EY+GLDY ALDLHLY+Y RD++ Sbjct: 256 RLGCEMSDKTRFFIWYRGNTLMAFALCMVEGDEIFAEYIGLDYHFALDLHLYHYVSRDVI 315 Query: 304 NWAIANGYRWLRSTGLSYEPKFRMRHDLDPLDLYVRLRSPLPNAIFRLLLPWIVPARYDK 363 +WA+A+GY+ RS+GL+Y+PK + H LDP+DLYVR SP+ N I RL+LPWIVP RYD Sbjct: 316 SWAMAHGYKRFRSSGLNYDPKLHLGHRLDPIDLYVRHVSPVANWIMRLVLPWIVPVRYDA 375 Query: 364 TLRKFANYREVW 375 TLRKFA+YR++W Sbjct: 376 TLRKFASYRQIW 387 >ref|YP_004011326.1| hypothetical protein Rvan_0951 [Rhodomicrobium vannielii ATCC 17100] gb|ADP70227.1| protein of unknown function DUF482 [Rhodomicrobium vannielii ATCC 17100] Length = 409 Score = 401 bits (1031), Expect = e-110, Method: Compositional matrix adjust. Identities = 198/373 (53%), Positives = 256/373 (68%), Gaps = 2/373 (0%) Query: 1 VKIVTRDEIAGCPAWAASFADLRKDHRYYEILEDTLRERVEYRYFAIIDRAGSLHAVQPF 60 V +V R + G PAW+ +FA LRKD RYYEI+EDT+ YRYFA+ DR G AVQPF Sbjct: 29 VSVVERRSLVGMPAWSNAFAHLRKDSRYYEIVEDTVCPEFRYRYFALTDRFGRAMAVQPF 88 Query: 61 FLLDQDVLEGLGAEWQPLLARIRRFVPGFFRMRTLMVGCFAGEGHLAGSSTVPSGKIAEI 120 F+LDQD++ G G + + R+RR P F MRTLM+GC AGEGHLA + AE+ Sbjct: 89 FVLDQDLVAGSGQRLKGFVDRVRRVWPRFLTMRTLMMGCAAGEGHLAAKDQATRAREAEV 148 Query: 121 LCSEIVTLARSCRAQLIVLKEFPARYRPVLDCFVRRGFARAPSMPMTALNIE-HDDFDAY 179 L ++IV LAR+ +A LIVLKEFPA YR L F +GF PSMPMT L+I + FD Y Sbjct: 149 LSADIVRLARAEKASLIVLKEFPAEYREALSAFREKGFTAIPSMPMTRLDISTYKSFDDY 208 Query: 180 MQNALPRSARWQLRKKFKATDGET-IALTVTDDARDAVDEIYPLYLQVFDRSKFRFEKLT 238 + A+ R + RKKFKA + I L V +A DA+D+I+ LY QV+++S +FEKLT Sbjct: 209 LNKAIKSKRRTEFRKKFKAAEQSAPIELEVRHNAGDALDQIFALYEQVYEKSDMKFEKLT 268 Query: 239 ADYLRRLGSDMKDKVRFFIWRRGGKVIAFSLCMVEGDSLFWEYVGLDYGVALDLHLYYYT 298 Y LG M DK RFFIWR+ G+VIAFSLC++EGD L+ EY+GLDY +AL LHLY+Y Sbjct: 269 KAYFAELGRRMPDKARFFIWRQEGRVIAFSLCLIEGDKLYGEYLGLDYTIALQLHLYFYV 328 Query: 299 IRDMMNWAIANGYRWLRSTGLSYEPKFRMRHDLDPLDLYVRLRSPLPNAIFRLLLPWIVP 358 +RD ++WAI NG++ + ST L Y PK +MRH+L PLDLYVR SP+ NAI R +LP++ P Sbjct: 329 MRDTISWAIENGFKEIVSTSLGYGPKLQMRHELRPLDLYVRHTSPIANAILRRVLPYLEP 388 Query: 359 ARYDKTLRKFANY 371 R ++TL+KF NY Sbjct: 389 TRGEETLQKFPNY 401 >ref|YP_004012807.1| hypothetical protein Rvan_2493 [Rhodomicrobium vannielii ATCC 17100] gb|ADP71708.1| hypothetical protein Rvan_2493 [Rhodomicrobium vannielii ATCC 17100] Length = 430 Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust. Identities = 184/374 (49%), Positives = 244/374 (65%) Query: 1 VKIVTRDEIAGCPAWAASFADLRKDHRYYEILEDTLRERVEYRYFAIIDRAGSLHAVQPF 60 V + T EI W +F+ KD RYY I+++TL YRYF + D+AG A+QPF Sbjct: 55 VSVATYAEIEASGGWDTAFSGQYKDGRYYRIVQETLHPEHSYRYFVLRDQAGRQKAIQPF 114 Query: 61 FLLDQDVLEGLGAEWQPLLARIRRFVPGFFRMRTLMVGCFAGEGHLAGSSTVPSGKIAEI 120 F+LDQD+L G + + +R P F +RTLMVGC AGEGHL K + Sbjct: 115 FVLDQDILAGASGTIKAAVDTVRHRFPKFLTLRTLMVGCIAGEGHLDNRDAFADPKTCSL 174 Query: 121 LCSEIVTLARSCRAQLIVLKEFPARYRPVLDCFVRRGFARAPSMPMTALNIEHDDFDAYM 180 L + A+ RA LIV KEFP+ YR VL GF PS+PM +L+ H DFDAYM Sbjct: 175 LAQATLDEAKKERAGLIVFKEFPSAYREVLGHLKDDGFICLPSLPMASLSTAHKDFDAYM 234 Query: 181 QNALPRSARWQLRKKFKATDGETIALTVTDDARDAVDEIYPLYLQVFDRSKFRFEKLTAD 240 +L R+ R LR+KFKA + ++V +D VDEIYPLYL V++RSK FEKLT D Sbjct: 235 AASLSRATRKDLRRKFKAAQSAGLTMSVVEDVTPIVDEIYPLYLNVYNRSKLHFEKLTKD 294 Query: 241 YLRRLGSDMKDKVRFFIWRRGGKVIAFSLCMVEGDSLFWEYVGLDYGVALDLHLYYYTIR 300 YL LG M D+ RFF+WRRG +++AF+LCMV D+++ +Y+GLDY VALDLHLY+YTIR Sbjct: 295 YLCALGQRMPDRTRFFVWRRGDRIVAFNLCMVHNDAIYDQYIGLDYEVALDLHLYHYTIR 354 Query: 301 DMMNWAIANGYRWLRSTGLSYEPKFRMRHDLDPLDLYVRLRSPLPNAIFRLLLPWIVPAR 360 D+M+WA+ANGY+ S GL+Y+PK +R LDPLDLY R RSP+ NA +++LP++ P + Sbjct: 355 DIMSWAMANGYQRYVSNGLNYDPKHHLRMQLDPLDLYARHRSPVINAAMKVVLPYLEPTK 414 Query: 361 YDKTLRKFANYREV 374 YD L+KFANY ++ Sbjct: 415 YDPHLKKFANYSDL 428