BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0184.0043.p (403 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_774263.1| hypothetical protein blr7623 [Bradyrhizobium ja... 536 e-150 ref|ZP_08628359.1| hypothetical protein CSIRO_1433 [Bradyrhizobi... 408 e-112 ref|NP_949062.1| leucine/isoleucine/valine-binding protein [Rhod... 403 e-110 ref|YP_001993217.1| branched-chain amino acid ABC transporter pe... 403 e-110 ref|YP_570683.1| extracellular ligand-binding receptor [Rhodopse... 400 e-109 >ref|NP_774263.1| hypothetical protein blr7623 [Bradyrhizobium japonicum USDA 110] dbj|BAC52888.1| blr7623 [Bradyrhizobium japonicum USDA 110] Length = 423 Score = 536 bits (1382), Expect = e-150, Method: Compositional matrix adjust. Identities = 245/407 (60%), Positives = 323/407 (79%), Gaps = 4/407 (0%) Query: 1 MAILIRAILAGVVALASLGAITQKVRDQGVTDTEIRIGNVMPYSGALEIFGQIGKAEAAY 60 M + R + ++A ASLGA++Q+ +Q +D EIRIGNVMPYSG L FG IG AEAAY Sbjct: 17 MRVTGRLLFIVIIAFASLGAMSQQRSEQPASDNEIRIGNVMPYSGPLSEFGAIGTAEAAY 76 Query: 61 FEMINERGGINGRKIRFMSYDDLSDPSNAMDLTRILVETDNVLLMFGSFGTPGNLAVRKY 120 F+MIN RGGINGRKIRF++ DD SDP+ A++LTR LVE D+V LMFGSFGTPGNLA R Y Sbjct: 77 FDMINARGGINGRKIRFITRDDNSDPAAALELTRNLVEKDDVHLMFGSFGTPGNLATRWY 136 Query: 121 LNERQVPQLFVASGDHDLSEPSLYPWTMGWQPSYREEGRIYANYIQAFYPGKKIVALWEN 180 LNE+++PQLF+A+GD +LS+ +PWTMGWQPS+R EGRIYANYIQA+YP KKIV LW+N Sbjct: 137 LNEKKIPQLFLATGDEELSQAKAFPWTMGWQPSFRSEGRIYANYIQAYYPRKKIVVLWQN 196 Query: 181 DQFGRELFKGLVQGLGDVAHNIRVDIAYDVDDQHLDGHVSILKQSGAEVFVFAGVPENAA 240 DQFGR L+KG+ +GLGD+ ++ VDIA+D++D+HL+GHVSILK++GA++FVF GVP A+ Sbjct: 197 DQFGRMLYKGIQEGLGDLNRHVLVDIAFDINDEHLEGHVSILKRAGADIFVFLGVPSTAS 256 Query: 241 KVIRAAADHGWRPVFVVNQMASSIATVLKPAGTENATGVITAAFLKDASDPAWREEQG-- 298 KVI+ AA WRPVF+VN ++SIA + PAG EN+ GV++AAFLKD SDPAW+ + Sbjct: 257 KVIKLAASLKWRPVFIVNDASASIANAMAPAGLENSAGVVSAAFLKDPSDPAWKNDPAMK 316 Query: 299 GWHSFLDKYAKAGGKDDAAAVYGYAAAETMVEVLRQCGNDLSRENVMKQAAALRDYQASA 358 W +F+DKY + +++AAVYGYAAAE + +VL+QCG+D SREN+M+QAA+L+ YQ S Sbjct: 317 DWFAFMDKYHQVESTNNSAAVYGYAAAEALTKVLKQCGDDFSRENIMRQAASLKSYQPSL 376 Query: 359 LLPGIKINTA--QFRPVEQLRLLQFDGRSWQPIGDVLDTAFVGSSGK 403 LP I++NT+ + P+ Q+RL+QFDGRSWQP GDV++TAF + + Sbjct: 377 ALPNIRMNTSPDSYLPIRQMRLVQFDGRSWQPFGDVIETAFTEGAAR 423 >ref|ZP_08628359.1| hypothetical protein CSIRO_1433 [Bradyrhizobiaceae bacterium SG-6C] gb|EGP08862.1| hypothetical protein CSIRO_1433 [Bradyrhizobiaceae bacterium SG-6C] Length = 409 Score = 408 bits (1049), Expect = e-112, Method: Compositional matrix adjust. Identities = 194/405 (47%), Positives = 277/405 (68%), Gaps = 9/405 (2%) Query: 5 IRAILAGVVALASLG-----AITQKVRDQGVTDTEIRIGNVMPYSGALEIFGQIGKAEAA 59 R + V A+A+L A+ QK D G +DTEI+IGN+MPYSG +G IGK E A Sbjct: 5 FRLNVTAVTAMAALAMTSGHALAQKKYDTGASDTEIKIGNIMPYSGPASAYGVIGKMEEA 64 Query: 60 YFEMINERGGINGRKIRFMSYDDLSDPSNAMDLTRILVETDNVLLMFGSFGTPGNLAVRK 119 YF+MINE+GGINGRKI F++YDD P A++ R LVE+D VLL+FG GTP N A++K Sbjct: 65 YFKMINEQGGINGRKINFITYDDGYSPPKAVEQARKLVESDEVLLVFGPLGTPSNSAIQK 124 Query: 120 YLNERQVPQLFVASGDHDLSEPSLYPWTMGWQPSYREEGRIYANYIQAFYPGKKIVALWE 179 YLN ++VPQLFVA+G EP +PWTMGWQP+Y+ E R+YA Y+ A P KI +++ Sbjct: 125 YLNAKKVPQLFVATGATKFGEPKEFPWTMGWQPAYQSESRVYAKYLLANKPDAKIAVMYQ 184 Query: 180 NDQFGRELFKGLVQGLGDVAHNIRVDIAYDVDDQHLDGHVSILKQSGAEVFVFAGVPENA 239 ND FG+++ KGL GLG A I + +Y+V + +D H+ LK SGA+VFV P+ A Sbjct: 185 NDDFGKDMLKGLKDGLGAKASQIVAEDSYEVSEPTIDSHIIKLKASGADVFVSFTTPKFA 244 Query: 240 AKVIRAAADHGWRPVFVVNQMASSIATVLKPAGTENATGVITAAFLKDASDPAWREEQG- 298 A+ I+ A+ GW+P ++ + + +S+ +VLKPAG ENA G+++AA+ KD +DP W ++G Sbjct: 245 AQAIKKVAELGWKPTYIQSNVGASVGSVLKPAGFENAQGILSAAYAKDGADPQWDNDEGM 304 Query: 299 -GWHSFLDKYAKAGGKDDAAAVYGYAAAETMVEVLRQCGNDLSRENVMKQAAALRDYQAS 357 +++FL KYA K D + VYGY A+TMV+VL+Q G++L+REN+MKQAA+L+D+ Sbjct: 305 KKFYAFLAKYAPDMNKTDGSVVYGYGQAQTMVQVLKQAGDNLTRENIMKQAASLKDFVPD 364 Query: 358 ALLPGIKINTA--QFRPVEQLRLLQFDGRSWQPIGDVLDTAFVGS 400 LLPG+KINT+ F P++QL+++QF G ++ G ++ GS Sbjct: 365 TLLPGVKINTSPTDFYPIDQLQIMQFKGEKYELQGPIITGGMGGS 409 >ref|NP_949062.1| leucine/isoleucine/valine-binding protein [Rhodopseudomonas palustris CGA009] emb|CAE29166.1| possible leucine/isoleucine/valine-binding protein precursor [Rhodopseudomonas palustris CGA009] Length = 409 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 193/383 (50%), Positives = 266/383 (69%), Gaps = 5/383 (1%) Query: 16 ASLGAITQKVRDQGVTDTEIRIGNVMPYSGALEIFGQIGKAEAAYFEMINERGGINGRKI 75 AS GA+ QK D G +DTEIRIGN+MPYSG +G IG+ EAAYF+MIN++GGINGRKI Sbjct: 21 ASNGALAQKKYDPGASDTEIRIGNIMPYSGPASAYGVIGRTEAAYFKMINDKGGINGRKI 80 Query: 76 RFMSYDDLSDPSNAMDLTRILVETDNVLLMFGSFGTPGNLAVRKYLNERQVPQLFVASGD 135 F+SYDD P ++ R LVE+D VLL+F S GTP N A+ KY+N ++VPQLFVA+G Sbjct: 81 NFISYDDAYSPPKTVEQARKLVESDEVLLIFNSLGTPPNSAIHKYMNSKKVPQLFVATGA 140 Query: 136 HDLSEPSLYPWTMGWQPSYREEGRIYANYIQAFYPGKKIVALWENDQFGRELFKGLVQGL 195 ++P YPWTMGWQP+Y+ E +IYA YI P KI L++ND +G++ KG GL Sbjct: 141 SKWNDPKNYPWTMGWQPNYQSETQIYAKYILKEMPNAKIAVLYQNDDYGKDYLKGFEDGL 200 Query: 196 GDVAHN-IRVDIAYDVDDQHLDGHVSILKQSGAEVFVFAGVPENAAKVIRAAADHGWRPV 254 G + I + +Y+V + +D H+ LK +GA+VF+ P+ AA+ I+ A+ GW+P Sbjct: 201 GAKGQSMIVMKESYEVSEPTIDNHIVKLKSTGADVFINITTPKFAAQAIKKLAEVGWKPT 260 Query: 255 FVVNQMASSIATVLKPAGTENATGVITAAFLKDASDPAWREEQG--GWHSFLDKYAKAGG 312 +N +++S+ +V+KPAG ENA GVI+AA+LKD SD W+++ G + +F+DK G Sbjct: 261 HFLNNVSASVGSVIKPAGYENAQGVISAAYLKDVSDDQWKDDAGMKQFLAFMDKEFPEGN 320 Query: 313 KDDAAAVYGYAAAETMVEVLRQCGNDLSRENVMKQAAALRDYQASALLPGIKINTA--QF 370 K D V GY A+T+VEVL+ CG++L+RENVMKQAA+L+DY+ LLPGIKINT+ F Sbjct: 321 KLDGGTVVGYGVAQTLVEVLKACGDNLTRENVMKQAASLKDYRTEVLLPGIKINTSATDF 380 Query: 371 RPVEQLRLLQFDGRSWQPIGDVL 393 PV QL+L++F G W+ GDV+ Sbjct: 381 APVSQLQLMRFKGEKWELFGDVI 403 >ref|YP_001993217.1| branched-chain amino acid ABC transporter periplasmic protein [Rhodopseudomonas palustris TIE-1] gb|ACF02742.1| Extracellular ligand-binding receptor [Rhodopseudomonas palustris TIE-1] Length = 409 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 192/383 (50%), Positives = 266/383 (69%), Gaps = 5/383 (1%) Query: 16 ASLGAITQKVRDQGVTDTEIRIGNVMPYSGALEIFGQIGKAEAAYFEMINERGGINGRKI 75 AS GA+ QK D G +DTEIRIGN+MPYSG +G IG+ EAAYF+MIN++GGINGRKI Sbjct: 21 ASNGALAQKKYDPGASDTEIRIGNIMPYSGPASAYGVIGRTEAAYFKMINDKGGINGRKI 80 Query: 76 RFMSYDDLSDPSNAMDLTRILVETDNVLLMFGSFGTPGNLAVRKYLNERQVPQLFVASGD 135 F+SYDD P ++ R LVE+D VLL+F S GTP N A+ KY+N ++VPQLFVA+G Sbjct: 81 NFISYDDAYSPPKTVEQARKLVESDEVLLIFNSLGTPPNSAIHKYMNSKKVPQLFVATGA 140 Query: 136 HDLSEPSLYPWTMGWQPSYREEGRIYANYIQAFYPGKKIVALWENDQFGRELFKGLVQGL 195 ++P YPWTMGWQP+Y+ E +IYA YI P KI L++ND +G++ KG GL Sbjct: 141 SKWNDPKNYPWTMGWQPNYQSETQIYAKYILKEMPNAKIAVLYQNDDYGKDYLKGFEDGL 200 Query: 196 GDVAHN-IRVDIAYDVDDQHLDGHVSILKQSGAEVFVFAGVPENAAKVIRAAADHGWRPV 254 G + I + +Y+V + +D H+ LK +GA+VF+ P+ AA+ I+ A+ GW+P Sbjct: 201 GAKGQSMIVMKESYEVSEPTIDNHIVKLKSTGADVFINITTPKFAAQAIKKLAEVGWKPT 260 Query: 255 FVVNQMASSIATVLKPAGTENATGVITAAFLKDASDPAWREEQG--GWHSFLDKYAKAGG 312 +N +++S+ +V+KPAG ENA GVI+AA+LKD SD W+++ G + +F+DK G Sbjct: 261 HFLNNVSASVGSVIKPAGYENAQGVISAAYLKDVSDDQWKDDAGMKQFLAFMDKEFPEGN 320 Query: 313 KDDAAAVYGYAAAETMVEVLRQCGNDLSRENVMKQAAALRDYQASALLPGIKINTA--QF 370 K D + GY A+T+VEVL+ CG++L+RENVMKQAA+L+DY+ LLPGIKINT+ F Sbjct: 321 KLDGGTIVGYGVAQTLVEVLKACGDNLTRENVMKQAASLKDYRTEVLLPGIKINTSATDF 380 Query: 371 RPVEQLRLLQFDGRSWQPIGDVL 393 PV QL+L++F G W+ GDV+ Sbjct: 381 APVSQLQLMRFKGEKWELFGDVI 403 >ref|YP_570683.1| extracellular ligand-binding receptor [Rhodopseudomonas palustris BisB5] gb|ABE40782.1| Extracellular ligand-binding receptor [Rhodopseudomonas palustris BisB5] Length = 418 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 198/399 (49%), Positives = 270/399 (67%), Gaps = 8/399 (2%) Query: 4 LIRAILAGVVALASLG----AITQKVRDQGVTDTEIRIGNVMPYSGALEIFGQIGKAEAA 59 L+ A LA + A+A + A+ QK D G +D+ IRIGN+MPYSG + +G+ E A Sbjct: 15 LLFATLATLSAVAPIAVAPPALAQKTYDPGASDSAIRIGNLMPYSGPASAYAIVGRIEQA 74 Query: 60 YFEMINERGGINGRKIRFMSYDDLSDPSNAMDLTRILVETDNVLLMFGSFGTPGNLAVRK 119 YF MIN++GGINGRKI F+SYDD P+ A++ TR LVE+D VLL+F + GTP N A++K Sbjct: 75 YFRMINDQGGINGRKIEFISYDDAYSPAKAVEQTRKLVESDEVLLVFSAMGTPSNAAIQK 134 Query: 120 YLNERQVPQLFVASGDHDLSEPSLYPWTMGWQPSYREEGRIYANYIQAFYPGKKIVALWE 179 YLN +QVPQLF ASG EP +PWTMGWQP Y+ EGR+YA +I A P +I L++ Sbjct: 135 YLNAKQVPQLFAASGATRFGEPKAFPWTMGWQPPYQVEGRVYAKHILATKPEARIAVLYQ 194 Query: 180 NDQFGRELFKGLVQGLGDVAHNIRVDIAYDVDDQHLDGHVSILKQSGAEVFVFAGVPENA 239 ND GR+L KGL GLG+ A I + +Y+V + D H++ LK SGA+VFV P A Sbjct: 195 NDDLGRDLLKGLKDGLGEQASRIIAEESYEVTEPSADNHIARLKASGADVFVSITTPRFA 254 Query: 240 AKVIRAAADHGWRPVFVVNQMASSIATVLKPAGTENATGVITAAFLKDASDPAWREEQG- 298 A+ IR AA+ WRP++V +++SI V++PAG ENA G+++AA+ KDA+DP W + G Sbjct: 255 AQSIRKAAEMAWRPLYVQALVSASIGAVIRPAGIENAQGLVSAAYNKDAADPQWIGDPGI 314 Query: 299 -GWHSFLDKYAKAGGKDDAAAVYGYAAAETMVEVLRQCGNDLSRENVMKQAAALRDYQAS 357 +H+FLD YA + D + VYGY AA+ +VEVLR+ G+ L+R NVM++AA L+ Y Sbjct: 315 KRFHAFLDAYAPDVNRGDNSVVYGYGAAQCLVEVLRRAGDTLTRANVMREAANLKGYAPD 374 Query: 358 ALLPGIKINTA--QFRPVEQLRLLQFDGRSWQPIGDVLD 394 LLPGI I TA F P+EQLR+++F+G WQ G V+D Sbjct: 375 TLLPGIAITTAPDDFHPIEQLRMMRFEGDHWQLFGPVID 413