BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0184.0035.p (252 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_771738.1| dipeptidase [Bradyrhizobium japonicum USDA 110]... 380 e-104 ref|YP_570153.1| peptidase M15D, vanX D-ala-D-ala dipeptidase [R... 349 2e-94 ref|YP_782284.1| peptidase M15D, vanX D-ala-D-ala dipeptidase [R... 338 4e-91 ref|YP_486042.1| peptidase M15D, vanX D-ala-D-ala dipeptidase [R... 337 1e-90 ref|YP_532121.1| peptidase M15D, vanX D-ala-D-ala dipeptidase [R... 325 4e-87 >ref|NP_771738.1| dipeptidase [Bradyrhizobium japonicum USDA 110] dbj|BAC50363.1| bll5098 [Bradyrhizobium japonicum USDA 110] Length = 312 Score = 380 bits (977), Expect = e-104, Method: Compositional matrix adjust. Identities = 181/247 (73%), Positives = 207/247 (83%), Gaps = 4/247 (1%) Query: 2 KIVVIAWMAIVLIPGAIAPAFAQNLPGDFAFLRDIDPTIIQDIRYASANNFMGRPIAGYG 61 K ++IA +AI +I+ A AQ+LPG F +LRDIDP IIQDIRYA++NNF+GRP+AGYG Sbjct: 65 KSILIALLAIA----SISSAHAQSLPGGFVYLRDIDPGIIQDIRYATSNNFVGRPLAGYG 120 Query: 62 AAECVVKREVGLRLKAVQQELARQRLSLKMFDCYRPARAVADMVAWSKNGTETAAERRYN 121 A ECVVKREVGLRLKAVQQ+LA Q LSLKMFDCYRPARA DMVAWS+NG ETAAERRYN Sbjct: 121 AGECVVKREVGLRLKAVQQDLAAQNLSLKMFDCYRPARASLDMVAWSQNGRETAAERRYN 180 Query: 122 PAFSKADLFRLGYIATHSGHSTGSAVDLTLVDLGADNARKFDPARDYADCTAPAVARAPE 181 P +K +LFRLGYIA+ S HSTG+A+DLTLVDL ADN+ K+DP++ YADCTA AR PE Sbjct: 181 PRIAKTELFRLGYIASRSQHSTGAALDLTLVDLKADNSGKYDPSKTYADCTASVEARPPE 240 Query: 182 GSVDMGTGYDCSDVKAHTATGSITPAQRRWRAMLVAAMARQGFANYAKEWWHFSLPGAGG 241 GSVDMGTGYDC+D K HTA SITP QR WR L+AAMA+QGF NY+KEWWHFSLPGAGG Sbjct: 241 GSVDMGTGYDCTDTKGHTAAPSITPDQRAWRKRLMAAMAKQGFVNYSKEWWHFSLPGAGG 300 Query: 242 PAYDFPI 248 AYDFPI Sbjct: 301 AAYDFPI 307 >ref|YP_570153.1| peptidase M15D, vanX D-ala-D-ala dipeptidase [Rhodopseudomonas palustris BisB5] gb|ABE40252.1| vanX D-Ala-D-Ala dipeptidase. Metallo peptidase. MEROPS family M15D [Rhodopseudomonas palustris BisB5] Length = 238 Score = 349 bits (896), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 168/231 (72%), Positives = 185/231 (80%) Query: 20 PAFAQNLPGDFAFLRDIDPTIIQDIRYASANNFMGRPIAGYGAAECVVKREVGLRLKAVQ 79 PA AQ LP DF +LRD+DP I QDIRYA NNF+GRP+AGY A EC+VKR VGL L+ VQ Sbjct: 5 PACAQPLPDDFVYLRDLDPGIRQDIRYAGVNNFVGRPLAGYDANECIVKRSVGLALQNVQ 64 Query: 80 QELARQRLSLKMFDCYRPARAVADMVAWSKNGTETAAERRYNPAFSKADLFRLGYIATHS 139 +ELA+QRLSLKM DCYRPARA DMVAW+++G ET A+RRYNP FSK DLFRLGYIA S Sbjct: 65 RELAQQRLSLKMLDCYRPARASRDMVAWAQDGRETEAQRRYNPGFSKRDLFRLGYIAEVS 124 Query: 140 GHSTGSAVDLTLVDLGADNARKFDPARDYADCTAPAVARAPEGSVDMGTGYDCSDVKAHT 199 GHSTG+AVDLT+VDL A FDP R YADCTAP RAPE SVDMG GYDCSD KAHT Sbjct: 125 GHSTGAAVDLTIVDLRAPKGPAFDPNRVYADCTAPESRRAPEDSVDMGAGYDCSDAKAHT 184 Query: 200 ATGSITPAQRRWRAMLVAAMARQGFANYAKEWWHFSLPGAGGPAYDFPIVR 250 A SIT QRRWR +LVAAMARQGF N++KEWWHFSLPG G AYDFPI R Sbjct: 185 AAKSITADQRRWRKLLVAAMARQGFVNFSKEWWHFSLPGVGKQAYDFPIAR 235 >ref|YP_782284.1| peptidase M15D, vanX D-ala-D-ala dipeptidase [Rhodopseudomonas palustris BisA53] gb|ABJ07304.1| vanX D-Ala-D-Ala dipeptidase. Metallo peptidase. MEROPS family M15D [Rhodopseudomonas palustris BisA53] Length = 256 Score = 338 bits (868), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 167/245 (68%), Positives = 187/245 (76%), Gaps = 3/245 (1%) Query: 9 MAIVLIPGAI---APAFAQNLPGDFAFLRDIDPTIIQDIRYASANNFMGRPIAGYGAAEC 65 +++ LI A+ APA AQ+LPGDF L +IDPTI QD+RYA +NFMGR IAGY EC Sbjct: 8 LSVALIVAAVLGQAPARAQSLPGDFVRLSEIDPTIRQDLRYAGVHNFMGRRIAGYDGGEC 67 Query: 66 VVKREVGLRLKAVQQELARQRLSLKMFDCYRPARAVADMVAWSKNGTETAAERRYNPAFS 125 VVKR VGL L+ VQ+ELA + LSLKM DCYRPARA DMVAW+++G E AAERRYNP+ Sbjct: 68 VVKRAVGLALREVQRELAPRGLSLKMLDCYRPARASRDMVAWAQDGREVAAERRYNPSIG 127 Query: 126 KADLFRLGYIATHSGHSTGSAVDLTLVDLGADNARKFDPARDYADCTAPAVARAPEGSVD 185 K DLFRLGYIA HSGHSTG+AVDLTLVDL A FDP +DYADCTAPA RAPEGSVD Sbjct: 128 KRDLFRLGYIAEHSGHSTGAAVDLTLVDLRAPPGPAFDPEKDYADCTAPADRRAPEGSVD 187 Query: 186 MGTGYDCSDVKAHTATGSITPAQRRWRAMLVAAMARQGFANYAKEWWHFSLPGAGGPAYD 245 MGTGYDCSD KAHTA SITP QR WR LV AM R GF N+A+EWWHFS PG G YD Sbjct: 188 MGTGYDCSDSKAHTAARSITPKQRSWRNTLVGAMTRHGFVNFAQEWWHFSRPGVGAEPYD 247 Query: 246 FPIVR 250 F + R Sbjct: 248 FTVPR 252 >ref|YP_486042.1| peptidase M15D, vanX D-ala-D-ala dipeptidase [Rhodopseudomonas palustris HaA2] gb|ABD07131.1| Peptidase M15D, vanX D-ala-D-ala dipeptidase [Rhodopseudomonas palustris HaA2] Length = 250 Score = 337 bits (864), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 158/228 (69%), Positives = 182/228 (79%) Query: 21 AFAQNLPGDFAFLRDIDPTIIQDIRYASANNFMGRPIAGYGAAECVVKREVGLRLKAVQQ 80 A AQ LP DF +LRD+DP+I QDIRYA NNF+GR +AGY A EC+VKR VGL L+ VQ+ Sbjct: 18 ARAQPLPDDFVYLRDLDPSIRQDIRYAGVNNFVGRKLAGYDANECIVKRSVGLALQKVQR 77 Query: 81 ELARQRLSLKMFDCYRPARAVADMVAWSKNGTETAAERRYNPAFSKADLFRLGYIATHSG 140 ELA Q +SLKM DCYRPARA +MVAW+++G ETAA++RYNP FSK++LFRLGYIA +SG Sbjct: 78 ELAPQNVSLKMLDCYRPARASREMVAWAQDGHETAAQKRYNPGFSKSELFRLGYIAEYSG 137 Query: 141 HSTGSAVDLTLVDLGADNARKFDPARDYADCTAPAVARAPEGSVDMGTGYDCSDVKAHTA 200 HSTG+AVD+TLVDL A FDP R YADCTAP RAPE SVDMGTGYDCSD KAHT+ Sbjct: 138 HSTGAAVDVTLVDLHAPTGPSFDPNRAYADCTAPEALRAPENSVDMGTGYDCSDAKAHTS 197 Query: 201 TGSITPAQRRWRAMLVAAMARQGFANYAKEWWHFSLPGAGGPAYDFPI 248 SIT QRRWR +L AM RQGF N++KEWWHFSLPG G AYDFPI Sbjct: 198 AKSITAGQRRWRKLLAGAMVRQGFVNFSKEWWHFSLPGGGRQAYDFPI 245 >ref|YP_532121.1| peptidase M15D, vanX D-ala-D-ala dipeptidase [Rhodopseudomonas palustris BisB18] gb|ABD87802.1| vanX D-Ala-D-Ala dipeptidase. Metallo peptidase. MEROPS family M15D [Rhodopseudomonas palustris BisB18] Length = 259 Score = 325 bits (833), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 160/234 (68%), Positives = 178/234 (76%), Gaps = 1/234 (0%) Query: 20 PAFAQNLPGDFAFLRDIDPTIIQDIRYASANNFMGRPIAGYGAAECVVKREVGLRLKAVQ 79 PA AQ LP D FL D+DP+I QDIRYA ANNF+GR + GY AEC+V+R VGL L+AVQ Sbjct: 24 PAAAQPLPDDLVFLHDVDPSIQQDIRYAGANNFIGRRLDGYDGAECIVRRPVGLALRAVQ 83 Query: 80 QELARQRLSLKMFDCYRPARAVADMVAWSKNGTETAAERRYNPAFSKADLFRLGYIATHS 139 + L Q LSLKM DC+RP RA DMVAW+++G ETAAERRYNP FSK +LFRLGYIA S Sbjct: 84 RGLRGQNLSLKMLDCFRPGRASRDMVAWAQDGRETAAERRYNPGFSKRELFRLGYIAERS 143 Query: 140 GHSTGSAVDLTLVDLGADNARKFDPARDYADCTAPAVARAPEGSVDMGTGYDCSDVKAHT 199 GHSTG+AVDLTLVDL A FDP + YADCTAP RAPE SVDMGTGYDCSD KAHT Sbjct: 144 GHSTGAAVDLTLVDLRAPRGPAFDPGKAYADCTAPEALRAPEASVDMGTGYDCSDAKAHT 203 Query: 200 ATGSITPAQRRWRAMLVAAMARQGFANYAKEWWHFSLPGAGG-PAYDFPIVRAR 252 A SITPAQR+WR L AAM R GF NYAKEWWHFS G G AYDFP+ + R Sbjct: 204 AARSITPAQRKWRETLNAAMRRHGFVNYAKEWWHFSQAGMSGLQAYDFPVPQYR 257