BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0184.0028.p (371 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_771744.1| DNA processing protein [Bradyrhizobium japonicu... 537 e-150 ref|YP_532117.1| DNA processing protein DprA [Rhodopseudomonas p... 521 e-145 ref|ZP_01047375.1| SMF protein [Nitrobacter sp. Nb-311A] >gi|856... 520 e-145 ref|YP_001206464.1| DNA processing chain A (DprA/Smf) [Bradyrhiz... 520 e-145 ref|YP_318621.1| SMF protein [Nitrobacter winogradskyi Nb-255] >... 516 e-144 >ref|NP_771744.1| DNA processing protein [Bradyrhizobium japonicum USDA 110] dbj|BAC50369.1| DNA processing protein [Bradyrhizobium japonicum USDA 110] Length = 380 Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust. Identities = 278/364 (76%), Positives = 317/364 (87%), Gaps = 2/364 (0%) Query: 10 KLTDTERLNRLRLIRSDNVGPRTFASLLRHFGDAAHALERLPDLARRGGASGPGRICSEA 69 +LT+TER++RLRLIRSDNVGPRTF SL+ HFG A ALERLPDLARRGGA+ GRICS Sbjct: 17 ELTETERIDRLRLIRSDNVGPRTFRSLVDHFGSARAALERLPDLARRGGAARSGRICSAD 76 Query: 70 DAAAELAACRRFGIDLVAPEEAHYPARLATIDDAPPLLAVRGAREVLMRPMIAIVGSRNA 129 +A AELAA R+FGI +AP E YPARL+T+DDAPPLLAVRG LMRPMIAIVGSRNA Sbjct: 77 EAKAELAASRKFGIAWLAPGEDGYPARLSTLDDAPPLLAVRGDTTTLMRPMIAIVGSRNA 136 Query: 130 SGAGLKFAGTLARDLGDAGFVVISGLARGIDQAAHRATVASGTVAVLAGGHDRIYPPEHE 189 SGAGLKFAG LAR+LG+AGF++ISGLARG+DQAAHR +V SGT+AVLAGGHD IYPPEH Sbjct: 137 SGAGLKFAGQLARELGEAGFIIISGLARGVDQAAHRTSVESGTIAVLAGGHDCIYPPEHG 196 Query: 190 DLLAALLEH-GAAISEMPLGHVPRARDFPRRNRLISGASLGVVIVEAAHRSGSLITARMA 248 DLL ++L+H GAAISEMPLGH PRARDFPRRNRLISGASLGVV+VEAAHRSGSLITARMA Sbjct: 197 DLLTSILDHAGAAISEMPLGHEPRARDFPRRNRLISGASLGVVVVEAAHRSGSLITARMA 256 Query: 249 AEQGREVFAVPGSPIDPRAAGANDLIKQGATLVTEAADVVSAVTPIMERPVMLGAREDDE 308 AEQGREVFAVPGSP+DPRAAG NDLIKQGATLVTEAADV++AV PIMERP+++ ARE D Sbjct: 257 AEQGREVFAVPGSPLDPRAAGTNDLIKQGATLVTEAADVINAVAPIMERPLVIPAREPDS 316 Query: 309 -PLDFATDSGNRERIIDLLGPSPISIDDLIRMADVSPAVVRAVLLELELAGRLERHGGGL 367 P + + +R++I LLGP PI +DDL+RM+ SPA+VR VLLELELAGRLERHGGGL Sbjct: 317 GPFESDPQTHDRDQITGLLGPVPIGLDDLVRMSGASPAIVRTVLLELELAGRLERHGGGL 376 Query: 368 VSMI 371 VS++ Sbjct: 377 VSLL 380 >ref|YP_532117.1| DNA processing protein DprA [Rhodopseudomonas palustris BisB18] gb|ABD87798.1| DNA processing protein DprA, putative [Rhodopseudomonas palustris BisB18] Length = 372 Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust. Identities = 273/372 (73%), Positives = 314/372 (84%), Gaps = 4/372 (1%) Query: 3 DRSPSPAKLTDTERLNRLRLIRSDNVGPRTFASLLRHFGDAAHALERLPDLARRGGASGP 62 D + L+D +RL+ LRLIRSDNVGPRTF SL+ HFG A ALERLPDLARRGGA+ P Sbjct: 2 DNEQRTSHLSDAQRLDWLRLIRSDNVGPRTFRSLVNHFGSARAALERLPDLARRGGAARP 61 Query: 63 GRICSEADAAAELAACRRFGIDLVAPEEAHYPARLATIDDAPPLLAVRGAREVLMRPMIA 122 GRI SE +A EL A +R G+ L+AP E YP RLA I+DAPPLL +RGA + LMRPMIA Sbjct: 62 GRIVSEHEAHLELTASKRLGVSLIAPGELGYPPRLALIEDAPPLLGIRGAPDALMRPMIA 121 Query: 123 IVGSRNASGAGLKFAGTLARDLGDAGFVVISGLARGIDQAAHRATVASGTVAVLAGGHDR 182 IVGSRNASG GLKFAG LARDLG AGFV+ SGLARGIDQAAHRA++ SGTVAVLAGGHD+ Sbjct: 122 IVGSRNASGVGLKFAGALARDLGVAGFVIASGLARGIDQAAHRASLGSGTVAVLAGGHDK 181 Query: 183 IYPPEHEDLLAALL-EHGAAISEMPLGHVPRARDFPRRNRLISGASLGVVIVEAAHRSGS 241 IYPPEH++LLAA+L E GAAISEMPLGHVPRARDFPRRNRLISG +LGV ++EAA+RSGS Sbjct: 182 IYPPEHDELLAAILGEGGAAISEMPLGHVPRARDFPRRNRLISGVALGVAVIEAAYRSGS 241 Query: 242 LITARMAAEQGREVFAVPGSPIDPRAAGANDLIKQGATLVTEAADVVSAVTPIMERPVML 301 LITAR+AAEQGR+VFAVPGSP+DPRAAG NDLIKQGA L+TEAAD+V+AV PI+ERP+ L Sbjct: 242 LITARIAAEQGRDVFAVPGSPLDPRAAGTNDLIKQGAQLITEAADIVTAVAPILERPIEL 301 Query: 302 GAREDDE--PLDFATDSGNRERIIDLLGPSPISIDDLIRMADVSPAVVRAVLLELELAGR 359 +RE DE P+D SG+R R+ LLGPSPI +DDL+R+A VSPAV R VLLELELAGR Sbjct: 302 PSREPDEAAPID-EPGSGDRARVTSLLGPSPIGLDDLVRLAGVSPAVARTVLLELELAGR 360 Query: 360 LERHGGGLVSMI 371 LERHGGGLVS++ Sbjct: 361 LERHGGGLVSLL 372 >ref|ZP_01047375.1| SMF protein [Nitrobacter sp. Nb-311A] gb|EAQ34646.1| SMF protein [Nitrobacter sp. Nb-311A] Length = 372 Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust. Identities = 275/372 (73%), Positives = 313/372 (84%), Gaps = 3/372 (0%) Query: 1 MHDRSPSPAKLTDTERLNRLRLIRSDNVGPRTFASLLRHFGDAAHALERLPDLARRGGAS 60 M R+P +L + +R++ LRLIRS+NVGPRTF SL+ HFG A+ AL RLPDLARRGGAS Sbjct: 1 MDIRNPD-RRLNEAQRIDWLRLIRSENVGPRTFRSLVNHFGSASEALIRLPDLARRGGAS 59 Query: 61 GPGRICSEADAAAELAACRRFGIDLVAPEEAHYPARLATIDDAPPLLAVRGAREVLMRPM 120 PGR+C+EA+A ELAA RR G+ L+AP E YP LATIDDAPPLL VRG +V+ RPM Sbjct: 60 RPGRLCAEAEARNELAAARRIGVSLLAPGETGYPPYLATIDDAPPLLGVRGNLDVMERPM 119 Query: 121 IAIVGSRNASGAGLKFAGTLARDLGDAGFVVISGLARGIDQAAHRATVASGTVAVLAGGH 180 IAIVGSRNASGAG KFA LA +LGDAGFV++SGLARGIDQAAHRA+VA GT+AVLAGGH Sbjct: 120 IAIVGSRNASGAGHKFAQMLAHNLGDAGFVIVSGLARGIDQAAHRASVARGTIAVLAGGH 179 Query: 181 DRIYPPEHEDLLAALLEHGAAISEMPLGHVPRARDFPRRNRLISGASLGVVIVEAAHRSG 240 DRIYP EHEDLLAA+LE G AISEMP+GHVPRARDFPRRNRLISGA++GVV+VEAAHRSG Sbjct: 180 DRIYPLEHEDLLAAVLEDGGAISEMPMGHVPRARDFPRRNRLISGAAIGVVVVEAAHRSG 239 Query: 241 SLITARMAAEQGREVFAVPGSPIDPRAAGANDLIKQGATLVTEAADVVSAVTPIMERPVM 300 SLITAR+AAEQGREVFAVPGSP+DPRAAG NDLIKQGATL+T+AADV++AV PIM RPV Sbjct: 240 SLITARIAAEQGREVFAVPGSPLDPRAAGTNDLIKQGATLITQAADVINAVRPIMRRPVD 299 Query: 301 LGAREDDEPLDFATD--SGNRERIIDLLGPSPISIDDLIRMADVSPAVVRAVLLELELAG 358 L A E + + + + R RI+ LLGP+PI DDLIRMADV PAVVR VLLELELAG Sbjct: 300 LPAEEPERGGTWTDEPAASARARIVALLGPAPIGPDDLIRMADVPPAVVRTVLLELELAG 359 Query: 359 RLERHGGGLVSM 370 RLERHGGGLVSM Sbjct: 360 RLERHGGGLVSM 371 >ref|YP_001206464.1| DNA processing chain A (DprA/Smf) [Bradyrhizobium sp. ORS 278] emb|CAL78244.1| DNA processing chain A (DprA/Smf) [Bradyrhizobium sp. ORS 278] Length = 371 Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust. Identities = 278/365 (76%), Positives = 313/365 (85%), Gaps = 5/365 (1%) Query: 10 KLTDTERLNRLRLIRSDNVGPRTFASLLRHFGDAAHALERLPDLARRGGASGPGRICSEA 69 +L+ TER +RLRLIRSD+VGPRTF +LL FG A AL+RLP+LARRGGAS GRICS Sbjct: 9 ELSATERRDRLRLIRSDHVGPRTFRALLDQFGTARRALDRLPELARRGGASA-GRICSID 67 Query: 70 DAAAELAACRRFGIDLVAPEEAHYPARLATIDDAPPLLAVRGAREVLMRPMIAIVGSRNA 129 +A AEL ACRR G+ L APEE YP RLAT +DAPPLL +RG R+ L RPMIAIVGSRNA Sbjct: 68 EAEAELEACRRQGLKLRAPEEDGYPPRLATCEDAPPLLVIRGDRDTLTRPMIAIVGSRNA 127 Query: 130 SGAGLKFAGTLARDLGDAGFVVISGLARGIDQAAHRATVASGTVAVLAGGHDRIYPPEHE 189 S AGLKFAG LA +LG AGF++ISGLARGIDQAAHRA+VASGTVAVLAGGHDRIYPPEH Sbjct: 128 SAAGLKFAGLLAHELGQAGFIIISGLARGIDQAAHRASVASGTVAVLAGGHDRIYPPEHV 187 Query: 190 DLLAALL-EHGAAISEMPLGHVPRARDFPRRNRLISGASLGVVIVEAAHRSGSLITARMA 248 DLL A++ HGAAISEMPLGH PRARDFPRRNRLISGASLGVV+VEAAHRSGSLITARMA Sbjct: 188 DLLGAIIGSHGAAISEMPLGHEPRARDFPRRNRLISGASLGVVVVEAAHRSGSLITARMA 247 Query: 249 AEQGREVFAVPGSPIDPRAAGANDLIKQGATLVTEAADVVSAVTPIMERPVMLGAREDDE 308 +EQGREVFAVPGSP+DPR+AG NDLIKQGATLVT AAD++ AV PIMERP+ L RE DE Sbjct: 248 SEQGREVFAVPGSPLDPRSAGTNDLIKQGATLVTTAADIIQAVGPIMERPLPLSLREPDE 307 Query: 309 PLDFATD--SGNRERIIDLLGPSPISIDDLIRMADVSPAVVRAVLLELELAGRLERHGGG 366 L FA D S +R +I+ LLGP+P+SIDDLIRM+ +SPAV+R VLLELELAGRLERHGGG Sbjct: 308 EL-FAPDPESHDRTQILGLLGPTPVSIDDLIRMSGLSPAVLRMVLLELELAGRLERHGGG 366 Query: 367 LVSMI 371 +VS+I Sbjct: 367 MVSLI 371 >ref|YP_318621.1| SMF protein [Nitrobacter winogradskyi Nb-255] gb|ABA05269.1| SMF protein [Nitrobacter winogradskyi Nb-255] Length = 372 Score = 516 bits (1328), Expect = e-144, Method: Compositional matrix adjust. Identities = 276/373 (73%), Positives = 313/373 (83%), Gaps = 3/373 (0%) Query: 1 MHDRSPSPAKLTDTERLNRLRLIRSDNVGPRTFASLLRHFGDAAHALERLPDLARRGGAS 60 M+ R P +L++ +R + LRLIRSDNVGPRTF SL+ HFG A+ AL RLPDLARRGGAS Sbjct: 1 MNIRDPD-RRLSEAQRTDWLRLIRSDNVGPRTFRSLVNHFGSASEALVRLPDLARRGGAS 59 Query: 61 GPGRICSEADAAAELAACRRFGIDLVAPEEAHYPARLATIDDAPPLLAVRGAREVLMRPM 120 P R+C+EA+A ELAA RR G+ L+AP EA YP LATIDDAPPLL RG +V+ RPM Sbjct: 60 RPSRLCTEAEARNELAAARRIGVSLLAPGEAGYPPHLATIDDAPPLLGARGNLDVMERPM 119 Query: 121 IAIVGSRNASGAGLKFAGTLARDLGDAGFVVISGLARGIDQAAHRATVASGTVAVLAGGH 180 IAIVGSRNASGAG KFA TLA DLGD GFV++SGLARGIDQAAHRA+VA GTVAVLAGGH Sbjct: 120 IAIVGSRNASGAGHKFAQTLAHDLGDTGFVIVSGLARGIDQAAHRASVARGTVAVLAGGH 179 Query: 181 DRIYPPEHEDLLAALLEHGAAISEMPLGHVPRARDFPRRNRLISGASLGVVIVEAAHRSG 240 DRIYP EHEDLLAA+LE G AISEMP+GHVPRARDFPRRNRLISGA++GVV+VEAAHRSG Sbjct: 180 DRIYPLEHEDLLAAVLESGGAISEMPMGHVPRARDFPRRNRLISGAAIGVVVVEAAHRSG 239 Query: 241 SLITARMAAEQGREVFAVPGSPIDPRAAGANDLIKQGATLVTEAADVVSAVTPIMERPVM 300 SLITARMAAEQGREVFAVPGSP+DPRA G NDLIKQGATL+TEAADV++AV PI+ RPV Sbjct: 240 SLITARMAAEQGREVFAVPGSPLDPRATGTNDLIKQGATLITEAADVINAVRPIIRRPVD 299 Query: 301 LGAREDDEPLDFATD--SGNRERIIDLLGPSPISIDDLIRMADVSPAVVRAVLLELELAG 358 L A E + + + + +R RII LLGP+PI +DDLIRMA+ PAVVR VLLELELAG Sbjct: 300 LPAEEPEPGEPWTEEPAASDRARIIALLGPAPIGLDDLIRMANAPPAVVRTVLLELELAG 359 Query: 359 RLERHGGGLVSMI 371 RLERHGGGLVSM+ Sbjct: 360 RLERHGGGLVSMM 372