BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0184.0027.p         (110 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001639503.1| helix-turn-helix HxlR type protein [Methylob...   180   5e-44
ref|NP_771745.1| transcriptional regulator [Bradyrhizobium japon...   180   5e-44
ref|YP_002421085.1| HxlR family transcriptional regulator [Methy...   180   8e-44
ref|YP_001924695.1| HxlR family transcriptional regulator [Methy...   179   9e-44
ref|YP_532116.1| putative transcriptional regulator [Rhodopseudo...   176   1e-42

>ref|YP_001639503.1| helix-turn-helix HxlR type protein [Methylobacterium extorquens
           PA1]
 gb|ABY30432.1| helix-turn-helix HxlR type [Methylobacterium extorquens PA1]
          Length = 135

 Score =  180 bits (457), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 87/110 (79%), Positives = 97/110 (88%)

Query: 1   VASVLSRVGDKWSVLVIMLLRDGPRRFNELKRMINGISQRMLTLTLRGLERDGLVTRTVF 60
           V +VL+R+GDKWSVLV+M+L DGPRRFNELKRMI GISQRMLT TLRGLERDGLVTRT+F
Sbjct: 25  VGTVLARIGDKWSVLVVMMLGDGPRRFNELKRMIGGISQRMLTFTLRGLERDGLVTRTIF 84

Query: 61  PTIPPRVDYELTDLGRGLAVPVMALGEWAFAHLPEIEGARNDFDARNGEG 110
           PTIPPRVDYELT+LGR L  P+ ALG WAFAHLPEI+ AR  FD R+GEG
Sbjct: 85  PTIPPRVDYELTELGRSLREPIQALGAWAFAHLPEIQEARARFDRRSGEG 134


>ref|NP_771745.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 dbj|BAC50370.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 140

 Score =  180 bits (457), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 89/106 (83%), Positives = 95/106 (89%)

Query: 1   VASVLSRVGDKWSVLVIMLLRDGPRRFNELKRMINGISQRMLTLTLRGLERDGLVTRTVF 60
           VASVLSRVGDKWSV VIM+L DGP+RFNELKRMINGISQRMLTLTLRGLERDGLVTRT+F
Sbjct: 32  VASVLSRVGDKWSVFVIMMLGDGPKRFNELKRMINGISQRMLTLTLRGLERDGLVTRTIF 91

Query: 61  PTIPPRVDYELTDLGRGLAVPVMALGEWAFAHLPEIEGARNDFDAR 106
           PTIPPRVDYELTDLGRGL+ PV ALG+WA  HL +IE AR  FD R
Sbjct: 92  PTIPPRVDYELTDLGRGLSRPVEALGKWAMEHLAQIEAARTRFDKR 137


>ref|YP_002421085.1| HxlR family transcriptional regulator [Methylobacterium
           chloromethanicum CM4]
 gb|ACK83157.1| transcriptional regulator, HxlR family [Methylobacterium
           chloromethanicum CM4]
          Length = 135

 Score =  180 bits (456), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 87/110 (79%), Positives = 96/110 (87%)

Query: 1   VASVLSRVGDKWSVLVIMLLRDGPRRFNELKRMINGISQRMLTLTLRGLERDGLVTRTVF 60
           V +VL+R+GDKWSVLV+M+L DGPRRFNELKRMI GISQRMLT TLRGLERDGLVTRT+F
Sbjct: 25  VGTVLARIGDKWSVLVVMMLGDGPRRFNELKRMIGGISQRMLTFTLRGLERDGLVTRTIF 84

Query: 61  PTIPPRVDYELTDLGRGLAVPVMALGEWAFAHLPEIEGARNDFDARNGEG 110
           PTIPPRVDYELT+LGR L  P+ ALG WAFAHLPEI+ AR  FD R GEG
Sbjct: 85  PTIPPRVDYELTELGRSLREPIQALGAWAFAHLPEIQEARARFDRRGGEG 134


>ref|YP_001924695.1| HxlR family transcriptional regulator [Methylobacterium populi
           BJ001]
 gb|ACB80160.1| transcriptional regulator, HxlR family [Methylobacterium populi
           BJ001]
          Length = 135

 Score =  179 bits (455), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 86/109 (78%), Positives = 95/109 (87%)

Query: 1   VASVLSRVGDKWSVLVIMLLRDGPRRFNELKRMINGISQRMLTLTLRGLERDGLVTRTVF 60
           V +VL+R+GDKWSVLV+M+L DGPRRFNELKRMI GISQRMLT TLRGLERDGLVTRT+F
Sbjct: 25  VGTVLARIGDKWSVLVVMMLADGPRRFNELKRMIGGISQRMLTFTLRGLERDGLVTRTIF 84

Query: 61  PTIPPRVDYELTDLGRGLAVPVMALGEWAFAHLPEIEGARNDFDARNGE 109
           PTIPPRVDYELT+LGR L  P+ ALG WAFAHLPEI+ AR  FD R GE
Sbjct: 85  PTIPPRVDYELTELGRSLREPIQALGAWAFAHLPEIQEARARFDRREGE 133


>ref|YP_532116.1| putative transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gb|ABD87797.1| putative transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
          Length = 150

 Score =  176 bits (446), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 86/106 (81%), Positives = 94/106 (88%)

Query: 1   VASVLSRVGDKWSVLVIMLLRDGPRRFNELKRMINGISQRMLTLTLRGLERDGLVTRTVF 60
           VA+VLSRVGDKWSVLVIM+L + P RFNELKRMI GISQRMLTLTLRGLERDGLVTRTVF
Sbjct: 39  VATVLSRVGDKWSVLVIMMLGERPLRFNELKRMIGGISQRMLTLTLRGLERDGLVTRTVF 98

Query: 61  PTIPPRVDYELTDLGRGLAVPVMALGEWAFAHLPEIEGARNDFDAR 106
           PT+PPRVDYELT+LGRGL+ PV  LG+WA  HLP+IEGAR  FD R
Sbjct: 99  PTVPPRVDYELTELGRGLSAPVKELGQWAKQHLPDIEGARESFDRR 144