BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0184.0023.p         (80 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_771750.1| hypothetical protein bsl5110 [Bradyrhizobium ja...    61   7e-08
ref|YP_532113.1| hypothetical protein RPC_2240 [Rhodopseudomonas...    54   1e-05
ref|YP_001206465.1| hypothetical protein BRADO4507 [Bradyrhizobi...    49   2e-04
ref|ZP_01046445.1| hypothetical protein NB311A_17204 [Nitrobacte...    45   0.005
ref|YP_577686.1| hypothetical protein Nham_2436 [Nitrobacter ham...    44   0.007

>ref|NP_771750.1| hypothetical protein bsl5110 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC50375.1| bsl5110 [Bradyrhizobium japonicum USDA 110]
          Length = 94

 Score = 60.8 bits (146), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/76 (50%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 5  GGGRKRKASGRRRRPAGDETAGEGGPDDALVLIAAAAAELAKLARRHKFEVLERLFAMAR 64
          G  R R ASG R   +  E  GEGG D+A+  IA   A L KLA RH+ +VL  L  M +
Sbjct: 20 GKKRARAASGARE-GSRHEEPGEGGADEAVAFIAEQVAVLRKLAERHRLDVLHYLLGMTQ 78

Query: 65 LEADEQQRSRSRRKLS 80
          LEADE  R R++RKLS
Sbjct: 79 LEADEHLRLRTKRKLS 94


>ref|YP_532113.1| hypothetical protein RPC_2240 [Rhodopseudomonas palustris BisB18]
 gb|ABD87794.1| conserved hypothetical protein [Rhodopseudomonas palustris
          BisB18]
          Length = 75

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 35/54 (64%)

Query: 25 AGEGGPDDALVLIAAAAAELAKLARRHKFEVLERLFAMARLEADEQQRSRSRRK 78
          +G+GGPD+A   +A   AELA+LARRH+ ++L  L  MA LEA E  R R R  
Sbjct: 16 SGDGGPDEAAHYLATTVAELARLARRHRLDMLGYLLEMAHLEATELVRQRRRHN 69


>ref|YP_001206465.1| hypothetical protein BRADO4507 [Bradyrhizobium sp. ORS 278]
 emb|CAL78245.1| hypothetical protein BRADO4507 [Bradyrhizobium sp. ORS 278]
          Length = 54

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 34/51 (66%)

Query: 30 PDDALVLIAAAAAELAKLARRHKFEVLERLFAMARLEADEQQRSRSRRKLS 80
          PD A  LIA   A L++LA+RH  ++L+ L  MA LEA+E  R RS+R LS
Sbjct: 4  PDAAAALIAEVTASLSQLAQRHNLDMLDYLLRMANLEAEEHLRLRSKRSLS 54


>ref|ZP_01046445.1| hypothetical protein NB311A_17204 [Nitrobacter sp. Nb-311A]
 gb|EAQ35535.1| hypothetical protein NB311A_17204 [Nitrobacter sp. Nb-311A]
          Length = 77

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 33/50 (66%)

Query: 23 ETAGEGGPDDALVLIAAAAAELAKLARRHKFEVLERLFAMARLEADEQQR 72
          E AG+GGP++A   +A A A LA +ARRH  + L  L  MA++EA++  R
Sbjct: 20 EPAGDGGPNEAARYLAGAVANLALIARRHGLDTLCFLLDMAQMEAEDIVR 69


>ref|YP_577686.1| hypothetical protein Nham_2436 [Nitrobacter hamburgensis X14]
 gb|ABE63226.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
          Length = 76

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 38/61 (62%)

Query: 9  KRKASGRRRRPAGDETAGEGGPDDALVLIAAAAAELAKLARRHKFEVLERLFAMARLEAD 68
           RK   R  R  G E+A +GGPD+A   +AAA A+L  +ARRH  E L  L  MA++EA+
Sbjct: 6  DRKEDSRDNRACGGESASDGGPDEAARYLAAAVADLGLIARRHGLETLGYLLDMAQMEAE 65

Query: 69 E 69
          +
Sbjct: 66 D 66