BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0184.0022.p (817 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_577687.1| DNA topoisomerase I [Nitrobacter hamburgensis X... 1406 0.0 ref|ZP_01046444.1| DNA topoisomerase I [Nitrobacter sp. Nb-311A]... 1405 0.0 ref|YP_001206466.1| DNA topoisomerase I [Bradyrhizobium sp. ORS ... 1400 0.0 ref|YP_318325.1| DNA topoisomerase I [Nitrobacter winogradskyi N... 1400 0.0 ref|NP_948463.1| DNA topoisomerase I [Rhodopseudomonas palustris... 1397 0.0 >ref|YP_577687.1| DNA topoisomerase I [Nitrobacter hamburgensis X14] gb|ABE63227.1| DNA topoisomerase I [Nitrobacter hamburgensis X14] Length = 936 Score = 1406 bits (3640), Expect = 0.0, Method: Compositional matrix adjust. Identities = 696/781 (89%), Positives = 737/781 (94%), Gaps = 1/781 (0%) Query: 1 MNIVIVESPAKAKTINKYLGSSYEVLASFGHVRDLPAKNGSVDPDANFQMIWEVDAKAAS 60 MNIVIVESPAKAKTINKYLG+SYEVLASFGHVRDLPAKNGSVDPDANFQMIWEVD KA Sbjct: 26 MNIVIVESPAKAKTINKYLGASYEVLASFGHVRDLPAKNGSVDPDANFQMIWEVDPKAVG 85 Query: 61 RLNDIAKALKGADRLILATDPDREGEAISWHVLEVMKEKRALKDQKVERVVFNAITKQAV 120 RLNDIAK+LKGAD+LILATDPDREGEAISWHVLEV+K+KRALKDQK+ERVVFNAITKQAV Sbjct: 86 RLNDIAKSLKGADKLILATDPDREGEAISWHVLEVLKQKRALKDQKIERVVFNAITKQAV 145 Query: 121 SEAMKAPRQIDGALVDAYMARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 180 ++AMK PRQIDGALVDAYMARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVC R Sbjct: 146 TDAMKNPRQIDGALVDAYMARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCSR 205 Query: 181 ELEIEKFVPREYWSLVATLLTPRGDAFEARLVGADGKKIARLDIGSGAEAEDFKKAIEAA 240 E+EIEKFVPREYWSL+ATL TPRGD FEARLVGADGKKI RLDIGSGAEAEDF+KAIEAA Sbjct: 206 EIEIEKFVPREYWSLIATLATPRGDTFEARLVGADGKKIQRLDIGSGAEAEDFRKAIEAA 265 Query: 241 LFKVATVEAKPARRNPQAPFTTSTLQQEASRKLGFAPAHTMRIAQRLYEGIDIGGETTGL 300 F V+TVEAKPARRNPQAPFTTSTLQQEASRKLGFAPAHTMRIAQRLYEGIDIGGETTGL Sbjct: 266 NFIVSTVEAKPARRNPQAPFTTSTLQQEASRKLGFAPAHTMRIAQRLYEGIDIGGETTGL 325 Query: 301 ITYMRTDGVQIAPEAITQARKVIGEDYGNAYVPDAPRQYQAKAKNAQEAHEAIRPTDLSR 360 ITYMRTDGVQI AITQARKVIGEDYGNAYVPDAPRQYQ KAKNAQEAHEAIRPTDLSR Sbjct: 326 ITYMRTDGVQIDGSAITQARKVIGEDYGNAYVPDAPRQYQTKAKNAQEAHEAIRPTDLSR 385 Query: 361 RPATIGRRLDADQARLYELIWKRTIASQMESAELERTTVDIEAKAGSRVLELRASGQVIK 420 RPA + RRLDADQARLYELIW RTIASQMESAELERTTVDI A+AGSRVLELRASGQVIK Sbjct: 386 RPADMKRRLDADQARLYELIWIRTIASQMESAELERTTVDIAARAGSRVLELRASGQVIK 445 Query: 421 FDGFLALYQESRDDEEDEDSRRLPAMSEGEAVKRQSLAVTQHFTEPPPRFSEASLVKRME 480 FDGFLALYQE RDDEEDEDSRRLPAMS+GEA++R++L+VTQHFTEPPPRFSEASLVKRME Sbjct: 446 FDGFLALYQEGRDDEEDEDSRRLPAMSDGEALRRENLSVTQHFTEPPPRFSEASLVKRME 505 Query: 481 ELGIGRPSTYASILQVLKDRGYVKLEKKRLHGEDKGRVVVAFLENFFSRYVEYDFTADLE 540 ELGIGRPSTYASILQVLKDRGYVKLEKKRL+GEDKGRVVVAFLENFF+RYVEYDFTA+LE Sbjct: 506 ELGIGRPSTYASILQVLKDRGYVKLEKKRLYGEDKGRVVVAFLENFFARYVEYDFTANLE 565 Query: 541 EQLDRISNNEIAWQQVLQDFWRGFIGAVNDIKDLRVAEVLDALDEMLGPHIYPPRADGGD 600 EQLDRISNNE++WQQVL+DFW FIG VN+IKD+RV+EVLD LD MLGPHIY PR DGGD Sbjct: 566 EQLDRISNNEVSWQQVLKDFWNDFIGVVNEIKDVRVSEVLDVLDNMLGPHIYAPREDGGD 625 Query: 601 VRQCPTCGTGRLNLKAGKFGAFVGCSNYPECRYTRPLAADSAESADRVLGTDPDTGFDVT 660 RQCPTCGTG+LNLKAGKFGAFVGCSNYPECRYTRPLAAD DR+LG DP++G DVT Sbjct: 626 PRQCPTCGTGKLNLKAGKFGAFVGCSNYPECRYTRPLAADGEAGGDRILGKDPESGLDVT 685 Query: 661 VKAGRFGPYIQLGEQKDYAEGEKPKRAGIPKGTSPADVDLELALKLLSLPREIGKHPETG 720 VK+GRFGPYIQLGE DY EGEKPKRAGIPK TSPAD++L+LA+KLLSLPREIGKHPETG Sbjct: 686 VKSGRFGPYIQLGEPSDYGEGEKPKRAGIPKNTSPADMELDLAVKLLSLPREIGKHPETG 745 Query: 721 QPITAGLGRFGPFVKHEKTYASLEAGDEVFDIGLNRAVTLIAEKIAKGPSGRRFXRPPPM 780 +PITAG+GRFGPFV+HEKTYASLEAGDEVFDIGLNRAVTLIAEKIAKGPS RRF P Sbjct: 746 EPITAGIGRFGPFVRHEKTYASLEAGDEVFDIGLNRAVTLIAEKIAKGPS-RRFGADPGK 804 Query: 781 P 781 P Sbjct: 805 P 805 >ref|ZP_01046444.1| DNA topoisomerase I [Nitrobacter sp. Nb-311A] gb|EAQ35534.1| DNA topoisomerase I [Nitrobacter sp. Nb-311A] Length = 910 Score = 1405 bits (3638), Expect = 0.0, Method: Compositional matrix adjust. Identities = 695/781 (88%), Positives = 736/781 (94%), Gaps = 1/781 (0%) Query: 1 MNIVIVESPAKAKTINKYLGSSYEVLASFGHVRDLPAKNGSVDPDANFQMIWEVDAKAAS 60 MNIVIVESPAKAKTINKYLG+SYEVLASFGHVRDLPAKNGSVDPDANFQMIWEVD KAA Sbjct: 1 MNIVIVESPAKAKTINKYLGASYEVLASFGHVRDLPAKNGSVDPDANFQMIWEVDPKAAG 60 Query: 61 RLNDIAKALKGADRLILATDPDREGEAISWHVLEVMKEKRALKDQKVERVVFNAITKQAV 120 RLNDIAK+LKGAD+LILATDPDREGEAISWHVLEV+K+KRALKDQK+ERVVFNAITKQAV Sbjct: 61 RLNDIAKSLKGADKLILATDPDREGEAISWHVLEVLKQKRALKDQKIERVVFNAITKQAV 120 Query: 121 SEAMKAPRQIDGALVDAYMARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 180 +EAMK+PRQIDGALVDAYMARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR Sbjct: 121 TEAMKSPRQIDGALVDAYMARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 180 Query: 181 ELEIEKFVPREYWSLVATLLTPRGDAFEARLVGADGKKIARLDIGSGAEAEDFKKAIEAA 240 ELEIEKFVPREYWSLVATL TPRG+ FEARLVGADGKKI RLDIGSGAEA++F+KAIEAA Sbjct: 181 ELEIEKFVPREYWSLVATLATPRGETFEARLVGADGKKIQRLDIGSGAEADEFRKAIEAA 240 Query: 241 LFKVATVEAKPARRNPQAPFTTSTLQQEASRKLGFAPAHTMRIAQRLYEGIDIGGETTGL 300 F V+TVEAKPARRNPQAPFTTSTLQQEASRKLGFAPAHTMRIAQRLYEGID+GGETTGL Sbjct: 241 NFTVSTVEAKPARRNPQAPFTTSTLQQEASRKLGFAPAHTMRIAQRLYEGIDVGGETTGL 300 Query: 301 ITYMRTDGVQIAPEAITQARKVIGEDYGNAYVPDAPRQYQAKAKNAQEAHEAIRPTDLSR 360 ITYMRTDGVQI AITQARKVIGEDYGNAYVPDAPRQYQ KAKNAQEAHEAIRPTDLSR Sbjct: 301 ITYMRTDGVQIDGSAITQARKVIGEDYGNAYVPDAPRQYQTKAKNAQEAHEAIRPTDLSR 360 Query: 361 RPATIGRRLDADQARLYELIWKRTIASQMESAELERTTVDIEAKAGSRVLELRASGQVIK 420 RP+ + RRLDADQARLYELIW RTIASQMESAELERTTVDI A+AG+R LELRASGQVIK Sbjct: 361 RPSDMKRRLDADQARLYELIWIRTIASQMESAELERTTVDIAARAGARTLELRASGQVIK 420 Query: 421 FDGFLALYQESRDDEEDEDSRRLPAMSEGEAVKRQSLAVTQHFTEPPPRFSEASLVKRME 480 FDGFLALYQE RDDEEDED RRLPAMSEGEA+KR+ L+VTQHFTEPPPRFSEASLVKRME Sbjct: 421 FDGFLALYQEGRDDEEDEDGRRLPAMSEGEALKREDLSVTQHFTEPPPRFSEASLVKRME 480 Query: 481 ELGIGRPSTYASILQVLKDRGYVKLEKKRLHGEDKGRVVVAFLENFFSRYVEYDFTADLE 540 ELGIGRPSTYASILQVLKDRGYVKLEKKRL+GEDKGRVV+AFLENFF+RYVEYDFTA+LE Sbjct: 481 ELGIGRPSTYASILQVLKDRGYVKLEKKRLYGEDKGRVVIAFLENFFARYVEYDFTANLE 540 Query: 541 EQLDRISNNEIAWQQVLQDFWRGFIGAVNDIKDLRVAEVLDALDEMLGPHIYPPRADGGD 600 EQLDRISNNEI+WQQVL+DFW FIG VN+IKD+RV+EVLD LD MLGPHIY PR DGGD Sbjct: 541 EQLDRISNNEISWQQVLKDFWDDFIGVVNEIKDVRVSEVLDVLDNMLGPHIYAPREDGGD 600 Query: 601 VRQCPTCGTGRLNLKAGKFGAFVGCSNYPECRYTRPLAADSAESADRVLGTDPDTGFDVT 660 RQCPTCGTGRLNLKAGKFGAFVGCSNYP+CRYTRPLAAD DRVLG DP++G DV Sbjct: 601 PRQCPTCGTGRLNLKAGKFGAFVGCSNYPDCRYTRPLAADGDAGGDRVLGKDPESGLDVA 660 Query: 661 VKAGRFGPYIQLGEQKDYAEGEKPKRAGIPKGTSPADVDLELALKLLSLPREIGKHPETG 720 VK+GRFGPYIQLGE DYAEGEKPKRAGIPK TSPAD++L+LA+KLLSLPREIGKHPETG Sbjct: 661 VKSGRFGPYIQLGEATDYAEGEKPKRAGIPKNTSPADMELDLAVKLLSLPREIGKHPETG 720 Query: 721 QPITAGLGRFGPFVKHEKTYASLEAGDEVFDIGLNRAVTLIAEKIAKGPSGRRFXRPPPM 780 PITAG+GRFGPFV+HEKTYASLEAGDEVFDIGLNRAVTLIAEK+AKGPS RRF P Sbjct: 721 APITAGIGRFGPFVRHEKTYASLEAGDEVFDIGLNRAVTLIAEKVAKGPS-RRFGADPGK 779 Query: 781 P 781 P Sbjct: 780 P 780 >ref|YP_001206466.1| DNA topoisomerase I [Bradyrhizobium sp. ORS 278] emb|CAL78246.1| DNA topoisomerase I [Bradyrhizobium sp. ORS 278] Length = 915 Score = 1400 bits (3624), Expect = 0.0, Method: Compositional matrix adjust. Identities = 708/778 (91%), Positives = 739/778 (94%), Gaps = 1/778 (0%) Query: 1 MNIVIVESPAKAKTINKYLGSSYEVLASFGHVRDLPAKNGSVDPDANFQMIWEVDAKAAS 60 MNIVIVESPAKAKTINKYLGSSYEVLASFGHVRDLPAKNGSVDP+ NF+MIWEVD KAA Sbjct: 1 MNIVIVESPAKAKTINKYLGSSYEVLASFGHVRDLPAKNGSVDPEENFRMIWEVDPKAAG 60 Query: 61 RLNDIAKALKGADRLILATDPDREGEAISWHVLEVMKEKRALKDQKVERVVFNAITKQAV 120 RLNDIAK+LKGADRLILATDPDREGEAISWHVLEVMKEKRALKDQK+ERVVFNAITKQAV Sbjct: 61 RLNDIAKSLKGADRLILATDPDREGEAISWHVLEVMKEKRALKDQKIERVVFNAITKQAV 120 Query: 121 SEAMKAPRQIDGALVDAYMARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 180 SEAMK PRQIDGALVDAYMARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR Sbjct: 121 SEAMKNPRQIDGALVDAYMARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 180 Query: 181 ELEIEKFVPREYWSLVATLLTPRGDAFEARLVGADGKKIARLDIGSGAEAEDFKKAIEAA 240 ELEIEKFVPREYWSL+ATL TPRGD FEARLVGADGKKI RLDIG+GAEAEDFK A+ AA Sbjct: 181 ELEIEKFVPREYWSLIATLATPRGDTFEARLVGADGKKIQRLDIGTGAEAEDFKNALNAA 240 Query: 241 LFKVATVEAKPARRNPQAPFTTSTLQQEASRKLGFAPAHTMRIAQRLYEGIDIGGETTGL 300 + VATV+AKPARRNPQAPFTTSTLQQEASRKLGFAPAHTMRIAQRLYEGIDIGGETTGL Sbjct: 241 TYSVATVDAKPARRNPQAPFTTSTLQQEASRKLGFAPAHTMRIAQRLYEGIDIGGETTGL 300 Query: 301 ITYMRTDGVQIAPEAITQARKVIGEDYGNAYVPDAPRQYQAKAKNAQEAHEAIRPTDLSR 360 ITYMRTDGVQIAPEAITQARKVIGE YGN YVPD+PRQYQ KAKNAQEAHEAIRPTDLSR Sbjct: 301 ITYMRTDGVQIAPEAITQARKVIGEIYGNKYVPDSPRQYQTKAKNAQEAHEAIRPTDLSR 360 Query: 361 RPATIGRRLDADQARLYELIWKRTIASQMESAELERTTVDIEAKAGSRVLELRASGQVIK 420 +PA + +RLD DQA+LYELIW RTIASQMESAELERTTVDI AKAG R LELRA+GQVIK Sbjct: 361 KPAELRKRLDDDQAKLYELIWTRTIASQMESAELERTTVDIVAKAGGRTLELRATGQVIK 420 Query: 421 FDGFLALYQESRDDEEDEDSRRLPAMSEGEAVKRQSLAVTQHFTEPPPRFSEASLVKRME 480 FDGFLALYQE RDDEEDEDSRRLP MS+GEA+KRQ+LAVTQHFTEPPPRFSEASLVKRME Sbjct: 421 FDGFLALYQEGRDDEEDEDSRRLPQMSQGEALKRQNLAVTQHFTEPPPRFSEASLVKRME 480 Query: 481 ELGIGRPSTYASILQVLKDRGYVKLEKKRLHGEDKGRVVVAFLENFFSRYVEYDFTADLE 540 ELGIGRPSTYASIL VLK RGYVKLEKKRLHGEDKGRVV+AFLENFF RYVEYDFTADLE Sbjct: 481 ELGIGRPSTYASILDVLKARGYVKLEKKRLHGEDKGRVVIAFLENFFRRYVEYDFTADLE 540 Query: 541 EQLDRISNNEIAWQQVLQDFWRGFIGAVNDIKDLRVAEVLDALDEMLGPHIYPPRADGGD 600 EQLDRISNNEIAWQQVL+DFW GFIGAV+DIKDLRVA+VLDALDEMLGPHIYPPR DGGD Sbjct: 541 EQLDRISNNEIAWQQVLKDFWTGFIGAVDDIKDLRVAQVLDALDEMLGPHIYPPREDGGD 600 Query: 601 VRQCPTCGTGRLNLKAGKFGAFVGCSNYPECRYTRPLAADSAESADRVLGTDPDTGFDVT 660 VRQCPTCGTGRLNLKAGKFGAFVGCSNYPECRYTRPLAADS +ADR+LG DPD+G +V Sbjct: 601 VRQCPTCGTGRLNLKAGKFGAFVGCSNYPECRYTRPLAADSEAAADRMLGQDPDSGLEVA 660 Query: 661 VKAGRFGPYIQLGEQKDYAEGEKPKRAGIPKGTSPADVDLELALKLLSLPREIGKHPETG 720 VKAGRFGPYIQLGEQKDYAEGEKPKRAGIPKGT P+DVDL+LALKLLSLPREIGKHPETG Sbjct: 661 VKAGRFGPYIQLGEQKDYAEGEKPKRAGIPKGTQPSDVDLDLALKLLSLPREIGKHPETG 720 Query: 721 QPITAGLGRFGPFVKHEKTYASLEAGDEVFDIGLNRAVTLIAEKIAKGPSGRRFXRPP 778 PITAGLGRFGPFVKH+KTYASLEAGDEVFDIGLNRAVTLIAEK+AKGPS +RF P Sbjct: 721 LPITAGLGRFGPFVKHDKTYASLEAGDEVFDIGLNRAVTLIAEKVAKGPS-KRFGADP 777 >ref|YP_318325.1| DNA topoisomerase I [Nitrobacter winogradskyi Nb-255] gb|ABA04973.1| DNA topoisomerase I [Nitrobacter winogradskyi Nb-255] Length = 911 Score = 1400 bits (3624), Expect = 0.0, Method: Compositional matrix adjust. Identities = 689/781 (88%), Positives = 737/781 (94%), Gaps = 1/781 (0%) Query: 1 MNIVIVESPAKAKTINKYLGSSYEVLASFGHVRDLPAKNGSVDPDANFQMIWEVDAKAAS 60 MNIVIVESPAKAKTINKYLG+SYEVLASFGHVRDLPAKNGSVDPDANFQMIWEVD KAA Sbjct: 1 MNIVIVESPAKAKTINKYLGTSYEVLASFGHVRDLPAKNGSVDPDANFQMIWEVDPKAAG 60 Query: 61 RLNDIAKALKGADRLILATDPDREGEAISWHVLEVMKEKRALKDQKVERVVFNAITKQAV 120 RLNDIAK+LKGAD+LILATDPDREGEAISWHVLEV+K+KRALKDQK+ERVVFNAITKQAV Sbjct: 61 RLNDIAKSLKGADKLILATDPDREGEAISWHVLEVLKQKRALKDQKIERVVFNAITKQAV 120 Query: 121 SEAMKAPRQIDGALVDAYMARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 180 +EAMK+PRQIDGALVDAYMARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR Sbjct: 121 TEAMKSPRQIDGALVDAYMARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 180 Query: 181 ELEIEKFVPREYWSLVATLLTPRGDAFEARLVGADGKKIARLDIGSGAEAEDFKKAIEAA 240 ELEIEKFVPREYWSLV TL TPRG+ F+ARLVGADGKKI RLDIG+GAEAEDF+KAIEAA Sbjct: 181 ELEIEKFVPREYWSLVTTLATPRGETFDARLVGADGKKIQRLDIGNGAEAEDFRKAIEAA 240 Query: 241 LFKVATVEAKPARRNPQAPFTTSTLQQEASRKLGFAPAHTMRIAQRLYEGIDIGGETTGL 300 F V+TVEAKPARRNPQAPFTTSTLQQEASRKLGFAPAHTMRIAQRLYEGID+GGETTGL Sbjct: 241 NFTVSTVEAKPARRNPQAPFTTSTLQQEASRKLGFAPAHTMRIAQRLYEGIDVGGETTGL 300 Query: 301 ITYMRTDGVQIAPEAITQARKVIGEDYGNAYVPDAPRQYQAKAKNAQEAHEAIRPTDLSR 360 ITYMRTDGVQI AITQARKVIGEDYG+AYVP+APRQYQ KAKNAQEAHEAIRPTDLSR Sbjct: 301 ITYMRTDGVQIDGSAITQARKVIGEDYGHAYVPEAPRQYQTKAKNAQEAHEAIRPTDLSR 360 Query: 361 RPATIGRRLDADQARLYELIWKRTIASQMESAELERTTVDIEAKAGSRVLELRASGQVIK 420 RP+ + RRLDADQARLYELIW RTIASQMESAELERTTVDI A+AG+R LELRASGQV+K Sbjct: 361 RPSDMKRRLDADQARLYELIWIRTIASQMESAELERTTVDIAARAGARTLELRASGQVVK 420 Query: 421 FDGFLALYQESRDDEEDEDSRRLPAMSEGEAVKRQSLAVTQHFTEPPPRFSEASLVKRME 480 FDGFLALYQE RDDEEDEDSRRLPAMSEGEA++R++L+VTQHFTEPPPRFSEASLVKRME Sbjct: 421 FDGFLALYQEGRDDEEDEDSRRLPAMSEGEALRRENLSVTQHFTEPPPRFSEASLVKRME 480 Query: 481 ELGIGRPSTYASILQVLKDRGYVKLEKKRLHGEDKGRVVVAFLENFFSRYVEYDFTADLE 540 ELGIGRPSTYASILQVLKDRGYVKLEKKRL+GEDKGRVV+AFLENFF+RYVEYDFTA+LE Sbjct: 481 ELGIGRPSTYASILQVLKDRGYVKLEKKRLYGEDKGRVVIAFLENFFARYVEYDFTANLE 540 Query: 541 EQLDRISNNEIAWQQVLQDFWRGFIGAVNDIKDLRVAEVLDALDEMLGPHIYPPRADGGD 600 EQLDRISNNE++WQQVL+DFW FIG VN+IKD+RV+EVLD LD MLGPHIY PR DGGD Sbjct: 541 EQLDRISNNEVSWQQVLKDFWDDFIGVVNEIKDVRVSEVLDVLDNMLGPHIYAPREDGGD 600 Query: 601 VRQCPTCGTGRLNLKAGKFGAFVGCSNYPECRYTRPLAADSAESADRVLGTDPDTGFDVT 660 RQCPTCGTGRLNLKAGKFGAFVGCSNYPECR+TRPLAAD DRVLG DP++G DV Sbjct: 601 PRQCPTCGTGRLNLKAGKFGAFVGCSNYPECRHTRPLAADGEAGGDRVLGKDPESGLDVA 660 Query: 661 VKAGRFGPYIQLGEQKDYAEGEKPKRAGIPKGTSPADVDLELALKLLSLPREIGKHPETG 720 VK+GRFGPYIQLGE DY EGEKPKRAGIPK TSPAD++L+LA+KLLSLPREIGKHPETG Sbjct: 661 VKSGRFGPYIQLGEASDYGEGEKPKRAGIPKNTSPADIELDLAVKLLSLPREIGKHPETG 720 Query: 721 QPITAGLGRFGPFVKHEKTYASLEAGDEVFDIGLNRAVTLIAEKIAKGPSGRRFXRPPPM 780 +PITAG+GRFGPFV+HEKTYASLEAGDEVFDIGLNRAVTLIAEK+AKGPS RRF P Sbjct: 721 EPITAGIGRFGPFVRHEKTYASLEAGDEVFDIGLNRAVTLIAEKVAKGPS-RRFGADPGK 779 Query: 781 P 781 P Sbjct: 780 P 780 >ref|NP_948463.1| DNA topoisomerase I [Rhodopseudomonas palustris CGA009] emb|CAE28565.1| DNA topoisomerase I [Rhodopseudomonas palustris CGA009] Length = 911 Score = 1397 bits (3617), Expect = 0.0, Method: Compositional matrix adjust. Identities = 685/779 (87%), Positives = 734/779 (94%), Gaps = 1/779 (0%) Query: 1 MNIVIVESPAKAKTINKYLGSSYEVLASFGHVRDLPAKNGSVDPDANFQMIWEVDAKAAS 60 MN+VIVESPAKAKTINKYLGSSYEVLASFGHVRDLPAKNGSVDPDA+FQMIWEVD KAAS Sbjct: 1 MNLVIVESPAKAKTINKYLGSSYEVLASFGHVRDLPAKNGSVDPDADFQMIWEVDPKAAS 60 Query: 61 RLNDIAKALKGADRLILATDPDREGEAISWHVLEVMKEKRALKDQKVERVVFNAITKQAV 120 RLNDIAKALKGAD+LILATDPDREGEAISWHVLEVMK+KRALKDQ+VERVVFNAITKQ+V Sbjct: 61 RLNDIAKALKGADKLILATDPDREGEAISWHVLEVMKQKRALKDQQVERVVFNAITKQSV 120 Query: 121 SEAMKAPRQIDGALVDAYMARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 180 ++AMK PRQIDGALVDAYMARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR Sbjct: 121 TDAMKHPRQIDGALVDAYMARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR 180 Query: 181 ELEIEKFVPREYWSLVATLLTPRGDAFEARLVGADGKKIARLDIGSGAEAEDFKKAIEAA 240 E EIEKFVPREYWSL+AT+ TPRG+ FEARLVGADGKKI RLDIG+GAEAEDFKKAIEAA Sbjct: 181 ETEIEKFVPREYWSLIATMATPRGETFEARLVGADGKKIQRLDIGTGAEAEDFKKAIEAA 240 Query: 241 LFKVATVEAKPARRNPQAPFTTSTLQQEASRKLGFAPAHTMRIAQRLYEGIDIGGETTGL 300 F+VATVEAKPARRNP APFTTSTLQQEASRKLGFAPAHTMR+AQRLYEG+DIGGET GL Sbjct: 241 NFRVATVEAKPARRNPYAPFTTSTLQQEASRKLGFAPAHTMRVAQRLYEGVDIGGETVGL 300 Query: 301 ITYMRTDGVQIAPEAITQARKVIGEDYGNAYVPDAPRQYQAKAKNAQEAHEAIRPTDLSR 360 ITYMRTDGVQI AITQARKVI ED+GNAYVPDAPRQY AKAKNAQEAHEAIRPTDLSR Sbjct: 301 ITYMRTDGVQIDSSAITQARKVIAEDFGNAYVPDAPRQYTAKAKNAQEAHEAIRPTDLSR 360 Query: 361 RPATIGRRLDADQARLYELIWKRTIASQMESAELERTTVDIEAKAGSRVLELRASGQVIK 420 RP+ + R LD+DQARLYELIW RT+ASQMESAELERTTVDIEAKAGSRVLELRA+GQV+K Sbjct: 361 RPSDVSRNLDSDQARLYELIWIRTVASQMESAELERTTVDIEAKAGSRVLELRATGQVVK 420 Query: 421 FDGFLALYQES-RDDEEDEDSRRLPAMSEGEAVKRQSLAVTQHFTEPPPRFSEASLVKRM 479 FDGFLA YQE DD EDEDSRRLPAMSE EA+KR++LAVTQHFTEPPPRFSEASLVKRM Sbjct: 421 FDGFLAAYQEGRDDDSEDEDSRRLPAMSENEALKREALAVTQHFTEPPPRFSEASLVKRM 480 Query: 480 EELGIGRPSTYASILQVLKDRGYVKLEKKRLHGEDKGRVVVAFLENFFSRYVEYDFTADL 539 EELGIGRPSTYASILQVLKDRGYV+LEKKRLHGEDKGRVVVAFLE+FF+RYVEYDFTA L Sbjct: 481 EELGIGRPSTYASILQVLKDRGYVRLEKKRLHGEDKGRVVVAFLESFFTRYVEYDFTAGL 540 Query: 540 EEQLDRISNNEIAWQQVLQDFWRGFIGAVNDIKDLRVAEVLDALDEMLGPHIYPPRADGG 599 EE LDRISNNE++W+QVL DFWR FIGAV++IKDLRVA+VLD LDEMLGPHIYP R DGG Sbjct: 541 EEDLDRISNNEVSWKQVLSDFWRDFIGAVDEIKDLRVAQVLDVLDEMLGPHIYPAREDGG 600 Query: 600 DVRQCPTCGTGRLNLKAGKFGAFVGCSNYPECRYTRPLAADSAESADRVLGTDPDTGFDV 659 D RQCP+CGTG+LNLKAGKFGAFVGCSNYPECRYTRPLA+DSA ADRVLGTDPD+G +V Sbjct: 601 DPRQCPSCGTGKLNLKAGKFGAFVGCSNYPECRYTRPLASDSAGDADRVLGTDPDSGLEV 660 Query: 660 TVKAGRFGPYIQLGEQKDYAEGEKPKRAGIPKGTSPADVDLELALKLLSLPREIGKHPET 719 VK+GRFGPYIQLGE KDYAEGEKPKRAGIPKGTSP+DVDLE+ALKLL+LPRE+GKHPET Sbjct: 661 AVKSGRFGPYIQLGEAKDYAEGEKPKRAGIPKGTSPSDVDLEMALKLLALPREVGKHPET 720 Query: 720 GQPITAGLGRFGPFVKHEKTYASLEAGDEVFDIGLNRAVTLIAEKIAKGPSGRRFXRPP 778 GQPI AG+GRFGP+V+HEKTYASLEAGD+V IGLNRAVTLIAEK+AKGPS RF P Sbjct: 721 GQPIKAGIGRFGPYVQHEKTYASLEAGDDVHTIGLNRAVTLIAEKVAKGPSKGRFGSDP 779