BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0184.0018.p         (375 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_772534.1| ABC transporter permease protein [Bradyrhizobiu...   460   e-127
ref|YP_576600.1| hypothetical protein Nham_1315 [Nitrobacter ham...   446   e-123
ref|YP_001206998.1| putative ABC transporter permease [Bradyrhiz...   442   e-122
ref|YP_001241422.1| putative ABC transporter permease [Bradyrhiz...   440   e-121
ref|YP_485247.1| hypothetical protein RPB_1627 [Rhodopseudomonas...   428   e-118

>ref|NP_772534.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA
           110]
 dbj|BAC51159.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA
           110]
          Length = 367

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 232/239 (97%), Positives = 238/239 (99%)

Query: 137 GAVLAASGKVLIHPRSFRLTSTVHHLEQVCWRAVPIVVLITFLIGCIISQQGIFHFRRFG 196
           GAVLAA G+VLIHPRSFRLTSTVHH+EQVCWRAVPI+VLITFLIGCII+QQGIFHFRRFG
Sbjct: 129 GAVLAAGGRVLIHPRSFRLTSTVHHMEQVCWRAVPIIVLITFLIGCIIAQQGIFHFRRFG 188

Query: 197 ADIFVVDMLGVLVLREIGVLLVAIMVAGRSGSAYTAELGSMKMREEIDALRTMGFDPIEV 256
           ADIFVVDMLGVLVLREIGVLLVAIMVAGRSGSAYTAELGSMKMREEIDALRTMGFDPIEV
Sbjct: 189 ADIFVVDMLGVLVLREIGVLLVAIMVAGRSGSAYTAELGSMKMREEIDALRTMGFDPIEV 248

Query: 257 LILPRMLALVLALPILAFLGAMAALYGGGLVAWLYGGVDPEAFLLRLRDAISIDHFIVGM 316
           L+LPRMLALVLALPILAFLGAMAALYGGGLVAWLYGGVDPEAFLLRLRDAISIDHFIVG+
Sbjct: 249 LVLPRMLALVLALPILAFLGAMAALYGGGLVAWLYGGVDPEAFLLRLRDAISIDHFIVGI 308

Query: 317 VKAPVMAAVIGIVACVEGLAVQGSAESLGQHTTASVVKGIFFVIVMDGVFAIFFASIGM 375
           VKAPVMAAVIGIVACVEGLAVQGSAESLGQHTTASVVKGIFFVIVMDGVFAIFFASIGM
Sbjct: 309 VKAPVMAAVIGIVACVEGLAVQGSAESLGQHTTASVVKGIFFVIVMDGVFAIFFASIGM 367


>ref|YP_576600.1| hypothetical protein Nham_1315 [Nitrobacter hamburgensis X14]
 gb|ABE62140.1| protein of unknown function DUF140 [Nitrobacter hamburgensis X14]
          Length = 377

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 225/239 (94%), Positives = 236/239 (98%)

Query: 137 GAVLAASGKVLIHPRSFRLTSTVHHLEQVCWRAVPIVVLITFLIGCIISQQGIFHFRRFG 196
           GAVLAASG+V+ HPRSFRLTSTVHHLEQVCWRAVPIVVLITFLIGCIISQQGIFHFR+FG
Sbjct: 139 GAVLAASGRVMRHPRSFRLTSTVHHLEQVCWRAVPIVVLITFLIGCIISQQGIFHFRKFG 198

Query: 197 ADIFVVDMLGVLVLREIGVLLVAIMVAGRSGSAYTAELGSMKMREEIDALRTMGFDPIEV 256
           ADIFVVDMLGVLVLREIGVLLVAIMVAGRSGSAYTAELGSMKMREEIDALRTMGFDPIEV
Sbjct: 199 ADIFVVDMLGVLVLREIGVLLVAIMVAGRSGSAYTAELGSMKMREEIDALRTMGFDPIEV 258

Query: 257 LILPRMLALVLALPILAFLGAMAALYGGGLVAWLYGGVDPEAFLLRLRDAISIDHFIVGM 316
           L+LPRMLALV+ALPILAFLGA+AALYGGGLVAWLYGGV PEAFL+RLRDAISIDHF+VGM
Sbjct: 259 LVLPRMLALVIALPILAFLGAIAALYGGGLVAWLYGGVQPEAFLIRLRDAISIDHFVVGM 318

Query: 317 VKAPVMAAVIGIVACVEGLAVQGSAESLGQHTTASVVKGIFFVIVMDGVFAIFFASIGM 375
           +KAPVMAAVIGIVACVEGLAV+GSAESLGQ TT+SVVKGIFFVIVMDGVFAIFFASIGM
Sbjct: 319 IKAPVMAAVIGIVACVEGLAVEGSAESLGQRTTSSVVKGIFFVIVMDGVFAIFFASIGM 377


>ref|YP_001206998.1| putative ABC transporter permease [Bradyrhizobium sp. ORS 278]
 emb|CAL78781.1| putative ABC transporter (permease protein) [Bradyrhizobium sp. ORS
           278]
          Length = 377

 Score =  442 bits (1137), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 218/239 (91%), Positives = 235/239 (98%)

Query: 137 GAVLAASGKVLIHPRSFRLTSTVHHLEQVCWRAVPIVVLITFLIGCIISQQGIFHFRRFG 196
           GAV+ ASG+VL+HPRSFRLTST+HHLEQVCWRAVPI+VLITFLIGCII+QQGIFHFRRFG
Sbjct: 139 GAVIVASGRVLVHPRSFRLTSTIHHLEQVCWRAVPIIVLITFLIGCIIAQQGIFHFRRFG 198

Query: 197 ADIFVVDMLGVLVLREIGVLLVAIMVAGRSGSAYTAELGSMKMREEIDALRTMGFDPIEV 256
           ADIFVVDMLGVLVLREIGVLLVAIM+AGRSGSAYTAELGSMKMREEIDALRTMGFDPIEV
Sbjct: 199 ADIFVVDMLGVLVLREIGVLLVAIMIAGRSGSAYTAELGSMKMREEIDALRTMGFDPIEV 258

Query: 257 LILPRMLALVLALPILAFLGAMAALYGGGLVAWLYGGVDPEAFLLRLRDAISIDHFIVGM 316
           LILPRMLALV+ALPIL+FLG +AALYGGGLVAW YGGVDPEAFLLRLRDAISIDHF VG+
Sbjct: 259 LILPRMLALVIALPILSFLGDIAALYGGGLVAWFYGGVDPEAFLLRLRDAISIDHFTVGL 318

Query: 317 VKAPVMAAVIGIVACVEGLAVQGSAESLGQHTTASVVKGIFFVIVMDGVFAIFFASIGM 375
           +KAPVMAAVIGIVACVEGLAV+GSAESLG+HTT+SVVKGIFFVIVMDGVFAIFFA++GM
Sbjct: 319 LKAPVMAAVIGIVACVEGLAVEGSAESLGRHTTSSVVKGIFFVIVMDGVFAIFFAAVGM 377


>ref|YP_001241422.1| putative ABC transporter permease [Bradyrhizobium sp. BTAi1]
 gb|ABQ37516.1| putative ABC transporter (permease protein) [Bradyrhizobium sp.
           BTAi1]
          Length = 377

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 218/239 (91%), Positives = 234/239 (97%)

Query: 137 GAVLAASGKVLIHPRSFRLTSTVHHLEQVCWRAVPIVVLITFLIGCIISQQGIFHFRRFG 196
           GAV+ ASG+V IHPRSFRLTST+HHLEQVCWRAVPI+VLITFLIGCII+QQGIFHFRRFG
Sbjct: 139 GAVIVASGRVFIHPRSFRLTSTIHHLEQVCWRAVPIIVLITFLIGCIIAQQGIFHFRRFG 198

Query: 197 ADIFVVDMLGVLVLREIGVLLVAIMVAGRSGSAYTAELGSMKMREEIDALRTMGFDPIEV 256
           ADIFVVDMLGVLVLREIGVLLVAIM+AGRSGSAYTAELGSMKMREEIDALRTMGFDPIEV
Sbjct: 199 ADIFVVDMLGVLVLREIGVLLVAIMIAGRSGSAYTAELGSMKMREEIDALRTMGFDPIEV 258

Query: 257 LILPRMLALVLALPILAFLGAMAALYGGGLVAWLYGGVDPEAFLLRLRDAISIDHFIVGM 316
           LILPRMLALV+ALPIL+FLG +AALYGGGLVAW YGGVDPEAFLLRLR+AISIDHF VG+
Sbjct: 259 LILPRMLALVIALPILSFLGDIAALYGGGLVAWFYGGVDPEAFLLRLREAISIDHFTVGL 318

Query: 317 VKAPVMAAVIGIVACVEGLAVQGSAESLGQHTTASVVKGIFFVIVMDGVFAIFFASIGM 375
           +KAPVMAAVIGIVACVEGLAVQGSAESLG+HTT+SVVKGIFFVIVMDGVFAIFFA++GM
Sbjct: 319 LKAPVMAAVIGIVACVEGLAVQGSAESLGRHTTSSVVKGIFFVIVMDGVFAIFFATVGM 377


>ref|YP_485247.1| hypothetical protein RPB_1627 [Rhodopseudomonas palustris HaA2]
 gb|ABD06336.1| Protein of unknown function DUF140 [Rhodopseudomonas palustris
           HaA2]
          Length = 383

 Score =  428 bits (1100), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 215/239 (89%), Positives = 230/239 (96%)

Query: 137 GAVLAASGKVLIHPRSFRLTSTVHHLEQVCWRAVPIVVLITFLIGCIISQQGIFHFRRFG 196
           GAVLA   + ++HP +FRL STVHHLEQVCWRAVPIVVLITFLIGCII+QQGIFHFRRFG
Sbjct: 145 GAVLAGVLRAILHPSTFRLASTVHHLEQVCWRAVPIVVLITFLIGCIIAQQGIFHFRRFG 204

Query: 197 ADIFVVDMLGVLVLREIGVLLVAIMVAGRSGSAYTAELGSMKMREEIDALRTMGFDPIEV 256
           AD+FVVDMLGVLVLREIGVLLVAIMVAGRSGSAYTAELGSMKMREEIDALRTMGFDPI+V
Sbjct: 205 ADVFVVDMLGVLVLREIGVLLVAIMVAGRSGSAYTAELGSMKMREEIDALRTMGFDPIDV 264

Query: 257 LILPRMLALVLALPILAFLGAMAALYGGGLVAWLYGGVDPEAFLLRLRDAISIDHFIVGM 316
           LI+PR+LAL+LA+PIL FLGAMAALYGGGLVAWLYGGVDPEAFLLRLRDAISI+HF VGM
Sbjct: 265 LIVPRLLALLLAMPILTFLGAMAALYGGGLVAWLYGGVDPEAFLLRLRDAISINHFTVGM 324

Query: 317 VKAPVMAAVIGIVACVEGLAVQGSAESLGQHTTASVVKGIFFVIVMDGVFAIFFASIGM 375
           +KAPVMA VIGIVACVEGLAV+GSAESLGQHTTASVVKGIFFVIVMDGVFAIFFASIG+
Sbjct: 325 IKAPVMALVIGIVACVEGLAVRGSAESLGQHTTASVVKGIFFVIVMDGVFAIFFASIGI 383