BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0184.0012.p (237 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_01044779.1| hypothetical protein NB311A_04594 [Nitrobacte... 159 3e-37 ref|YP_317018.1| hypothetical protein Nwi_0399 [Nitrobacter wino... 157 9e-37 ref|YP_575844.1| hypothetical protein Nham_0494 [Nitrobacter ham... 153 2e-35 ref|YP_530370.1| hypothetical protein RPC_0476 [Rhodopseudomonas... 114 2e-23 ref|NP_769680.1| hypothetical protein bll3040 [Bradyrhizobium ja... 113 3e-23 >ref|ZP_01044779.1| hypothetical protein NB311A_04594 [Nitrobacter sp. Nb-311A] gb|EAQ37560.1| hypothetical protein NB311A_04594 [Nitrobacter sp. Nb-311A] Length = 377 Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 91/222 (40%), Positives = 141/222 (63%) Query: 1 MLQEVAGLFLDDAHRLSAHHVEMFDGILVRLIESVELRTLTTLSRSLADLRLVPRELARR 60 ML++V LFL DA RL+ + + +FD +LVRL+E +E R L LS L+ L P+E R+ Sbjct: 28 MLRQVTDLFLSDADRLNENQIGVFDDVLVRLMEQMEARALAQLSTHLSGSSLAPKETVRQ 87 Query: 61 LANHDDADVAAPILRKCECLPDADLTDIAWMRAEGHLCAIAGRKAVNAELTDILLLRGDS 120 LA H DA VA P+L K L D DL +IA +R HL AI+ R ++ +TD+LL RGDS Sbjct: 88 LAYHQDASVAVPVLTKSARLSDGDLIEIASLRGPQHLLAISHRDTLSEGVTDVLLKRGDS 147 Query: 121 SVLRVLARNPGADLTSAGLAMMVDAAERDDDIAEGLISRKELPRRVLADLVMRSTPRQQA 180 V LA+N GA + G A++V+++++DD +AE L R ++P +VL +L+ R++ + Sbjct: 148 RVSHTLAKNAGARFSELGYAVLVESSQKDDTLAEKLGLRLDIPLKVLRELLSRASAAVRE 207 Query: 181 RLLKLARPDLQDTIRAAINAGAARASAIPPATIDDAEARATV 222 RLLK A P+++ I+AAI + + ++ A ++ AE+ + V Sbjct: 208 RLLKAAPPEMRARIQAAIQSVVEQIASPGLAPVNYAESESMV 249 >ref|YP_317018.1| hypothetical protein Nwi_0399 [Nitrobacter winogradskyi Nb-255] gb|ABA03666.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255] Length = 377 Score = 157 bits (398), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 90/222 (40%), Positives = 143/222 (64%) Query: 1 MLQEVAGLFLDDAHRLSAHHVEMFDGILVRLIESVELRTLTTLSRSLADLRLVPRELARR 60 ML++V LFL DA RL+ + + +FD +LVRL+E +E R L LS +L+ L P+E R+ Sbjct: 28 MLRQVTDLFLSDADRLNENQIGVFDDVLVRLMEQMEARALAQLSTNLSGSSLAPKETVRQ 87 Query: 61 LANHDDADVAAPILRKCECLPDADLTDIAWMRAEGHLCAIAGRKAVNAELTDILLLRGDS 120 LA H DA VA P+L + L + DL +IA +R HL AI+ R+ ++ +TD LL RGD+ Sbjct: 88 LAYHQDASVAVPVLARSARLSEGDLIEIASLRGPQHLLAISHRETLSEGVTDALLKRGDT 147 Query: 121 SVLRVLARNPGADLTSAGLAMMVDAAERDDDIAEGLISRKELPRRVLADLVMRSTPRQQA 180 V LARN GA + G A++V+++E+DD +AE L R ++P +VL +L+ R++ + Sbjct: 148 RVSHTLARNTGARFSERGYAVLVESSEKDDALAEKLGLRLDVPIKVLRELLSRASAAVRE 207 Query: 181 RLLKLARPDLQDTIRAAINAGAARASAIPPATIDDAEARATV 222 RLLK+A P+++ I+AAI + + ++ A ++ AE+ + V Sbjct: 208 RLLKVAPPEMRARIQAAIQSVVEQIASPSLAPVNYAESESMV 249 >ref|YP_575844.1| hypothetical protein Nham_0494 [Nitrobacter hamburgensis X14] gb|ABE61384.1| conserved hypothetical protein [Nitrobacter hamburgensis X14] Length = 377 Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 93/222 (41%), Positives = 134/222 (60%) Query: 1 MLQEVAGLFLDDAHRLSAHHVEMFDGILVRLIESVELRTLTTLSRSLADLRLVPRELARR 60 ML++V LFL DA RL+ + + +FD +LVRL E +E R L LS +L+ P+E R+ Sbjct: 28 MLRQVTDLFLSDADRLNENQIGVFDDVLVRLTEQMEARALAQLSTTLSGSSHAPKETVRQ 87 Query: 61 LANHDDADVAAPILRKCECLPDADLTDIAWMRAEGHLCAIAGRKAVNAELTDILLLRGDS 120 LA H + VAAP+L K L + DL IA +R HL AI+ R A++ +TD+LL RGDS Sbjct: 88 LAYHQEVSVAAPVLSKSARLSEGDLIAIANLRGPQHLLAISSRNALSEGVTDVLLKRGDS 147 Query: 121 SVLRVLARNPGADLTSAGLAMMVDAAERDDDIAEGLISRKELPRRVLADLVMRSTPRQQA 180 V LARN GA + G A +V+++ +DD +AE L R ++P +VL +L+ R+ + Sbjct: 148 HVSHALARNTGARFSEFGYATLVESSAKDDALAEKLGLRMDIPIKVLRELLSRAGAAVRD 207 Query: 181 RLLKLARPDLQDTIRAAINAGAARASAIPPATIDDAEARATV 222 RLLK A P+L+ I+ AI + + A A ID E+ A V Sbjct: 208 RLLKAAPPELRAKIQEAIQSVVEQIVAPALAPIDYTESEAMV 249 >ref|YP_530370.1| hypothetical protein RPC_0476 [Rhodopseudomonas palustris BisB18] gb|ABD86051.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18] Length = 361 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 70/198 (35%), Positives = 109/198 (55%) Query: 2 LQEVAGLFLDDAHRLSAHHVEMFDGILVRLIESVELRTLTTLSRSLADLRLVPRELARRL 61 ++ +A LF+ A A HV +FDG+ L+ + LS LA L P L R L Sbjct: 27 VRRIAELFVAGADNFHADHVNLFDGVFATLVPQTGIEVRGELSERLAALSNAPPVLVRNL 86 Query: 62 ANHDDADVAAPILRKCECLPDADLTDIAWMRAEGHLCAIAGRKAVNAELTDILLLRGDSS 121 A ++ VA P+L + + D L +IA +R + HL AIA R ++ LTD++++RGD + Sbjct: 87 ARDEEVRVAGPLLSRSLLIDDHTLIEIAQLRGQSHLLAIAQRPTLSPPLTDVIVVRGDGA 146 Query: 122 VLRVLARNPGADLTSAGLAMMVDAAERDDDIAEGLISRKELPRRVLADLVMRSTPRQQAR 181 V+R LA N GAD + G + +V A DD +A + R++LP VL DL+ S + R Sbjct: 147 VVRRLAGNAGADFSPVGYSGLVRRAGLDDMLAVTIGQREDLPAPVLKDLLAASVDVVRQR 206 Query: 182 LLKLARPDLQDTIRAAIN 199 L ++A+P + I A++ Sbjct: 207 LFEIAKPAAKIAINRAMS 224 >ref|NP_769680.1| hypothetical protein bll3040 [Bradyrhizobium japonicum USDA 110] dbj|BAC48305.1| bll3040 [Bradyrhizobium japonicum USDA 110] Length = 367 Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 75/206 (36%), Positives = 116/206 (56%), Gaps = 1/206 (0%) Query: 2 LQEVAGLFLDDAHRLSAHHVEMFDGILVRLIESVELRTLTTLSRSLADLRLVPRELARRL 61 L+ V LF+ +A S H+ +FD + LIE +E T L+ LA + P ++ R L Sbjct: 32 LRRVTDLFVGNAVDYSDEHIRVFDDVFQCLIEQIETSARTLLADRLAPIAEAPPKIIRTL 91 Query: 62 ANHDDADVAAPILRKCECLPDADLTDIAWMRAEGHLCAIAGRKAVNAELTDILLLRGDSS 121 A + +VA P+L K E L +A L +IA R + HL AI+ R+ ++A LTD+L+ RG+ Sbjct: 92 ALDEVIEVAGPVLSKSERLDEATLIEIARTRGQAHLKAISLRRVLSAALTDVLVTRGNED 151 Query: 122 VLRVLARNPGADLTSAGLAMMVDAAERDDDIAEGLISRKELPRRVLADLVMRSTPRQQAR 181 V++ NPGA L+ L+ +V AERDDD+A + R +LPR LV +++ + R Sbjct: 152 VVQSTVGNPGAQLSEDSLSDLVMRAERDDDLATCIGLRPDLPRHHYLKLVAKASLSVR-R 210 Query: 182 LLKLARPDLQDTIRAAINAGAARASA 207 L+ A P+L D + + + A R A Sbjct: 211 KLEAAHPELADEVSSVVQEAAQRVRA 236