BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0184.0009.p         (82 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001240259.1| hypothetical protein BBta_4304 [Bradyrhizobi...   121   3e-26
ref|YP_001205420.1| putative signal peptide [Bradyrhizobium sp. ...   121   4e-26
ref|NP_770827.1| hypothetical protein bsl4187 [Bradyrhizobium ja...   118   3e-25
ref|YP_003523882.1| hypothetical protein Slit_1258 [Sideroxydans...    94   9e-18
ref|ZP_01916176.1| hypothetical protein LMED105_07578 [Limnobact...    89   3e-16

>ref|YP_001240259.1| hypothetical protein BBta_4304 [Bradyrhizobium sp. BTAi1]
 gb|ABQ36353.1| putative exported protein of unknown function [Bradyrhizobium sp.
          BTAi1]
          Length = 81

 Score =  121 bits (304), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 63/81 (77%), Positives = 71/81 (87%), Gaps = 1/81 (1%)

Query: 1  MKRIFLAVVIATFAASSAFAQDASCETKAVGKDGKPLAGAAKTSFMKKCTTDACESKAVG 60
          M++ FL   + TFAA SAFAQD SCETKA+GKDGKPLAGAAKTSFMKKC  D+C +KAVG
Sbjct: 1  MRKFFLIAALTTFAAGSAFAQD-SCETKAMGKDGKPLAGAAKTSFMKKCMADSCAAKAVG 59

Query: 61 SDGKKLAGAAKTSFMKKCQSG 81
          SDGKKLAGAAKTSFMKKC++G
Sbjct: 60 SDGKKLAGAAKTSFMKKCEAG 80


>ref|YP_001205420.1| putative signal peptide [Bradyrhizobium sp. ORS 278]
 emb|CAL77190.1| conserved hypothetical protein; putative signal peptide
          [Bradyrhizobium sp. ORS 278]
          Length = 81

 Score =  121 bits (303), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 63/81 (77%), Positives = 72/81 (88%), Gaps = 1/81 (1%)

Query: 1  MKRIFLAVVIATFAASSAFAQDASCETKAVGKDGKPLAGAAKTSFMKKCTTDACESKAVG 60
          MK++FL   +ATFAA SAFA+D SCETKAVGKDGK L+GAAKTSFMKKC  + CE+KAVG
Sbjct: 1  MKKLFLIAALATFAAGSAFAED-SCETKAVGKDGKALSGAAKTSFMKKCMAETCETKAVG 59

Query: 61 SDGKKLAGAAKTSFMKKCQSG 81
          SDGKKLAGAAKTSFMKKC++G
Sbjct: 60 SDGKKLAGAAKTSFMKKCEAG 80


>ref|NP_770827.1| hypothetical protein bsl4187 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC49452.1| bsl4187 [Bradyrhizobium japonicum USDA 110]
          Length = 82

 Score =  118 bits (296), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 61/82 (74%), Positives = 70/82 (85%), Gaps = 1/82 (1%)

Query: 1  MKRIFLAVVIATFAASSAFAQDASCETKAVGKDGKPLAGAAKTSFMKKCTTDACESKAVG 60
          +KRIFLA ++ATFAA SAFA+D +CE+KAVGKDGKPLAGAAKTSF+KKC  DAC  KAV 
Sbjct: 2  LKRIFLAAIVATFAAGSAFAED-TCESKAVGKDGKPLAGAAKTSFLKKCKADACTPKAVS 60

Query: 61 SDGKKLAGAAKTSFMKKCQSGA 82
          +DGK LAGAAK SFMKKC+  A
Sbjct: 61 ADGKPLAGAAKNSFMKKCEVSA 82


>ref|YP_003523882.1| hypothetical protein Slit_1258 [Sideroxydans lithotrophicus ES-1]
 gb|ADE11495.1| hypothetical protein Slit_1258 [Sideroxydans lithotrophicus ES-1]
          Length = 92

 Score = 93.6 bits (231), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 48/86 (55%), Positives = 63/86 (73%), Gaps = 7/86 (8%)

Query: 1  MKRIFLAVVIATFAASSAFAQDASCETKAVGKDGKPLAGAAKTSFMKKCTTDA------- 53
          M+ + +A + + F A+ +FA D+SCE KAVGK GKPL GAAK++FMKKC  DA       
Sbjct: 1  MRNLIVAAIASLFIANLSFAADSSCEAKAVGKSGKPLTGAAKSAFMKKCEKDAAPAAANS 60

Query: 54 CESKAVGSDGKKLAGAAKTSFMKKCQ 79
          CE+KAV  +GK LAGAAK++FMKKC+
Sbjct: 61 CEAKAVDKNGKPLAGAAKSAFMKKCE 86



 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/29 (75%), Positives = 25/29 (86%)

Query: 24 SCETKAVGKDGKPLAGAAKTSFMKKCTTD 52
          SCE KAV K+GKPLAGAAK++FMKKC  D
Sbjct: 60 SCEAKAVDKNGKPLAGAAKSAFMKKCEKD 88


>ref|ZP_01916176.1| hypothetical protein LMED105_07578 [Limnobacter sp. MED105]
 gb|EDM82598.1| hypothetical protein LMED105_07578 [Limnobacter sp. MED105]
          Length = 86

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/85 (55%), Positives = 60/85 (70%), Gaps = 3/85 (3%)

Query: 1  MKRIFLAVVIATFAASSAFAQDASCETKAVGKDGKPLAGAAKTSFMKKCTTD---ACESK 57
          MK+  L   +     + A + +A+C+ KAV K+GKPLAGAAK SFMKKC  +   +CE +
Sbjct: 1  MKKWLLLAALCFSIPAHAQSTEAACQAKAVSKEGKPLAGAAKNSFMKKCLAENKASCEER 60

Query: 58 AVGSDGKKLAGAAKTSFMKKCQSGA 82
          AVG DGKKLAGAAK SFMKKC++ A
Sbjct: 61 AVGKDGKKLAGAAKNSFMKKCEAAA 85