BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0183.0004.p         (143 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001241373.1| hypothetical protein BBta_5506 [Bradyrhizobi...   183   9e-45
ref|YP_317739.1| hypothetical protein Nwi_1125 [Nitrobacter wino...   176   1e-42
ref|NP_772464.1| hypothetical protein bll5824 [Bradyrhizobium ja...   174   4e-42
ref|YP_001206948.1| putative methyl-accepting chemotaxis protein...   169   9e-41
ref|YP_780471.1| hypothetical protein RPE_1541 [Rhodopseudomonas...   157   5e-37

>ref|YP_001241373.1| hypothetical protein BBta_5506 [Bradyrhizobium sp. BTAi1]
 gb|ABQ37467.1| hypothetical protein BBta_5506 [Bradyrhizobium sp. BTAi1]
          Length = 159

 Score =  183 bits (464), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 112/150 (74%), Positives = 120/150 (80%), Gaps = 12/150 (8%)

Query: 1   VLLMLTIGYCWLLNKRLQRLKADEHSLKATIAELITATEIAERAIGGLKHAVRDVNENLG 60
           VLL+LTIGYC LLN RL+RLKADEHSLKA IAELITATEIAERAIGGLK AVRDVNENLG
Sbjct: 15  VLLVLTIGYCMLLNSRLKRLKADEHSLKAVIAELITATEIAERAIGGLKLAVRDVNENLG 74

Query: 61  NQLDAATQMSALLKNQLAEGDHVVRRLSKIALAARP-------SEPAHAPAQAVAPAAPV 113
           NQL AATQMS  L+ QLAE D VVRRLS+IA AARP       SEPA AP  A+  A PV
Sbjct: 75  NQLAAATQMSDQLRKQLAESDGVVRRLSRIASAARPITAPEAASEPAPAPVPAIT-AEPV 133

Query: 114 APAPRVSAAHAVAAAAEAFTERRRAGGLAA 143
               RVS+A AVAAAA+AF+ERRR GGLAA
Sbjct: 134 ----RVSSAKAVAAAAQAFSERRRTGGLAA 159


>ref|YP_317739.1| hypothetical protein Nwi_1125 [Nitrobacter winogradskyi Nb-255]
 gb|ABA04387.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255]
          Length = 144

 Score =  176 bits (445), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 95/145 (65%), Positives = 109/145 (75%), Gaps = 17/145 (11%)

Query: 1   VLLMLTIGYCWLLNKRLQRLKADEHSLKATIAELITATEIAERAIGGLKHAVRDVNENLG 60
           VLL+LTIGYC LLNKRL+RL++DE SLKATI+ELITATEIAERAIGGLKH VRDVN+NLG
Sbjct: 15  VLLVLTIGYCMLLNKRLKRLRSDEQSLKATISELITATEIAERAIGGLKHTVRDVNDNLG 74

Query: 61  NQLDAATQMSALLKNQLAEGDHVVRRLSKIALAARPSEPAHAPAQAVAPAAPVAPAPR-- 118
           NQ+ +AT +S  L  QLAEGD ++RRLS+IALAARP               P AP P   
Sbjct: 75  NQIASATDLSRQLAKQLAEGDALMRRLSRIALAARP---------------PTAPEPEAV 119

Query: 119 VSAAHAVAAAAEAFTERRRAGGLAA 143
            S A +VA AA AF+ERRRA GLAA
Sbjct: 120 TSDARSVADAARAFSERRRANGLAA 144


>ref|NP_772464.1| hypothetical protein bll5824 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC51089.1| bll5824 [Bradyrhizobium japonicum USDA 110]
          Length = 148

 Score =  174 bits (441), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 106/144 (73%), Positives = 114/144 (79%), Gaps = 11/144 (7%)

Query: 1   VLLMLTIGYCWLLNKRLQRLKADEHSLKATIAELITATEIAERAIGGLKHAVRDVNENLG 60
           +LLMLTIGYC LLNKRL RLKADEHSLKA IAELITATEIAERAIGGLK AVRDVNENLG
Sbjct: 15  ILLMLTIGYCILLNKRLTRLKADEHSLKAVIAELITATEIAERAIGGLKLAVRDVNENLG 74

Query: 61  NQLDAATQMSALLKNQLAEGDHVVRRLSKIALAARPSEPAHAPAQAVAPAAPVA-PAPRV 119
           +QL AATQMS  L  QL E D+VVRRLSKIA+AARP          VA   PVA P  + 
Sbjct: 75  SQLAAATQMSDQLYKQLGEADNVVRRLSKIAIAARP----------VASPEPVAVPVAKP 124

Query: 120 SAAHAVAAAAEAFTERRRAGGLAA 143
           S+A AVAAAAEAF+ERRR+ GLAA
Sbjct: 125 SSAKAVAAAAEAFSERRRSNGLAA 148


>ref|YP_001206948.1| putative methyl-accepting chemotaxis protein [Bradyrhizobium sp.
           ORS 278]
 emb|CAL78731.1| conserved hypothetical protein; putative methyl-accepting
           chemotaxis protein [Bradyrhizobium sp. ORS 278]
          Length = 162

 Score =  169 bits (429), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 107/148 (72%), Positives = 115/148 (77%), Gaps = 5/148 (3%)

Query: 1   VLLMLTIGYCWLLNKRLQRLKADEHSLKATIAELITATEIAERAIGGLKHAVRDVNENLG 60
           VLL+LTIGYC LLN RL+RLKADEHSLKA IAELITATEIAERAIGGLK AVRDVN+NLG
Sbjct: 15  VLLVLTIGYCMLLNSRLKRLKADEHSLKAVIAELITATEIAERAIGGLKLAVRDVNDNLG 74

Query: 61  NQLDAATQMSALLKNQLAEGDHVVRRLSKIALAARP----SEPAHAPAQAVAPAAPVAPA 116
           NQL AATQMS  L+ QLAE D VVRRLS+IA AARP       A  P  A AP   +   
Sbjct: 75  NQLAAATQMSDQLRKQLAESDGVVRRLSRIASAARPITSPDAAAPEPVAAPAPVPAITTE 134

Query: 117 P-RVSAAHAVAAAAEAFTERRRAGGLAA 143
           P RVS A AVAAAA+AF+ERRR GGLAA
Sbjct: 135 PVRVSGAKAVAAAAQAFSERRRTGGLAA 162


>ref|YP_780471.1| hypothetical protein RPE_1541 [Rhodopseudomonas palustris BisA53]
 gb|ABJ05491.1| conserved hypothetical protein [Rhodopseudomonas palustris BisA53]
          Length = 144

 Score =  157 bits (397), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 94/142 (66%), Positives = 105/142 (73%), Gaps = 13/142 (9%)

Query: 2   LLMLTIGYCWLLNKRLQRLKADEHSLKATIAELITATEIAERAIGGLKHAVRDVNENLGN 61
           LL+LTIGYC LLNKRL+ LKADEHSLKATIAELITATEIAERAIGGLK  VRDVNENL N
Sbjct: 16  LLLLTIGYCMLLNKRLKCLKADEHSLKATIAELITATEIAERAIGGLKLTVRDVNENLRN 75

Query: 62  QLDAATQMSALLKNQLAEGDHVVRRLSKIALAARPSEPAHAPAQAVAPAAPVAPAPRVSA 121
           Q+ +AT++S  L  QL EGDHV+RRLSKI  A RP       AQ             +S 
Sbjct: 76  QISSATELSDQLGKQLTEGDHVMRRLSKIVSAGRPPVEESTMAQ-------------LSP 122

Query: 122 AHAVAAAAEAFTERRRAGGLAA 143
           A AVAAAA+AF+ERRRA G+AA
Sbjct: 123 ARAVAAAAQAFSERRRADGIAA 144