BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0182.0104.p (372 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_766794.1| two-component sensor histidine kinase [Bradyrhi... 541 e-152 ref|YP_001238131.1| putative photosynthetic apparatus regulatory... 512 e-143 ref|YP_001203838.1| two-component sensor histidine kinase photos... 510 e-142 ref|YP_567739.1| ATPase-like ATP-binding protein [Rhodopseudomon... 506 e-141 ref|YP_483859.1| periplasmic sensor signal transduction histidin... 505 e-141 >ref|NP_766794.1| two-component sensor histidine kinase [Bradyrhizobium japonicum USDA 110] dbj|BAC45419.1| two-component sensor histidine kinase [Bradyrhizobium japonicum USDA 110] Length = 474 Score = 541 bits (1394), Expect = e-152, Method: Compositional matrix adjust. Identities = 272/367 (74%), Positives = 308/367 (83%) Query: 5 SSRTWLRYRADINNRELLVALALDVAALTALLYLSGGATNPFTSLYLLQVTLGAVLLDAP 64 SS W+R+RA I++ ELLVAL LDVAALTA LYLSGGATNPFTSL+LLQVTLGAVLLDA Sbjct: 107 SSLVWVRHRAAISSNELLVALMLDVAALTAQLYLSGGATNPFTSLFLLQVTLGAVLLDAR 166 Query: 65 STWSLVALVCMNFAWLTSYYRPLELPLHGFADAFNLYIAGTFIGLVLDAVLLVVFMTRIN 124 STWSLVAL C +F WLT YRPL+LP + ++A++L +AG +G VL+AVLLVVF+TRIN Sbjct: 167 STWSLVALTCASFVWLTLAYRPLDLPPNPISEAYSLTVAGMLLGFVLNAVLLVVFVTRIN 226 Query: 125 RNLRDRDLRLAALRQHAAEQDHIVRIGLLASGAAHELGTPLASLSVILGDWRRMPALASD 184 RNLR+RD LAALRQHAAEQDHIVR+GLLASGAAHELGTPLASLSVIL DWRRMP LA+D Sbjct: 227 RNLRERDAHLAALRQHAAEQDHIVRMGLLASGAAHELGTPLASLSVILSDWRRMPDLAAD 286 Query: 185 PEMSQDLGEMEISVQRCKSIVTGILLSAGEARGEGSSPTTVAAFLTALVEEWRTTRPSAT 244 E+++DL EME S+QRCKSIVTGIL+SAGEARGEGSSPTTV AF+TALV+EWR R + T Sbjct: 287 QELAEDLAEMETSLQRCKSIVTGILVSAGEARGEGSSPTTVTAFVTALVDEWRNARSART 346 Query: 245 LYFRNAFGSDLAIVSDIALKQAIFNVLDNAAEVSRDWIELTAERNADRLVLSVTDRGPGF 304 LYF N FG D+AI SD+ALKQ IFNVLDNA EVSRDW+EL AER D LVLS++DRGPGF Sbjct: 347 LYFVNTFGEDVAIASDVALKQVIFNVLDNAYEVSRDWVELLAEREGDNLVLSISDRGPGF 406 Query: 305 SREMLAHIGKPYQSTKGSPGSGLGLFLVVNVVRKLGGVVAARNRPDIGAAVRLELPLSTL 364 + EMLA +GKPY S+KG G GLGLFLVVNVVRKLGG V A N GA VRL LPL+TL Sbjct: 407 APEMLAQLGKPYHSSKGRAGGGLGLFLVVNVVRKLGGSVTAENHRKRGATVRLTLPLATL 466 Query: 365 AIGDHLD 371 AIG D Sbjct: 467 AIGGSFD 473 >ref|YP_001238131.1| putative photosynthetic apparatus regulatory protein regB [Bradyrhizobium sp. BTAi1] gb|ABQ34225.1| Putative Photosynthetic apparatus regulatory protein regB [Bradyrhizobium sp. BTAi1] Length = 450 Score = 512 bits (1319), Expect = e-143, Method: Compositional matrix adjust. Identities = 253/364 (69%), Positives = 300/364 (82%) Query: 5 SSRTWLRYRADINNRELLVALALDVAALTALLYLSGGATNPFTSLYLLQVTLGAVLLDAP 64 +S WLR R D+ NR+LL+AL LDV ALT+ LYL+GGA+NPFT LYLLQVTLGAVLLDA Sbjct: 83 ASHVWLRTRDDVGNRDLLIALMLDVVALTSELYLTGGASNPFTCLYLLQVTLGAVLLDAR 142 Query: 65 STWSLVALVCMNFAWLTSYYRPLELPLHGFADAFNLYIAGTFIGLVLDAVLLVVFMTRIN 124 S+WSLVAL ++F WLT YRPLELP +D F+L++ G F+G VLDAVLLVVF+TRIN Sbjct: 143 SSWSLVALTVLSFIWLTIEYRPLELPHRHVSDPFSLHVTGMFVGFVLDAVLLVVFVTRIN 202 Query: 125 RNLRDRDLRLAALRQHAAEQDHIVRIGLLASGAAHELGTPLASLSVILGDWRRMPALASD 184 RNLR+RD +LA LRQHAAEQDHI+R+GLLASGAAHELGTPLAS+SVIL DWRRM A+++D Sbjct: 203 RNLRERDAKLADLRQHAAEQDHIIRMGLLASGAAHELGTPLASISVILNDWRRMTAISAD 262 Query: 185 PEMSQDLGEMEISVQRCKSIVTGILLSAGEARGEGSSPTTVAAFLTALVEEWRTTRPSAT 244 P +++D EME +VQRCKSIVT IL+SAG+ARGEGS+PTT+ AFL+ LV EW R + Sbjct: 263 PALAEDFTEMEAAVQRCKSIVTDILVSAGQARGEGSAPTTLKAFLSNLVAEWSAARSARN 322 Query: 245 LYFRNAFGSDLAIVSDIALKQAIFNVLDNAAEVSRDWIELTAERNADRLVLSVTDRGPGF 304 L FRN FGSD AIVSD+ALKQAI NVLDNA EVSR+W+E AER+ D+L+LSV+DRGPGF Sbjct: 323 LMFRNEFGSDPAIVSDVALKQAIVNVLDNAFEVSREWVEFVAERDGDQLLLSVSDRGPGF 382 Query: 305 SREMLAHIGKPYQSTKGSPGSGLGLFLVVNVVRKLGGVVAARNRPDIGAAVRLELPLSTL 364 MLA +G+PYQS+KG PG GLGLFLVVNV+RKLGG V+A N GA VRL LPLS L Sbjct: 383 DPAMLAQLGRPYQSSKGRPGRGLGLFLVVNVIRKLGGGVSAWNHRGRGATVRLSLPLSML 442 Query: 365 AIGD 368 AIG+ Sbjct: 443 AIGE 446 >ref|YP_001203838.1| two-component sensor histidine kinase photosynthetic apparatus regulatory protein regB (PrrB protein) [Bradyrhizobium sp. ORS 278] emb|CAL75601.1| Two-component sensor histidine kinase; Putative Photosynthetic apparatus regulatory protein regB (PrrB protein) [Bradyrhizobium sp. ORS 278] Length = 464 Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust. Identities = 252/364 (69%), Positives = 297/364 (81%) Query: 5 SSRTWLRYRADINNRELLVALALDVAALTALLYLSGGATNPFTSLYLLQVTLGAVLLDAP 64 +S WLR R D+ NR+LL+AL LDV ALT+ LYL+GGA+NPFT LYLLQVTLGAVLLDA Sbjct: 97 ASHIWLRTRDDVGNRDLLIALMLDVVALTSELYLTGGASNPFTCLYLLQVTLGAVLLDAR 156 Query: 65 STWSLVALVCMNFAWLTSYYRPLELPLHGFADAFNLYIAGTFIGLVLDAVLLVVFMTRIN 124 S+WSLVAL ++F WLT YRPL LP H +D F+L+I G F+G VLDAVLLVVF+TRIN Sbjct: 157 SSWSLVALTVLSFVWLTIEYRPLALPQHHVSDPFSLHITGMFVGFVLDAVLLVVFVTRIN 216 Query: 125 RNLRDRDLRLAALRQHAAEQDHIVRIGLLASGAAHELGTPLASLSVILGDWRRMPALASD 184 RNLR+RD +LA LRQHAAEQDHI+R+GLLASGAAHELGTPLAS+SVIL DWRRM A+++D Sbjct: 217 RNLRERDAKLADLRQHAAEQDHIIRMGLLASGAAHELGTPLASISVILNDWRRMTAISAD 276 Query: 185 PEMSQDLGEMEISVQRCKSIVTGILLSAGEARGEGSSPTTVAAFLTALVEEWRTTRPSAT 244 P +++D EME +VQRCKSIVT IL+SAG+ARGEGS+PTT+ FL LV EW R + Sbjct: 277 PALAEDFTEMEAAVQRCKSIVTDILVSAGQARGEGSAPTTLKTFLATLVSEWTAARSARN 336 Query: 245 LYFRNAFGSDLAIVSDIALKQAIFNVLDNAAEVSRDWIELTAERNADRLVLSVTDRGPGF 304 L RN FGSD IVSD+ALKQAI NVLDNA EVSR+W+EL AER+ D+L+LSV+DRGPGF Sbjct: 337 LMVRNEFGSDPTIVSDVALKQAIVNVLDNAFEVSREWVELVAERDGDQLLLSVSDRGPGF 396 Query: 305 SREMLAHIGKPYQSTKGSPGSGLGLFLVVNVVRKLGGVVAARNRPDIGAAVRLELPLSTL 364 MLA +G+PYQS+KG PG GLGLFLVVNV+RKLGG V+A N GA VRL LPLS L Sbjct: 397 DPAMLAQLGRPYQSSKGRPGRGLGLFLVVNVIRKLGGGVSAWNHRGRGATVRLSLPLSML 456 Query: 365 AIGD 368 AIG+ Sbjct: 457 AIGE 460 >ref|YP_567739.1| ATPase-like ATP-binding protein [Rhodopseudomonas palustris BisB5] gb|ABE37838.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5] Length = 449 Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust. Identities = 257/366 (70%), Positives = 294/366 (80%), Gaps = 1/366 (0%) Query: 6 SRTWLRYRADINNRELLVALALDVAALTALLYLSGGATNPFTSLYLLQVTLGAVLLDAPS 65 S W+RYR ++NR+LL+AL LDV ALTA LYLSGG TNPFTSLYLLQVTLGAVLLD+ + Sbjct: 85 SLAWMRYRVAVSNRDLLIALILDVVALTAQLYLSGGITNPFTSLYLLQVTLGAVLLDSRA 144 Query: 66 TWSLVALVCMNFAWLTSYYRPLELPLHGFADAFNLYIAGTFIGLVLDAVLLVVFMTRINR 125 +WSLVA+V F WLT RPL LP D NL +AG IG L+AVLLVVF+TRI+R Sbjct: 145 SWSLVAVVFAAFIWLTGASRPLVLP-QTAGDPVNLTVAGMLIGFALNAVLLVVFVTRIHR 203 Query: 126 NLRDRDLRLAALRQHAAEQDHIVRIGLLASGAAHELGTPLASLSVILGDWRRMPALASDP 185 NLR+RD LAALRQHAAEQDHIVR+GLLASGAAHELGTPLAS+SVIL DWRRMPAL + Sbjct: 204 NLRERDAHLAALRQHAAEQDHIVRMGLLASGAAHELGTPLASVSVILSDWRRMPALTENR 263 Query: 186 EMSQDLGEMEISVQRCKSIVTGILLSAGEARGEGSSPTTVAAFLTALVEEWRTTRPSATL 245 E+++DL EME S++RC+SIVTGIL+SAGEARGEGSSPTTVA FL+A+ EEWR R TL Sbjct: 264 ELAEDLTEMETSLKRCQSIVTGILVSAGEARGEGSSPTTVAEFLSAIAEEWRNARCKTTL 323 Query: 246 YFRNAFGSDLAIVSDIALKQAIFNVLDNAAEVSRDWIELTAERNADRLVLSVTDRGPGFS 305 + N FG DL IVSD+ LKQAIFNVLDNA EVSR WIEL AER+ D LVLS+ DRGPGFS Sbjct: 324 HVVNVFGEDLPIVSDVTLKQAIFNVLDNAFEVSRHWIELVAERDGDDLVLSIIDRGPGFS 383 Query: 306 REMLAHIGKPYQSTKGSPGSGLGLFLVVNVVRKLGGVVAARNRPDIGAAVRLELPLSTLA 365 ++ML IGKPYQS+KG G GLGLFLV+NVVRKLGG + A N + GA V+L LPL TLA Sbjct: 384 KDMLTQIGKPYQSSKGRVGGGLGLFLVMNVVRKLGGSMTAENLHNRGAKVKLVLPLKTLA 443 Query: 366 IGDHLD 371 IGD D Sbjct: 444 IGDDFD 449 >ref|YP_483859.1| periplasmic sensor signal transduction histidine kinase [Rhodopseudomonas palustris HaA2] gb|ABD04948.1| periplasmic sensor signal transduction histidine kinase [Rhodopseudomonas palustris HaA2] Length = 437 Score = 505 bits (1300), Expect = e-141, Method: Compositional matrix adjust. Identities = 256/367 (69%), Positives = 297/367 (80%), Gaps = 1/367 (0%) Query: 5 SSRTWLRYRADINNRELLVALALDVAALTALLYLSGGATNPFTSLYLLQVTLGAVLLDAP 64 +S W+RYR I+NR+LLVAL LDV ALTALLYLSGG TNPFTSLYLLQVTLGAVLLD+ Sbjct: 72 ASLAWMRYRVAISNRDLLVALILDVVALTALLYLSGGITNPFTSLYLLQVTLGAVLLDSR 131 Query: 65 STWSLVALVCMNFAWLTSYYRPLELPLHGFADAFNLYIAGTFIGLVLDAVLLVVFMTRIN 124 S+WSLVA+V F WLT RPL LP D NL +AG IG L+AVLLVVF+TRI+ Sbjct: 132 SSWSLVAVVFTAFIWLTEASRPLVLP-PAAGDPVNLAVAGMLIGFALNAVLLVVFVTRIH 190 Query: 125 RNLRDRDLRLAALRQHAAEQDHIVRIGLLASGAAHELGTPLASLSVILGDWRRMPALASD 184 RNLR+RD LAALRQHAAEQDHIVR+GLLASGAAHELGTPLAS+SVIL DWRRMP + ++ Sbjct: 191 RNLRERDAHLAALRQHAAEQDHIVRMGLLASGAAHELGTPLASVSVILSDWRRMPQIMAN 250 Query: 185 PEMSQDLGEMEISVQRCKSIVTGILLSAGEARGEGSSPTTVAAFLTALVEEWRTTRPSAT 244 E+++DL EME +++RC+SIVTGIL+SAGEARGEGSSPTTV+AFL+AL EEW+ R T Sbjct: 251 REIAEDLAEMETALKRCQSIVTGILVSAGEARGEGSSPTTVSAFLSALAEEWQNARCKTT 310 Query: 245 LYFRNAFGSDLAIVSDIALKQAIFNVLDNAAEVSRDWIELTAERNADRLVLSVTDRGPGF 304 L+ N FG D+ IVSD+ LKQAIFNVLDNA EVSR WIEL AER+ D LVLS++DRGPGF Sbjct: 311 LHVVNVFGEDVPIVSDVTLKQAIFNVLDNAFEVSRYWIELVAERDGDNLVLSISDRGPGF 370 Query: 305 SREMLAHIGKPYQSTKGSPGSGLGLFLVVNVVRKLGGVVAARNRPDIGAAVRLELPLSTL 364 ++ML IGKPYQS+KG G GLGLFLV+NVVRKLGG + A N GA V+L LPLSTL Sbjct: 371 PKDMLTQIGKPYQSSKGRAGGGLGLFLVMNVVRKLGGSITAENLRTRGAKVKLVLPLSTL 430 Query: 365 AIGDHLD 371 AIG+ D Sbjct: 431 AIGNPFD 437