BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0182.0103.p         (146 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_766795.1| two-component response regulator [Bradyrhizobiu...   246   7e-64
ref|YP_483858.1| two component Fis family transcriptional regula...   245   2e-63
ref|YP_001238132.1| putative photosynthetic apparatus regulatory...   244   3e-63
ref|YP_001020933.1| two-component response regulator [Methylibiu...   244   3e-63
ref|YP_001203839.1| two-component response regulator photosynthe...   240   4e-62

>ref|NP_766795.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 dbj|BAC45420.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 177

 Score =  246 bits (629), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 122/146 (83%), Positives = 134/146 (91%), Gaps = 1/146 (0%)

Query: 1   VSASLDEVRQLLEQQSPGYAVVDLKLAGGASGLACVEALHAHDPEMLIVVLTGFASIATA 60
           ++ S++EVR++LE++S G+AVVDLKL GGASGLACVE LH HD EMLIVVLTGFASI+TA
Sbjct: 33  LAGSIEEVRKVLEERSFGHAVVDLKL-GGASGLACVELLHTHDEEMLIVVLTGFASISTA 91

Query: 61  VEAIKLGACHYLAKPSNTDDIEAAFQKAAGNAAIELGARPTSIKTLEWERIHQTLIETDF 120
           VEAIKLGACHYLAKPSNTDDIEAAF KA GNA + L ARPTSIKTLEWERIHQTLIETDF
Sbjct: 92  VEAIKLGACHYLAKPSNTDDIEAAFNKAEGNAEVALDARPTSIKTLEWERIHQTLIETDF 151

Query: 121 NISEAARRLGMHRRTLARKLEKQRVK 146
           NISEAARRLGMHRRTLARKLEK+ VK
Sbjct: 152 NISEAARRLGMHRRTLARKLEKRPVK 177


>ref|YP_483858.1| two component Fis family transcriptional regulator
           [Rhodopseudomonas palustris HaA2]
 gb|ABD04947.1| two component transcriptional regulator, Fis family
           [Rhodopseudomonas palustris HaA2]
          Length = 177

 Score =  245 bits (626), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 120/145 (82%), Positives = 135/145 (93%), Gaps = 1/145 (0%)

Query: 2   SASLDEVRQLLEQQSPGYAVVDLKLAGGASGLACVEALHAHDPEMLIVVLTGFASIATAV 61
           ++++DEVR  L+++S GYAVVDLKL GGASGLACVE LHA DPEMLIVVLTGFASIATAV
Sbjct: 34  ASTIDEVRDALDERSFGYAVVDLKL-GGASGLACVELLHAQDPEMLIVVLTGFASIATAV 92

Query: 62  EAIKLGACHYLAKPSNTDDIEAAFQKAAGNAAIELGARPTSIKTLEWERIHQTLIETDFN 121
           EAIKLGACHYLAKPSNTDDIEAAF+KA GNA I L ++PTSIKTLEWERIHQTLIE++FN
Sbjct: 93  EAIKLGACHYLAKPSNTDDIEAAFRKAEGNADIALASQPTSIKTLEWERIHQTLIESEFN 152

Query: 122 ISEAARRLGMHRRTLARKLEKQRVK 146
           ISEAARRLGMHRRTLARKLEK++V+
Sbjct: 153 ISEAARRLGMHRRTLARKLEKRQVR 177


>ref|YP_001238132.1| putative photosynthetic apparatus regulatory protein regA
           [Bradyrhizobium sp. BTAi1]
 gb|ABQ34226.1| Putative Photosynthetic apparatus regulatory protein regA
           [Bradyrhizobium sp. BTAi1]
          Length = 177

 Score =  244 bits (623), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 123/146 (84%), Positives = 132/146 (90%), Gaps = 1/146 (0%)

Query: 1   VSASLDEVRQLLEQQSPGYAVVDLKLAGGASGLACVEALHAHDPEMLIVVLTGFASIATA 60
           V+ASL+EV + L++++ GYAVVDLKL GGASGL CVE LHAHDPEMLIVVLTGFASIATA
Sbjct: 33  VAASLEEVDEALKEKTFGYAVVDLKL-GGASGLVCVEKLHAHDPEMLIVVLTGFASIATA 91

Query: 61  VEAIKLGACHYLAKPSNTDDIEAAFQKAAGNAAIELGARPTSIKTLEWERIHQTLIETDF 120
           VEAIKLGACHYLAKPSNTDDIE AF+KA GNA I L  R TSIKTLEWERIHQTLIETDF
Sbjct: 92  VEAIKLGACHYLAKPSNTDDIEEAFRKAEGNAQIALPERSTSIKTLEWERIHQTLIETDF 151

Query: 121 NISEAARRLGMHRRTLARKLEKQRVK 146
           NISEAARRLGMHRRTLARKLEK+ VK
Sbjct: 152 NISEAARRLGMHRRTLARKLEKRPVK 177


>ref|YP_001020933.1| two-component response regulator [Methylibium petroleiphilum PM1]
 gb|ABM94698.1| two-component response regulator [Methylibium petroleiphilum PM1]
          Length = 178

 Score =  244 bits (623), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 117/146 (80%), Positives = 131/146 (89%)

Query: 1   VSASLDEVRQLLEQQSPGYAVVDLKLAGGASGLACVEALHAHDPEMLIVVLTGFASIATA 60
           ++A+L++V  LL +++PGYAVVDLKLAGG SGLACV  LHAHDPEMLIVVLTG+ASIATA
Sbjct: 33  LAANLEQVAALLRERTPGYAVVDLKLAGGGSGLACVRTLHAHDPEMLIVVLTGYASIATA 92

Query: 61  VEAIKLGACHYLAKPSNTDDIEAAFQKAAGNAAIELGARPTSIKTLEWERIHQTLIETDF 120
           VEAIKLGACHYLAKPSNTDDIEAAF +A GNA ++L  R +SIKTLEWERIH+TL ET F
Sbjct: 93  VEAIKLGACHYLAKPSNTDDIEAAFGRAEGNAEVDLTQRASSIKTLEWERIHETLAETGF 152

Query: 121 NISEAARRLGMHRRTLARKLEKQRVK 146
           NISE ARRLGMHRRTLARKLEKQRVK
Sbjct: 153 NISETARRLGMHRRTLARKLEKQRVK 178


>ref|YP_001203839.1| two-component response regulator photosynthetic apparatus
           regulatory protein regA [Bradyrhizobium sp. ORS 278]
 emb|CAL75602.1| Two-component response regulator; Putative Photosynthetic apparatus
           regulatory protein regA [Bradyrhizobium sp. ORS 278]
          Length = 177

 Score =  240 bits (613), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 118/146 (80%), Positives = 132/146 (90%), Gaps = 1/146 (0%)

Query: 1   VSASLDEVRQLLEQQSPGYAVVDLKLAGGASGLACVEALHAHDPEMLIVVLTGFASIATA 60
           ++ASL++V ++++ ++ GYAVVDLKL GGASGL CVE LHAHDPEMLIVVLTGFASIATA
Sbjct: 33  IAASLEDVDEIIKDKTFGYAVVDLKL-GGASGLVCVEKLHAHDPEMLIVVLTGFASIATA 91

Query: 61  VEAIKLGACHYLAKPSNTDDIEAAFQKAAGNAAIELGARPTSIKTLEWERIHQTLIETDF 120
           VEAIKLGACHYLAKPSNTDDIE AF+KA GNA + L  R TSIKTLEWERIHQTLI+TDF
Sbjct: 92  VEAIKLGACHYLAKPSNTDDIEEAFRKAEGNAQVALPERSTSIKTLEWERIHQTLIDTDF 151

Query: 121 NISEAARRLGMHRRTLARKLEKQRVK 146
           NISEAARRLGMHRRTLARKLEK+ VK
Sbjct: 152 NISEAARRLGMHRRTLARKLEKRPVK 177