BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0182.0098.p (278 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_768676.1| oxidoreductase [Bradyrhizobium japonicum USDA 1... 484 e-135 ref|YP_534318.1| short-chain dehydrogenase/reductase SDR [Rhodop... 419 e-115 ref|YP_783444.1| short-chain dehydrogenase/reductase SDR [Rhodop... 415 e-114 ref|YP_004111089.1| short-chain dehydrogenase/reductase SDR [Rho... 403 e-110 ref|YP_001241781.1| FixR protein [Bradyrhizobium sp. BTAi1] >gi|... 402 e-110 >ref|NP_768676.1| oxidoreductase [Bradyrhizobium japonicum USDA 110] sp|P05406.2|FIXR_BRAJA RecName: Full=Protein fixR gb|AAG61007.1|AF322013_126 FixR [Bradyrhizobium japonicum] emb|CAA29530.1| unnamed protein product [Bradyrhizobium japonicum] dbj|BAC47301.1| oxidoreductase [Bradyrhizobium japonicum USDA 110] Length = 278 Score = 484 bits (1245), Expect = e-135, Method: Compositional matrix adjust. Identities = 236/278 (84%), Positives = 256/278 (92%) Query: 1 VGLDLPNDDLIAGPLPETHLGCPFRADEARLHQGEQKAMLLTGASRGIGHATAKLFSEAG 60 +GLDLPND+LI GPLPE HL A AR+ +GE K MLLTGASRGIGHATAKLFSEAG Sbjct: 1 MGLDLPNDNLIRGPLPEAHLDRLVDAVNARVDRGEPKVMLLTGASRGIGHATAKLFSEAG 60 Query: 61 WRIISCARQPFDGARCPWDSGREDHVQVDLSDYQMLPRLIAQVKERLAGAPLHALVNNAG 120 WRIISCARQPFDG RCPW++G +DH QVDL D++MLPR I +VK+RLAGAPLHALVNNAG Sbjct: 61 WRIISCARQPFDGERCPWEAGNDDHFQVDLGDHRMLPRAITEVKKRLAGAPLHALVNNAG 120 Query: 121 ISPKTSDGDRLTSLTTSTETWMRVFHLNLVAPILLARGLFDELRAASGSIVNVTSIAGSR 180 +SPKT GDR+TSLTTST+TWMRVFHLNLVAPILLA+GLFDELRAASGSIVNVTSIAGSR Sbjct: 121 VSPKTPTGDRMTSLTTSTDTWMRVFHLNLVAPILLAQGLFDELRAASGSIVNVTSIAGSR 180 Query: 181 VHPFAGSAYATSKAALASLTREMAHDYAPYGVRVNAIAPGEIRTDMLSPDTEARLVPNIP 240 VHPFAGSAYATSKAALASLTRE+AHDYAP+G+RVNAIAPGEIRTDMLSPD EAR+V +IP Sbjct: 181 VHPFAGSAYATSKAALASLTRELAHDYAPHGIRVNAIAPGEIRTDMLSPDAEARVVASIP 240 Query: 241 LRRVGTPDEVAKVIFFLCSDAASYVTGAEVPINGGQHL 278 LRRVGTPDEVAKVIFFLCSDAASYVTGAEVPINGGQHL Sbjct: 241 LRRVGTPDEVAKVIFFLCSDAASYVTGAEVPINGGQHL 278 >ref|YP_534318.1| short-chain dehydrogenase/reductase SDR [Rhodopseudomonas palustris BisB18] gb|ABD89999.1| short-chain dehydrogenase/reductase SDR [Rhodopseudomonas palustris BisB18] Length = 306 Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust. Identities = 195/257 (75%), Positives = 225/257 (87%) Query: 22 CPFRADEARLHQGEQKAMLLTGASRGIGHATAKLFSEAGWRIISCARQPFDGARCPWDSG 81 CPF D+ G+QK ++LTGASRGIGHAT KLFSEAGWRI++C+RQPF+ RCPW +G Sbjct: 50 CPFHNDQRDSRSGKQKTLVLTGASRGIGHATGKLFSEAGWRIVTCSRQPFNDERCPWATG 109 Query: 82 REDHVQVDLSDYQMLPRLIAQVKERLAGAPLHALVNNAGISPKTSDGDRLTSLTTSTETW 141 EDHV+++L DY+ LPR IA +KERL GAPLHAL+NNA ISPK +G+RLTSL T ETW Sbjct: 110 VEDHVEIELGDYRALPRAIAALKERLGGAPLHALINNAAISPKGLEGERLTSLNTPVETW 169 Query: 142 MRVFHLNLVAPILLARGLFDELRAASGSIVNVTSIAGSRVHPFAGSAYATSKAALASLTR 201 M VFH+NL+APILLA+GLFDELRA SGSIVNVTSI GSRVHPFAG+AYATSKAALA LTR Sbjct: 170 MGVFHVNLLAPILLAQGLFDELRAGSGSIVNVTSIVGSRVHPFAGTAYATSKAALACLTR 229 Query: 202 EMAHDYAPYGVRVNAIAPGEIRTDMLSPDTEARLVPNIPLRRVGTPDEVAKVIFFLCSDA 261 EMAHDYAPYG+RVNAIAPGEI+TD+LSP+TEARL P IP+RR+GTPDEVAKV+FFLCSDA Sbjct: 230 EMAHDYAPYGIRVNAIAPGEIKTDILSPETEARLAPTIPMRRIGTPDEVAKVMFFLCSDA 289 Query: 262 ASYVTGAEVPINGGQHL 278 ASYVTG E+ INGGQH+ Sbjct: 290 ASYVTGEEIHINGGQHV 306 >ref|YP_783444.1| short-chain dehydrogenase/reductase SDR [Rhodopseudomonas palustris BisA53] gb|ABJ08464.1| short-chain dehydrogenase/reductase SDR [Rhodopseudomonas palustris BisA53] Length = 306 Score = 415 bits (1067), Expect = e-114, Method: Compositional matrix adjust. Identities = 194/266 (72%), Positives = 224/266 (84%) Query: 13 GPLPETHLGCPFRADEARLHQGEQKAMLLTGASRGIGHATAKLFSEAGWRIISCARQPFD 72 G +P CPF D+ G QK ++LTGASRGIGHAT KLFS+AGWRI++C+RQPF Sbjct: 41 GEMPPAGGACPFHNDQRESRSGRQKTLVLTGASRGIGHATGKLFSDAGWRIVTCSRQPFQ 100 Query: 73 GARCPWDSGREDHVQVDLSDYQMLPRLIAQVKERLAGAPLHALVNNAGISPKTSDGDRLT 132 RCPW G EDHV+++L DY+ LPR I+ +KERL GAPLHAL+NNA ISPK DGDRLT Sbjct: 101 DDRCPWSGGSEDHVEIELGDYRALPRAISALKERLGGAPLHALINNAAISPKGMDGDRLT 160 Query: 133 SLTTSTETWMRVFHLNLVAPILLARGLFDELRAASGSIVNVTSIAGSRVHPFAGSAYATS 192 SL T +TWM VFH+NL+API+LA+GLFDELRA SGSI+NVTSI GSRVHPFAGSAYATS Sbjct: 161 SLNTPPDTWMSVFHVNLLAPIMLAQGLFDELRAGSGSIINVTSIVGSRVHPFAGSAYATS 220 Query: 193 KAALASLTREMAHDYAPYGVRVNAIAPGEIRTDMLSPDTEARLVPNIPLRRVGTPDEVAK 252 KAALA LTREMAHDYAPYG+RVNAIAPGEI+TD+LSP+TEA L P IP+RR+GTPDEVAK Sbjct: 221 KAALACLTREMAHDYAPYGIRVNAIAPGEIKTDILSPETEALLAPTIPMRRIGTPDEVAK 280 Query: 253 VIFFLCSDAASYVTGAEVPINGGQHL 278 V+FFLCSDAASYVTG E+ INGGQH+ Sbjct: 281 VMFFLCSDAASYVTGEEIHINGGQHV 306 >ref|YP_004111089.1| short-chain dehydrogenase/reductase SDR [Rhodopseudomonas palustris DX-1] gb|ADU46356.1| short-chain dehydrogenase/reductase SDR [Rhodopseudomonas palustris DX-1] Length = 269 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 185/257 (71%), Positives = 222/257 (86%) Query: 22 CPFRADEARLHQGEQKAMLLTGASRGIGHATAKLFSEAGWRIISCARQPFDGARCPWDSG 81 CPF D+ G+QK ++LTGASRGIGHAT KLFS+AGWRII+C+RQPF RCPW +G Sbjct: 13 CPFHNDQREARTGKQKTLVLTGASRGIGHATGKLFSDAGWRIITCSRQPFADDRCPWATG 72 Query: 82 REDHVQVDLSDYQMLPRLIAQVKERLAGAPLHALVNNAGISPKTSDGDRLTSLTTSTETW 141 E+HV V+L+D++ +PR I ++KE+LAG PLHAL+NNA ISPK+++G+RLTSL T TW Sbjct: 73 LENHVAVELADHRAVPRAIDELKEKLAGGPLHALINNAAISPKSAEGERLTSLNTPVGTW 132 Query: 142 MRVFHLNLVAPILLARGLFDELRAASGSIVNVTSIAGSRVHPFAGSAYATSKAALASLTR 201 M VFH+NL+AP++LA+GLFDELRA GSIVNVTSI GSRVHPFAGSAYATSKAAL LTR Sbjct: 133 MSVFHVNLLAPVMLAQGLFDELRAGQGSIVNVTSIVGSRVHPFAGSAYATSKAALTCLTR 192 Query: 202 EMAHDYAPYGVRVNAIAPGEIRTDMLSPDTEARLVPNIPLRRVGTPDEVAKVIFFLCSDA 261 EMAHDYAPYG+RVNAIAPGEI+TD+LSP+TEA L P IP+RR+GTP+EVAKV+FFLCSDA Sbjct: 193 EMAHDYAPYGIRVNAIAPGEIKTDILSPETEAMLAPTIPMRRIGTPEEVAKVMFFLCSDA 252 Query: 262 ASYVTGAEVPINGGQHL 278 ASYVTG E+ INGGQH+ Sbjct: 253 ASYVTGEEIHINGGQHV 269 >ref|YP_001241781.1| FixR protein [Bradyrhizobium sp. BTAi1] gb|ABQ37875.1| FixR protein [Bradyrhizobium sp. BTAi1] Length = 282 Score = 402 bits (1033), Expect = e-110, Method: Compositional matrix adjust. Identities = 189/270 (70%), Positives = 225/270 (83%), Gaps = 3/270 (1%) Query: 12 AGPLPETHLGCPFRADEA---RLHQGEQKAMLLTGASRGIGHATAKLFSEAGWRIISCAR 68 AG T CPF D A R + EQK ++LTG SRGIGHATAKLFS+AGWRI++C+R Sbjct: 13 AGEAVATVASCPFHQDVAAAERPGRTEQKTLVLTGGSRGIGHATAKLFSDAGWRILTCSR 72 Query: 69 QPFDGARCPWDSGREDHVQVDLSDYQMLPRLIAQVKERLAGAPLHALVNNAGISPKTSDG 128 QPFDG RCPWD+G +HVQVDLSD Q +PR IA++K +L GAPLHAL+NNA ISPK +DG Sbjct: 73 QPFDGGRCPWDAGAANHVQVDLSDRQAIPRAIAEIKAKLDGAPLHALINNAAISPKATDG 132 Query: 129 DRLTSLTTSTETWMRVFHLNLVAPILLARGLFDELRAASGSIVNVTSIAGSRVHPFAGSA 188 RL SL+TS ETWM VFH+N + PILLARGLF+EL+ G++VNVTSI G+RVHPFAG+A Sbjct: 133 GRLDSLSTSVETWMTVFHVNFLGPILLARGLFEELKRGQGAVVNVTSIVGTRVHPFAGTA 192 Query: 189 YATSKAALASLTREMAHDYAPYGVRVNAIAPGEIRTDMLSPDTEARLVPNIPLRRVGTPD 248 YATSKAALA LTREMAHD+AP+G+RVNAIAPGEI+T+M+SP+TEAR P IP+RR+G P+ Sbjct: 193 YATSKAALACLTREMAHDFAPHGIRVNAIAPGEIKTEMVSPETEARFSPLIPMRRIGAPE 252 Query: 249 EVAKVIFFLCSDAASYVTGAEVPINGGQHL 278 EVAKV+FFLCSDAASYVTG E+ INGGQHL Sbjct: 253 EVAKVLFFLCSDAASYVTGEEIQINGGQHL 282