BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0182.0097.p (584 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp|P05407.4|NIFA_BRAJA RecName: Full=Nif-specific regulatory pro... 920 0.0 ref|NP_768677.1| nif-specific regulatory protein [Bradyrhizobium... 920 0.0 emb|CAA29532.1| unnamed protein product [Bradyrhizobium japonicu... 917 0.0 emb|CAA29531.1| unnamed protein product [Bradyrhizobium japonicum] 917 0.0 ref|NP_106431.1| NIFA, nif-specific regulatory protein [Mesorhiz... 845 0.0 >sp|P05407.4|NIFA_BRAJA RecName: Full=Nif-specific regulatory protein Length = 582 Score = 920 bits (2378), Expect = 0.0, Method: Compositional matrix adjust. Identities = 463/584 (79%), Positives = 510/584 (87%), Gaps = 2/584 (0%) Query: 1 MLHIASAREIPASHPETERELSGEPLRESALTGIFEISKILTAPCRLEVTLANVVGLLQS 60 MLHI S+ E PAS PE ER GEP ESAL GI+EISKIL AP RLEVTLANV+GLLQS Sbjct: 1 MLHIPSSSERPASQPEPERAPPGEPSHESALAGIYEISKILNAPGRLEVTLANVLGLLQS 60 Query: 61 FVQMRHGIVSLFDDDGMPDITVGAGWSEGSDDRFRMRLPRKAIDQIVATDRPLVAENVAA 120 FVQMRHG+VSLF+DDG+P++TVGAGWSEG+D+R+R +P+KAI +IVAT R L+ ENVAA Sbjct: 61 FVQMRHGLVSLFNDDGVPELTVGAGWSEGTDERYRTCVPQKAIHEIVATGRSLMVENVAA 120 Query: 121 EPAFSAADLEVLGASDNMPVSFIGVPIRIDPKVVGTLTLDRVCDERSSLRLDYDARLLTM 180 E AFSAAD EVLGASD++PV+FIGVPIR+D VVGTLT+DR+ + SSL L+YDARLL M Sbjct: 121 ETAFSAADREVLGASDSIPVAFIGVPIRVDSTVVGTLTIDRIPEGSSSL-LEYDARLLAM 179 Query: 181 IANLVGQTVRLHRLFACDRERLMVEKDRLQKQLFEFRQPVRERKKVPVHGIIGDSPALRG 240 +AN++GQT++LHRLFA DRE+ +V+KDRL+KQ + P RERK++ HGIIGDSPAL Sbjct: 180 VANVIGQTIKLHRLFAGDREQSLVDKDRLEKQTVDRGPPARERKQLQAHGIIGDSPALSA 239 Query: 241 LLEKIAVVAKSNSTVLLRGESGTGKELVAKAIHESSSRAKRPFIKLNCAALPETVLESEL 300 LLEKI VVA+SNSTVLLRGESGTGKELVAKAIHESS RAKRPF+KLNCAALPETVLESEL Sbjct: 240 LLEKIVVVARSNSTVLLRGESGTGKELVAKAIHESSVRAKRPFVKLNCAALPETVLESEL 299 Query: 301 FGHEKGAFTGAFSSRKGRFELADKGTLFLDEIGEISAPFQAKLLRVLQEQEFERVGSNQT 360 FGHEKGAFTGA S+RKGRFELADKGTLFLDEIGEIS PFQAKLLRVLQEQEFERVGSN T Sbjct: 300 FGHEKGAFTGAVSARKGRFELADKGTLFLDEIGEISPPFQAKLLRVLQEQEFERVGSNHT 359 Query: 361 IKVDVRVIAATNKNLEEAVARSEFRADLYYRISVVPLLLPPLRERRSDIPLLAGEFLRNF 420 IKVDVRVIAATN+NLEEAVARSEFRADLYYRISVVPLLLPPLRERRSDIPLLA EFLR F Sbjct: 360 IKVDVRVIAATNRNLEEAVARSEFRADLYYRISVVPLLLPPLRERRSDIPLLAREFLRKF 419 Query: 421 NSVNGRTLTLEASAIDVLMNCGFPGNVRELENCIERTATLSAGPSIVRNDFACCHGQCLS 480 NS NGR+LTLEASAIDVLM+C FPGNVRELENCIERTATLSAG SIVR+DFAC GQCLS Sbjct: 420 NSENGRSLTLEASAIDVLMSCKFPGNVRELENCIERTATLSAGTSIVRSDFACSQGQCLS 479 Query: 481 AMLWKSTSEEATVQTAPVVPVPAKPISLPSEATAPAPLVGSELASLAPPGTVLVSGAKMA 540 LWKSTS T AP+ PVPAK I +P TAP P E SLAP GTVLVSGA+MA Sbjct: 480 TTLWKSTSYGKTDPAAPMQPVPAKSI-IPLAETAPPPQAVCEPGSLAPSGTVLVSGARMA 538 Query: 541 DRERVIAAMEKSGWVQAKAARLLGLTPRQIGYALRKYGIEIKRF 584 DRERV+AAMEKSGWVQAKAARLLGLTPRQ+GYALRKYGIEIKRF Sbjct: 539 DRERVVAAMEKSGWVQAKAARLLGLTPRQVGYALRKYGIEIKRF 582 >ref|NP_768677.1| nif-specific regulatory protein [Bradyrhizobium japonicum USDA 110] gb|AAG61008.1|AF322013_127 NifA [Bradyrhizobium japonicum] dbj|BAC47302.1| nif-specific regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 605 Score = 920 bits (2378), Expect = 0.0, Method: Compositional matrix adjust. Identities = 463/584 (79%), Positives = 510/584 (87%), Gaps = 2/584 (0%) Query: 1 MLHIASAREIPASHPETERELSGEPLRESALTGIFEISKILTAPCRLEVTLANVVGLLQS 60 MLHI S+ E PAS PE ER GEP ESAL GI+EISKIL AP RLEVTLANV+GLLQS Sbjct: 24 MLHIPSSSERPASQPEPERAPPGEPSHESALAGIYEISKILNAPGRLEVTLANVLGLLQS 83 Query: 61 FVQMRHGIVSLFDDDGMPDITVGAGWSEGSDDRFRMRLPRKAIDQIVATDRPLVAENVAA 120 FVQMRHG+VSLF+DDG+P++TVGAGWSEG+D+R+R +P+KAI +IVAT R L+ ENVAA Sbjct: 84 FVQMRHGLVSLFNDDGVPELTVGAGWSEGTDERYRTCVPQKAIHEIVATGRSLMVENVAA 143 Query: 121 EPAFSAADLEVLGASDNMPVSFIGVPIRIDPKVVGTLTLDRVCDERSSLRLDYDARLLTM 180 E AFSAAD EVLGASD++PV+FIGVPIR+D VVGTLT+DR+ + SSL L+YDARLL M Sbjct: 144 ETAFSAADREVLGASDSIPVAFIGVPIRVDSTVVGTLTIDRIPEGSSSL-LEYDARLLAM 202 Query: 181 IANLVGQTVRLHRLFACDRERLMVEKDRLQKQLFEFRQPVRERKKVPVHGIIGDSPALRG 240 +AN++GQT++LHRLFA DRE+ +V+KDRL+KQ + P RERK++ HGIIGDSPAL Sbjct: 203 VANVIGQTIKLHRLFAGDREQSLVDKDRLEKQTVDRGPPARERKQLQAHGIIGDSPALSA 262 Query: 241 LLEKIAVVAKSNSTVLLRGESGTGKELVAKAIHESSSRAKRPFIKLNCAALPETVLESEL 300 LLEKI VVA+SNSTVLLRGESGTGKELVAKAIHESS RAKRPF+KLNCAALPETVLESEL Sbjct: 263 LLEKIVVVARSNSTVLLRGESGTGKELVAKAIHESSVRAKRPFVKLNCAALPETVLESEL 322 Query: 301 FGHEKGAFTGAFSSRKGRFELADKGTLFLDEIGEISAPFQAKLLRVLQEQEFERVGSNQT 360 FGHEKGAFTGA S+RKGRFELADKGTLFLDEIGEIS PFQAKLLRVLQEQEFERVGSN T Sbjct: 323 FGHEKGAFTGAVSARKGRFELADKGTLFLDEIGEISPPFQAKLLRVLQEQEFERVGSNHT 382 Query: 361 IKVDVRVIAATNKNLEEAVARSEFRADLYYRISVVPLLLPPLRERRSDIPLLAGEFLRNF 420 IKVDVRVIAATN+NLEEAVARSEFRADLYYRISVVPLLLPPLRERRSDIPLLA EFLR F Sbjct: 383 IKVDVRVIAATNRNLEEAVARSEFRADLYYRISVVPLLLPPLRERRSDIPLLAREFLRKF 442 Query: 421 NSVNGRTLTLEASAIDVLMNCGFPGNVRELENCIERTATLSAGPSIVRNDFACCHGQCLS 480 NS NGR+LTLEASAIDVLM+C FPGNVRELENCIERTATLSAG SIVR+DFAC GQCLS Sbjct: 443 NSENGRSLTLEASAIDVLMSCKFPGNVRELENCIERTATLSAGTSIVRSDFACSQGQCLS 502 Query: 481 AMLWKSTSEEATVQTAPVVPVPAKPISLPSEATAPAPLVGSELASLAPPGTVLVSGAKMA 540 LWKSTS T AP+ PVPAK I +P TAP P E SLAP GTVLVSGA+MA Sbjct: 503 TTLWKSTSYGKTDPAAPMQPVPAKSI-IPLAETAPPPQAVCEPGSLAPSGTVLVSGARMA 561 Query: 541 DRERVIAAMEKSGWVQAKAARLLGLTPRQIGYALRKYGIEIKRF 584 DRERV+AAMEKSGWVQAKAARLLGLTPRQ+GYALRKYGIEIKRF Sbjct: 562 DRERVVAAMEKSGWVQAKAARLLGLTPRQVGYALRKYGIEIKRF 605 >emb|CAA29532.1| unnamed protein product [Bradyrhizobium japonicum] prf||1405333A NifA protein Length = 582 Score = 917 bits (2371), Expect = 0.0, Method: Compositional matrix adjust. Identities = 462/584 (79%), Positives = 509/584 (87%), Gaps = 2/584 (0%) Query: 1 MLHIASAREIPASHPETERELSGEPLRESALTGIFEISKILTAPCRLEVTLANVVGLLQS 60 MLHI S+ E PAS PE ER GEP ESAL GI+EISKIL AP RLEVTLANV+GLLQS Sbjct: 1 MLHIPSSSERPASQPEPERAPPGEPSHESALAGIYEISKILNAPGRLEVTLANVLGLLQS 60 Query: 61 FVQMRHGIVSLFDDDGMPDITVGAGWSEGSDDRFRMRLPRKAIDQIVATDRPLVAENVAA 120 FVQMRHG+VSLF+DDG+P++TVGAGWSEG+D+R+R +P+KAI +IVAT R L+ ENVAA Sbjct: 61 FVQMRHGLVSLFNDDGVPELTVGAGWSEGTDERYRTCVPQKAIHEIVATGRSLMVENVAA 120 Query: 121 EPAFSAADLEVLGASDNMPVSFIGVPIRIDPKVVGTLTLDRVCDERSSLRLDYDARLLTM 180 E AFSAAD EVLGASD++PV+FIGVPIR+D VVGTLT+DR+ + SSL L+YDARLL M Sbjct: 121 ETAFSAADREVLGASDSIPVAFIGVPIRVDSTVVGTLTIDRIPEGSSSL-LEYDARLLAM 179 Query: 181 IANLVGQTVRLHRLFACDRERLMVEKDRLQKQLFEFRQPVRERKKVPVHGIIGDSPALRG 240 +AN++GQT++LHRLFA DRE+ +V+KDRL+KQ + P RER ++ HGIIGDSPAL Sbjct: 180 VANVIGQTIKLHRLFAGDREQSLVDKDRLEKQTVDRGPPARERNELQAHGIIGDSPALSA 239 Query: 241 LLEKIAVVAKSNSTVLLRGESGTGKELVAKAIHESSSRAKRPFIKLNCAALPETVLESEL 300 LLEKI VVA+SNSTVLLRGESGTGKELVAKAIHESS RAKRPF+KLNCAALPETVLESEL Sbjct: 240 LLEKIVVVARSNSTVLLRGESGTGKELVAKAIHESSVRAKRPFVKLNCAALPETVLESEL 299 Query: 301 FGHEKGAFTGAFSSRKGRFELADKGTLFLDEIGEISAPFQAKLLRVLQEQEFERVGSNQT 360 FGHEKGAFTGA S+RKGRFELADKGTLFLDEIGEIS PFQAKLLRVLQEQEFERVGSN T Sbjct: 300 FGHEKGAFTGAVSARKGRFELADKGTLFLDEIGEISPPFQAKLLRVLQEQEFERVGSNHT 359 Query: 361 IKVDVRVIAATNKNLEEAVARSEFRADLYYRISVVPLLLPPLRERRSDIPLLAGEFLRNF 420 IKVDVRVIAATN+NLEEAVARSEFRADLYYRISVVPLLLPPLRERRSDIPLLA EFLR F Sbjct: 360 IKVDVRVIAATNRNLEEAVARSEFRADLYYRISVVPLLLPPLRERRSDIPLLAREFLRKF 419 Query: 421 NSVNGRTLTLEASAIDVLMNCGFPGNVRELENCIERTATLSAGPSIVRNDFACCHGQCLS 480 NS NGR+LTLEASAIDVLM+C FPGNVRELENCIERTATLSAG SIVR+DFAC GQCLS Sbjct: 420 NSENGRSLTLEASAIDVLMSCKFPGNVRELENCIERTATLSAGTSIVRSDFACSQGQCLS 479 Query: 481 AMLWKSTSEEATVQTAPVVPVPAKPISLPSEATAPAPLVGSELASLAPPGTVLVSGAKMA 540 LWKSTS T AP+ PVPAK I +P TAP P E SLAP GTVLVSGA+MA Sbjct: 480 TTLWKSTSYGKTDPAAPMQPVPAKSI-IPLAETAPPPQAVCEPGSLAPSGTVLVSGARMA 538 Query: 541 DRERVIAAMEKSGWVQAKAARLLGLTPRQIGYALRKYGIEIKRF 584 DRERV+AAMEKSGWVQAKAARLLGLTPRQ+GYALRKYGIEIKRF Sbjct: 539 DRERVVAAMEKSGWVQAKAARLLGLTPRQVGYALRKYGIEIKRF 582 >emb|CAA29531.1| unnamed protein product [Bradyrhizobium japonicum] Length = 605 Score = 917 bits (2370), Expect = 0.0, Method: Compositional matrix adjust. Identities = 462/584 (79%), Positives = 509/584 (87%), Gaps = 2/584 (0%) Query: 1 MLHIASAREIPASHPETERELSGEPLRESALTGIFEISKILTAPCRLEVTLANVVGLLQS 60 MLHI S+ E PAS PE ER GEP ESAL GI+EISKIL AP RLEVTLANV+GLLQS Sbjct: 24 MLHIPSSSERPASQPEPERAPPGEPSHESALAGIYEISKILNAPGRLEVTLANVLGLLQS 83 Query: 61 FVQMRHGIVSLFDDDGMPDITVGAGWSEGSDDRFRMRLPRKAIDQIVATDRPLVAENVAA 120 FVQMRHG+VSLF+DDG+P++TVGAGWSEG+D+R+R +P+KAI +IVAT R L+ ENVAA Sbjct: 84 FVQMRHGLVSLFNDDGVPELTVGAGWSEGTDERYRTCVPQKAIHEIVATGRSLMVENVAA 143 Query: 121 EPAFSAADLEVLGASDNMPVSFIGVPIRIDPKVVGTLTLDRVCDERSSLRLDYDARLLTM 180 E AFSAAD EVLGASD++PV+FIGVPIR+D VVGTLT+DR+ + SSL L+YDARLL M Sbjct: 144 ETAFSAADREVLGASDSIPVAFIGVPIRVDSTVVGTLTIDRIPEGSSSL-LEYDARLLAM 202 Query: 181 IANLVGQTVRLHRLFACDRERLMVEKDRLQKQLFEFRQPVRERKKVPVHGIIGDSPALRG 240 +AN++GQT++LHRLFA DRE+ +V+KDRL+KQ + P RER ++ HGIIGDSPAL Sbjct: 203 VANVIGQTIKLHRLFAGDREQSLVDKDRLEKQTVDRGPPARERNELQAHGIIGDSPALSA 262 Query: 241 LLEKIAVVAKSNSTVLLRGESGTGKELVAKAIHESSSRAKRPFIKLNCAALPETVLESEL 300 LLEKI VVA+SNSTVLLRGESGTGKELVAKAIHESS RAKRPF+KLNCAALPETVLESEL Sbjct: 263 LLEKIVVVARSNSTVLLRGESGTGKELVAKAIHESSVRAKRPFVKLNCAALPETVLESEL 322 Query: 301 FGHEKGAFTGAFSSRKGRFELADKGTLFLDEIGEISAPFQAKLLRVLQEQEFERVGSNQT 360 FGHEKGAFTGA S+RKGRFELADKGTLFLDEIGEIS PFQAKLLRVLQEQEFERVGSN T Sbjct: 323 FGHEKGAFTGAVSARKGRFELADKGTLFLDEIGEISPPFQAKLLRVLQEQEFERVGSNHT 382 Query: 361 IKVDVRVIAATNKNLEEAVARSEFRADLYYRISVVPLLLPPLRERRSDIPLLAGEFLRNF 420 IKVDVRVIAATN+NLEEAVARSEFRADLYYRISVVPLLLPPLRERRSDIPLLA EFLR F Sbjct: 383 IKVDVRVIAATNRNLEEAVARSEFRADLYYRISVVPLLLPPLRERRSDIPLLAREFLRKF 442 Query: 421 NSVNGRTLTLEASAIDVLMNCGFPGNVRELENCIERTATLSAGPSIVRNDFACCHGQCLS 480 NS NGR+LTLEASAIDVLM+C FPGNVRELENCIERTATLSAG SIVR+DFAC GQCLS Sbjct: 443 NSENGRSLTLEASAIDVLMSCKFPGNVRELENCIERTATLSAGTSIVRSDFACSQGQCLS 502 Query: 481 AMLWKSTSEEATVQTAPVVPVPAKPISLPSEATAPAPLVGSELASLAPPGTVLVSGAKMA 540 LWKSTS T AP+ PVPAK I +P TAP P E SLAP GTVLVSGA+MA Sbjct: 503 TTLWKSTSYGKTDPAAPMQPVPAKSI-IPLAETAPPPQAVCEPGSLAPSGTVLVSGARMA 561 Query: 541 DRERVIAAMEKSGWVQAKAARLLGLTPRQIGYALRKYGIEIKRF 584 DRERV+AAMEKSGWVQAKAARLLGLTPRQ+GYALRKYGIEIKRF Sbjct: 562 DRERVVAAMEKSGWVQAKAARLLGLTPRQVGYALRKYGIEIKRF 605 >ref|NP_106431.1| NIFA, nif-specific regulatory protein [Mesorhizobium loti MAFF303099] dbj|BAB52217.1| Nif-specific regulatory protein; NifA [Mesorhizobium loti MAFF303099] Length = 607 Score = 845 bits (2184), Expect = 0.0, Method: Compositional matrix adjust. Identities = 429/578 (74%), Positives = 471/578 (81%), Gaps = 5/578 (0%) Query: 11 PASHPETERELSGEPLRESALTGIFEISKILTAPCRLEVTLANVVGLLQSFVQMRHGIVS 70 P S E + PL E A IFE S LTAP LE TLANVV LL S VQ+RHGI+S Sbjct: 31 PNSKSEMNNVVPIVPLHERA-PDIFETSIALTAPSGLEATLANVVDLLPSLVQVRHGIIS 89 Query: 71 LFDDDGMPDITVGAGWSEGSDDRFRMRLPRKAIDQIVATDRPLVAENVAAEPAFSAADLE 130 L D G+PD+TVGAGWSEGSD+R+R LPR AIDQI+ T LVAEN+A +PAF+AAD E Sbjct: 90 LCDGAGIPDMTVGAGWSEGSDERYRKHLPRAAIDQIITTGMALVAENIALDPAFNAADKE 149 Query: 131 VLGASDNMPVSFIGVPIRIDPKVVGTLTLDRVCDERSSLRLDYDARLLTMIANLVGQTVR 190 VLGASDNM VSFIGVPIR+D VVGTLT+DR+ D +S LDYD RLLT IANLVGQTV+ Sbjct: 150 VLGASDNMKVSFIGVPIRVDANVVGTLTIDRILDNKSGSLLDYDLRLLTTIANLVGQTVK 209 Query: 191 LHRLFACDRERLMVEKDRLQKQLFEFRQPVRERKKVPVHGIIGDSPALRGLLEKIAVVAK 250 LHRLFA DRERLM EK R+QKQ E +QP E K+ V GIIGDSPALRGLLEK+A+VA+ Sbjct: 210 LHRLFASDRERLMAEKIRMQKQFGELKQPGHEGKRAHVKGIIGDSPALRGLLEKVALVAR 269 Query: 251 SNSTVLLRGESGTGKELVAKAIHESSSRAKRPFIKLNCAALPETVLESELFGHEKGAFTG 310 SNSTVLLRGESGTGKELVAKA+HE S RAKRPFIKLNCAALPETVLESELFGHEKGAFT Sbjct: 270 SNSTVLLRGESGTGKELVAKAVHEMSGRAKRPFIKLNCAALPETVLESELFGHEKGAFTS 329 Query: 311 AFSSRKGRFELADKGTLFLDEIGEISAPFQAKLLRVLQEQEFERVGSNQTIKVDVRVIAA 370 AF+SRKGRFELADKGTLFLDEIGEISA FQAKLLRVLQEQEFERVGSNQTIKVDVRVIAA Sbjct: 330 AFNSRKGRFELADKGTLFLDEIGEISASFQAKLLRVLQEQEFERVGSNQTIKVDVRVIAA 389 Query: 371 TNKNLEEAVARSEFRADLYYRISVVPLLLPPLRERRSDIPLLAGEFLRNFNSVNGRTLTL 430 TN+NLE+AVAR+EFRADLYYRISVVPLL+PPLRERR DIPLLA EFL+NFNS NGRT+ Sbjct: 390 TNRNLEDAVARNEFRADLYYRISVVPLLVPPLRERRGDIPLLAAEFLKNFNSENGRTMVF 449 Query: 431 EASAIDVLMNCGFPGNVRELENCIERTATLSAGPSIVRNDFACCHGQCLSAMLWKSTSEE 490 +ASA +VLMNC FPGNVRELENC++RTATL+AG SI RNDF CCHG+CLSAMLWK S+E Sbjct: 450 DASATEVLMNCAFPGNVRELENCVQRTATLAAGASIGRNDFDCCHGRCLSAMLWKHASKE 509 Query: 491 ATVQTAPVVPVPAKPISLPSEATAPA----PLVGSELASLAPPGTVLVSGAKMADRERVI 546 ++ P+ P P P S A A A P SE A AP LVS AKM DRER+I Sbjct: 510 TAPKSEPIAPSPLNPAMQSSGAFASAAIGVPHDDSEQALPAPVRLGLVSDAKMTDRERLI 569 Query: 547 AAMEKSGWVQAKAARLLGLTPRQIGYALRKYGIEIKRF 584 AAME+SGWVQAKAARLLGLTPRQIGYALRKYGIEIK Sbjct: 570 AAMERSGWVQAKAARLLGLTPRQIGYALRKYGIEIKNL 607